Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c5_6640 Physcomitrium patens HOM05D003440 ORTHO05D003953 3.4e-82 308.1 143 100.0
Pp3c6_18540 Physcomitrium patens HOM05D003440 ORTHO05D003953 3.8e-49 198.4 134 70.1
Pp3c7_16400 Physcomitrium patens HOM05D003440 ORTHO05D003953 1.2e-29 133.7 147 47.6
Pp3c3_1170 Physcomitrium patens HOM05D003440 ORTHO05D003953 5.4e-27 124.8 144 45.8
Pp3c13_1650 Physcomitrium patens HOM05D003440 ORTHO05D003953 1.3e-25 120.2 92 54.3
DCAR_007995 Daucus carota HOM05D003440 ORTHO05D003953 1.9e-16 89.7 86 43.0
Sed0009834 Sechium edule HOM05D003440 ORTHO05D003953 1.6e-15 86.7 55 60.0
CSS0029757 Camellia sinensis var. sinensis HOM05D003440 ORTHO05D003953 3.6e-15 85.5 96 40.6
ClCG03G010850 Citrullus lanatus HOM05D003440 ORTHO05D003953 3.6e-15 85.5 55 58.2
CsaV3_1G044590 Cucumis sativus L. HOM05D003440 ORTHO05D003953 3.6e-15 85.5 55 58.2
SEGI_04004 Sequoiadendron giganteum HOM05D003440 ORTHO05D003953 3.6e-15 85.5 55 58.2
Dinv06976 Davidia involucrata HOM05D003440 ORTHO05D003953 6.2e-15 84.7 55 56.4
Lalb_Chr03g0038421 Lupinus albus HOM05D003440 ORTHO05D003953 1.1e-14 84.0 55 60.0
C06p39000 Brassica napus HOM05D003440 ORTHO05D003953 1.8e-14 83.2 132 35.6
BolC6t38992H Brassica oleracea HOM05D003440 ORTHO05D003953 1.8e-14 83.2 132 35.6
Lalb_Chr19g0127521 Lupinus albus HOM05D003440 ORTHO05D003953 1.8e-14 83.2 55 60.0
MD12G1259800 Malus domestica HOM05D003440 ORTHO05D003953 1.8e-14 83.2 55 58.2
SalBow6G6125 Salvia bowleyana HOM05D003440 ORTHO05D003953 1.8e-14 83.2 56 60.7
AL2G20420 Arabidopsis lyrata HOM05D003440 ORTHO05D003953 2.3e-14 82.8 55 58.2
AT1G65295 Arabidopsis thaliana HOM05D003440 ORTHO05D003953 2.3e-14 82.8 55 58.2
Carub.0002s1098 Capsella rubella HOM05D003440 ORTHO05D003953 2.3e-14 82.8 55 58.2
CARHR056980 Cardamine hirsuta HOM05D003440 ORTHO05D003953 2.3e-14 82.8 55 58.2
Thhalv10019335m.g Eutrema salsugineum HOM05D003440 ORTHO05D003953 2.3e-14 82.8 55 58.2
Nitab4.5_0001653g0080 Nicotiana tabacum HOM05D003440 ORTHO05D003953 2.3e-14 82.8 55 58.2
Nitab4.5_0012961g0010 Nicotiana tabacum HOM05D003440 ORTHO05D003953 2.3e-14 82.8 55 58.2
Peaxi162Scf00253g00722 Petunia axillaris HOM05D003440 ORTHO05D003953 2.3e-14 82.8 55 56.4
Solyc11g008910.2 Solanum lycopersicum HOM05D003440 ORTHO05D003953 2.3e-14 82.8 55 58.2
Sopen11g004700 Solanum pennellii HOM05D003440 ORTHO05D003953 2.3e-14 82.8 55 58.2
PGSC0003DMG400016235 Solanum tuberosum HOM05D003440 ORTHO05D003953 2.3e-14 82.8 55 58.2
A07p32790 Brassica napus HOM05D003440 ORTHO05D003953 3.1e-14 82.4 58 56.9
Cpa.g.sc39.4 Carica papaya HOM05D003440 ORTHO05D003953 3.1e-14 82.4 82 42.7
Oeu040492.1 Olea europaea HOM05D003440 ORTHO05D003953 3.1e-14 82.4 56 60.7
RcHm_v2.0_Chr3g0447971 Rosa chinensis HOM05D003440 ORTHO05D003953 3.1e-14 82.4 94 40.4
COL.COLO4_27388 Corchorus olitorius HOM05D003440 ORTHO05D003953 4.0e-14 82.0 55 56.4
Dinv29111 Davidia involucrata HOM05D003440 ORTHO05D003953 4.0e-14 82.0 55 54.5
Hma1.2p1_0123F.1_g057890 Hydrangea macrophylla HOM05D003440 ORTHO05D003953 4.0e-14 82.0 55 54.5
Thecc.05G200800 Theobroma cacao HOM05D003440 ORTHO05D003953 4.0e-14 82.0 55 56.4
EL10Ac4g09977 Beta vulgaris HOM05D003440 ORTHO05D003953 5.2e-14 81.6 55 58.2
BcaC03g14694 Brassica carinata HOM05D003440 ORTHO05D003953 5.2e-14 81.6 55 58.2
A02p13170 Brassica napus HOM05D003440 ORTHO05D003953 5.2e-14 81.6 55 58.2
C02p21330 Brassica napus HOM05D003440 ORTHO05D003953 5.2e-14 81.6 55 58.2
BolC2t08270H Brassica oleracea HOM05D003440 ORTHO05D003953 5.2e-14 81.6 55 58.2
BraA02t06373Z Brassica rapa HOM05D003440 ORTHO05D003953 5.2e-14 81.6 55 58.2
BraA07t30906Z Brassica rapa HOM05D003440 ORTHO05D003953 5.2e-14 81.6 132 35.6
Duzib128G1849 Durio zibethinus HOM05D003440 ORTHO05D003953 5.2e-14 81.6 55 56.4
FAN02G4240 Fragaria x ananassa HOM05D003440 ORTHO05D003953 5.2e-14 81.6 55 56.4
Gohir.A13G154500 Gossypium hirsutum HOM05D003440 ORTHO05D003953 5.2e-14 81.6 55 56.4
Gohir.D13G159200 Gossypium hirsutum HOM05D003440 ORTHO05D003953 5.2e-14 81.6 55 56.4
Gorai.013G179900 Gossypium raimondii HOM05D003440 ORTHO05D003953 5.2e-14 81.6 55 56.4
MD04G1244000 Malus domestica HOM05D003440 ORTHO05D003953 5.2e-14 81.6 55 56.4
PGR031G2316 Punica granatum HOM05D003440 ORTHO05D003953 5.2e-14 81.6 55 56.4
THA.LOC104805696 Tarenaya hassleriana HOM05D003440 ORTHO05D003953 5.2e-14 81.6 55 58.2
Eucgr.H01385 Eucalyptus grandis HOM05D003440 ORTHO05D003953 6.8e-14 81.3 55 56.4
Glyma.09G251300 Glycine max HOM05D003440 ORTHO05D003953 6.8e-14 81.3 55 56.4
Glyma.18G241200 Glycine max HOM05D003440 ORTHO05D003953 6.8e-14 81.3 55 56.4
MBI11_g07420_MAGBIO Magnolia biondii HOM05D003440 ORTHO05D003953 6.8e-14 81.3 55 54.5
TWI75G0665 Tripterygium wilfordii HOM05D003440 ORTHO05D003953 6.8e-14 81.3 88 43.2
BcaNung05535 Brassica carinata HOM05D003440 ORTHO05D003953 8.9e-14 80.9 55 56.4
Gorai.010G138900 Gossypium raimondii HOM05D003440 ORTHO05D003953 8.9e-14 80.9 55 56.4
Lalb_Chr02g0149431 Lupinus albus HOM05D003440 ORTHO05D003953 8.9e-14 80.9 56 55.4
Nn1g09786 Nelumbo nucifera HOM05D003440 ORTHO05D003953 8.9e-14 80.9 55 56.4
arahy.Tifrunner.gnm1.ann1.7Z41ZG Arachis hypogaea HOM05D003440 ORTHO05D003953 1.2e-13 80.5 55 56.4
arahy.Tifrunner.gnm1.ann1.UVCE5Y Arachis hypogaea HOM05D003440 ORTHO05D003953 1.2e-13 80.5 55 56.4
BcaB05g24106 Brassica carinata HOM05D003440 ORTHO05D003953 1.2e-13 80.5 55 56.4
CANSAT54G0566 Cannabis sativa HOM05D003440 ORTHO05D003953 1.2e-13 80.5 99 40.4
FvH4_6g00580 Fragaria vesca HOM05D003440 ORTHO05D003953 1.2e-13 80.5 55 54.5
Phvul.008G054900 Phaseolus vulgaris HOM05D003440 ORTHO05D003953 1.2e-13 80.5 55 56.4
QL01p048843 Quercus lobata HOM05D003440 ORTHO05D003953 1.2e-13 80.5 55 54.5
QL04p042289 Quercus lobata HOM05D003440 ORTHO05D003953 1.2e-13 80.5 55 54.5
GSVIVG01019121001 Vitis vinifera HOM05D003440 ORTHO05D003953 1.2e-13 80.5 55 54.5
ATR0561G171 Amborella trichopoda HOM05D003440 ORTHO05D003953 1.5e-13 80.1 55 56.4
Manes.09G184900 Manihot esculenta HOM05D003440 ORTHO05D003953 1.5e-13 80.1 55 54.5
SalBow1G3495 Salvia bowleyana HOM05D003440 ORTHO05D003953 1.5e-13 80.1 56 58.9
MBI07_g09261_MAGBIO Magnolia biondii HOM05D003440 ORTHO05D003953 2.0e-13 79.7 55 54.5
Prupe.6G360500 Prunus persica HOM05D003440 ORTHO05D003953 2.0e-13 79.7 115 35.7
CDE05G2380 Ceratophyllum demersum HOM05D003440 ORTHO05D003953 2.6e-13 79.3 55 54.5
CDE05G3613 Ceratophyllum demersum HOM05D003440 ORTHO05D003953 2.6e-13 79.3 55 54.5
Gohir.D13G092000 Gossypium hirsutum HOM05D003440 ORTHO05D003953 2.6e-13 79.3 55 54.5
Actinidia34765 Actinidia chinensis HOM05D003440 ORTHO05D003953 3.4e-13 79.0 55 50.9
Lj1g0025945 Lotus japonicus HOM05D003440 ORTHO05D003953 3.4e-13 79.0 55 56.4
Manes.08G104200 Manihot esculenta HOM05D003440 ORTHO05D003953 3.4e-13 79.0 55 52.7
Phvul.007G118600 Phaseolus vulgaris HOM05D003440 ORTHO05D003953 3.4e-13 79.0 55 54.5
Psat3g103680 Pisum sativum HOM05D003440 ORTHO05D003953 3.4e-13 79.0 55 54.5
Sed0018617 Sechium edule HOM05D003440 ORTHO05D003953 3.4e-13 79.0 55 54.5
THA.LOC104821944 Tarenaya hassleriana HOM05D003440 ORTHO05D003953 3.4e-13 79.0 55 56.4
TWI36G0275 Tripterygium wilfordii HOM05D003440 ORTHO05D003953 3.4e-13 79.0 55 54.5
ClCG11G010770 Citrullus lanatus HOM05D003440 ORTHO05D003953 4.4e-13 78.6 55 54.5
Cc09_g03520 Coffea canephora HOM05D003440 ORTHO05D003953 4.4e-13 78.6 55 54.5
MELO3C008739.2 Cucumis melo HOM05D003440 ORTHO05D003953 4.4e-13 78.6 55 54.5
CsaV3_2G009650 Cucumis sativus L. HOM05D003440 ORTHO05D003953 4.4e-13 78.6 55 54.5
Ciclev10013140m.g Citrus clementina HOM05D003440 ORTHO05D003953 5.8e-13 78.2 55 54.5
Glyma.20G219200 Glycine max HOM05D003440 ORTHO05D003953 5.8e-13 78.2 55 54.5
Lj1g0010972 Lotus japonicus HOM05D003440 ORTHO05D003953 5.8e-13 78.2 55 54.5
Duzib106G1272 Durio zibethinus HOM05D003440 ORTHO05D003953 7.5e-13 77.8 54 55.6
SMO331G0005 Selaginella moellendorffii HOM05D003440 ORTHO05D003953 7.5e-13 77.8 56 57.1
vmacro10410 Vaccinium macrocarpon HOM05D003440 ORTHO05D003953 7.5e-13 77.8 89 40.4
Rhsim09G0129600 Rhododendron simsii HOM05D003440 ORTHO05D003953 9.9e-13 77.4 80 40.0
Gohir.A05G391000 Gossypium hirsutum HOM05D003440 ORTHO05D003953 1.3e-12 77.0 55 54.5
Gohir.D04G026200 Gossypium hirsutum HOM05D003440 ORTHO05D003953 1.3e-12 77.0 55 54.5
Gorai.012G028800 Gossypium raimondii HOM05D003440 ORTHO05D003953 1.3e-12 77.0 55 54.5
TPR.G30343 Trifolium pratense HOM05D003440 ORTHO05D003953 1.3e-12 77.0 55 54.5
Sed0001280 Sechium edule HOM05D003440 ORTHO05D003953 1.7e-12 76.6 90 40.0
Glyma.10G170700 Glycine max HOM05D003440 ORTHO05D003953 2.2e-12 76.3 55 52.7
Medtr7g079830 Medicago truncatula HOM05D003440 ORTHO05D003953 2.2e-12 76.3 55 52.7
Potri.019G053100 Populus trichocarpa HOM05D003440 ORTHO05D003953 2.2e-12 76.3 55 52.7
Sabra19G0062600 Salix brachista HOM05D003440 ORTHO05D003953 2.2e-12 76.3 55 52.7
TPR.G14664 Trifolium pratense HOM05D003440 ORTHO05D003953 3.7e-12 75.5 55 50.9
Zm00001eb169930 Zea mays HOM05D003440 ORTHO05D003953 4.9e-12 75.1 57 52.6
SGA_v2.0_scaffold122G33174 Striga asiatica HOM05D003440 ORTHO05D003953 8.3e-12 74.3 57 54.4
Os11g0463700 Oryza sativa ssp. japonica HOM05D003440 ORTHO05D003953 1.1e-11 73.9 55 50.9
MELO3C010069.2 Cucumis melo HOM05D003440 ORTHO05D003953 1.4e-11 73.6 49 57.1
Migut.F01880 Erythranthe guttata HOM05D003440 ORTHO05D003953 1.9e-11 73.2 63 50.8
CiPaw.07G079500 Carya illinoinensis HOM05D003440 ORTHO05D003953 2.4e-11 72.8 50 56.0
Migut.F02138 Erythranthe guttata HOM05D003440 ORTHO05D003953 3.2e-11 72.4 56 51.8
HanXRQChr16g0512031 Helianthus annuus HOM05D003440 ORTHO05D003953 5.4e-11 71.6 65 47.7
Hund21895 Selenicereus undatus HOM05D003440 ORTHO05D003953 5.4e-11 71.6 55 52.7
AUR62000320 Chenopodium quinoa HOM05D003440 ORTHO05D003953 7.1e-11 71.2 47 59.6
AUR62006666 Chenopodium quinoa HOM05D003440 ORTHO05D003953 7.1e-11 71.2 47 59.6
SEGI_09135 Sequoiadendron giganteum HOM05D003440 ORTHO05D003953 7.1e-11 71.2 57 49.1
Mapoly0005s0064 Marchantia polymorpha HOM05D003440 ORTHO05D003953 1.2e-10 70.5 70 45.7
Os01g0917300 Oryza sativa ssp. japonica HOM05D003440 ORTHO05D003953 2.1e-10 69.7 62 48.4
Haze_04543 Corylus avellana HOM05D003440 ORTHO05D003953 3.5e-10 68.9 47 55.3
FAN05G5443 Fragaria x ananassa HOM05D003440 ORTHO05D003953 3.5e-10 68.9 47 55.3
FAN09G4309 Fragaria x ananassa HOM05D003440 ORTHO05D003953 3.5e-10 68.9 47 55.3
FAN14G3476 Fragaria x ananassa HOM05D003440 ORTHO05D003953 3.5e-10 68.9 47 55.3
HanXRQChr05g0150821 Helianthus annuus HOM05D003440 ORTHO05D003953 4.6e-10 68.6 58 48.3
HanXRQChr14g0434751 Helianthus annuus HOM05D003440 ORTHO05D003953 8.6e-09 64.3 58 48.3
Hund07337 Selenicereus undatus HOM05D003440 ORTHO05D003953 8.6e-09 64.3 55 49.1
ATR1127G118 Amborella trichopoda HOM05D003440 ORTHO05D003953 1.9e-08 63.2 59 44.1
Peaxi162Scf00344g01116 Petunia axillaris HOM05D003440 ORTHO05D003953 2.5e-08 62.8 39 59.0
ATR1127G125 Amborella trichopoda HOM05D003440 ORTHO05D003953 9.5e-08 60.8 135 30.4
Aqoxy7G03195 Aquilegia oxysepala HOM05D003440 ORTHO05D003953 1.2e-07 60.5 53 43.4
MD04G1180500 Malus domestica HOM05D003440 ORTHO05D003953 1.6e-07 60.1 60 36.7
QL07p030748 Quercus lobata HOM05D003440 ORTHO05D003953 2.8e-07 59.3 56 41.1
Atru.chr8.26 Acer truncatum HOM05D003440 ORTHO05D003953 4.7e-07 58.5 102 28.4
QL07p030389 Quercus lobata HOM05D003440 ORTHO05D003953 1.1e-06 57.4 56 39.3
Ciclev10013742m.g Citrus clementina HOM05D003440 ORTHO05D003953 1.4e-06 57.0 91 30.8
Eucgr.K01315 Eucalyptus grandis HOM05D003440 ORTHO05D003953 2.4e-06 56.2 81 32.1
Prupe.6G300400 Prunus persica HOM05D003440 ORTHO05D003953 2.4e-06 56.2 55 40.0
HanXRQChr01g0000641 Helianthus annuus HOM05D003440 ORTHO05D003953 3.1e-06 55.8 57 42.1
Nn5g26738 Nelumbo nucifera HOM05D003440 ORTHO05D003953 4.0e-06 55.5 60 38.3
Thecc.04G064200 Theobroma cacao HOM05D003440 ORTHO05D003953 5.2e-06 55.1 56 41.1
CSS0039616 Camellia sinensis var. sinensis HOM05D003440 ORTHO05D003953 6.8e-06 54.7 58 36.2
GSVIVG01029833001 Vitis vinifera HOM05D003440 ORTHO05D003953 6.8e-06 54.7 60 38.3
Aqoxy2G00611 Aquilegia oxysepala HOM05D003440 ORTHO05D003953 8.9e-06 54.3 58 39.7
Os11g0121300 Oryza sativa ssp. japonica HOM05D003440 ORTHO05D003953 8.9e-06 54.3 48 45.8
Os12g0121000 Oryza sativa ssp. japonica HOM05D003440 ORTHO05D003953 8.9e-06 54.3 48 45.8


User provided reference genes

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