Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c5_6360 Physcomitrium patens HOM05D005713 ORTHO05D007751 0.0e+00 1089.3 558 100.0
Mapoly0160s0024 Marchantia polymorpha HOM05D005713 ORTHO05D007751 8.2e-164 581.3 491 61.3
Potri.T124704 Populus trichocarpa HOM05D005713 ORTHO05D007751 1.7e-156 557.0 439 60.6
SEGI_30892 Sequoiadendron giganteum HOM05D005713 ORTHO05D007751 1.7e-156 557.0 547 54.1
Potri.009G111692 Populus trichocarpa HOM05D005713 ORTHO05D007751 2.2e-156 556.6 439 60.4
Sp1g36220 Schrenkiella parvula HOM05D005713 ORTHO05D007751 2.8e-156 556.2 439 61.7
COL.COLO4_32466 Corchorus olitorius HOM05D005713 ORTHO05D007751 6.3e-156 555.1 440 60.0
ATR0733G225 Amborella trichopoda HOM05D005713 ORTHO05D007751 1.4e-155 553.9 496 56.0
Nn1g05118 Nelumbo nucifera HOM05D005713 ORTHO05D007751 1.4e-155 553.9 496 56.2
GSVIVG01031911001 Vitis vinifera HOM05D005713 ORTHO05D007751 1.4e-155 553.9 440 60.5
CSS0002132 Camellia sinensis var. sinensis HOM05D005713 ORTHO05D007751 3.1e-155 552.7 440 60.5
Cc02_g17920 Coffea canephora HOM05D005713 ORTHO05D007751 3.1e-155 552.7 445 59.8
CiPaw.06G137900 Carya illinoinensis HOM05D005713 ORTHO05D007751 7.0e-155 551.6 440 60.7
Sabra09G0085300 Salix brachista HOM05D005713 ORTHO05D007751 7.0e-155 551.6 448 59.4
Hma1.2p1_0066F.1_g036800 Hydrangea macrophylla HOM05D005713 ORTHO05D007751 9.1e-155 551.2 440 59.3
Os03g0769600 Oryza sativa ssp. japonica HOM05D005713 ORTHO05D007751 9.1e-155 551.2 452 59.1
VMungo1127G1847 Vigna mungo HOM05D005713 ORTHO05D007751 1.2e-154 550.8 503 55.1
CAN.G1.51 Capsicum annuum HOM05D005713 ORTHO05D007751 2.0e-154 550.1 512 55.7
Thhalv10011363m.g Eutrema salsugineum HOM05D005713 ORTHO05D007751 2.0e-154 550.1 439 60.8
Gorai.005G229000 Gossypium raimondii HOM05D005713 ORTHO05D007751 2.0e-154 550.1 440 59.3
Phvul.011G047800 Phaseolus vulgaris HOM05D005713 ORTHO05D007751 2.0e-154 550.1 503 55.7
arahy.Tifrunner.gnm1.ann1.6A0IVA Arachis hypogaea HOM05D005713 ORTHO05D007751 3.5e-154 549.3 440 58.9
arahy.Tifrunner.gnm1.ann1.A5JIR8 Arachis hypogaea HOM05D005713 ORTHO05D007751 3.5e-154 549.3 440 58.9
Gohir.A03G180100 Gossypium hirsutum HOM05D005713 ORTHO05D007751 3.5e-154 549.3 440 59.1
THA.LOC104800072 Tarenaya hassleriana HOM05D005713 ORTHO05D007751 3.5e-154 549.3 440 59.3
C08p04230 Brassica napus HOM05D005713 ORTHO05D007751 1.0e-153 547.7 439 60.6
TAR381G0424 Trochodendron aralioides HOM05D005713 ORTHO05D007751 1.0e-153 547.7 450 58.4
BcaB04g17346 Brassica carinata HOM05D005713 ORTHO05D007751 1.3e-153 547.4 439 60.6
BraA08t32431Z Brassica rapa HOM05D005713 ORTHO05D007751 1.3e-153 547.4 439 60.6
Glyma.11G120800 Glycine max HOM05D005713 ORTHO05D007751 1.3e-153 547.4 492 55.5
Gohir.D02G203009 Gossypium hirsutum HOM05D005713 ORTHO05D007751 1.3e-153 547.4 440 58.9
AL1G56340 Arabidopsis lyrata HOM05D005713 ORTHO05D007751 1.7e-153 547.0 447 60.2
BcaC07g37058 Brassica carinata HOM05D005713 ORTHO05D007751 1.7e-153 547.0 439 60.4
Lj3g0005966 Lotus japonicus HOM05D005713 ORTHO05D007751 1.7e-153 547.0 440 59.1
Lalb_Chr01g0002751 Lupinus albus HOM05D005713 ORTHO05D007751 1.7e-153 547.0 440 58.9
Oeu021892.1 Olea europaea HOM05D005713 ORTHO05D007751 1.7e-153 547.0 434 60.4
Thecc.02G121600 Theobroma cacao HOM05D005713 ORTHO05D007751 1.7e-153 547.0 440 59.3
AT1G49380 Arabidopsis thaliana HOM05D005713 ORTHO05D007751 2.2e-153 546.6 447 60.2
BolC8t47226H Brassica oleracea HOM05D005713 ORTHO05D007751 2.2e-153 546.6 439 60.4
HanXRQChr01g0011551 Helianthus annuus HOM05D005713 ORTHO05D007751 2.9e-153 546.2 440 59.8
TPR.G28056 Trifolium pratense HOM05D005713 ORTHO05D007751 2.9e-153 546.2 440 58.9
A08p04030 Brassica napus HOM05D005713 ORTHO05D007751 3.8e-153 545.8 439 60.4
Duzib132G0001 Durio zibethinus HOM05D005713 ORTHO05D007751 3.8e-153 545.8 440 59.1
Manes.15G148000 Manihot esculenta HOM05D005713 ORTHO05D007751 3.8e-153 545.8 439 60.6
Ciclev10028141m.g Citrus clementina HOM05D005713 ORTHO05D007751 6.5e-153 545.0 458 59.2
Ca_20845_v3 Cicer arietinum L. HOM05D005713 ORTHO05D007751 8.5e-153 544.7 440 58.9
Medtr4g069080 Medicago truncatula HOM05D005713 ORTHO05D007751 8.5e-153 544.7 440 58.6
Atru.chr5.2933 Acer truncatum HOM05D005713 ORTHO05D007751 1.5e-152 543.9 439 60.8
PGSC0003DMG400005550 Solanum tuberosum HOM05D005713 ORTHO05D007751 1.5e-152 543.9 508 54.9
Lsat_1_v5_gn_5_173381 Lactuca sativa HOM05D005713 ORTHO05D007751 2.5e-152 543.1 441 59.2
MD05G1072000 Malus domestica HOM05D005713 ORTHO05D007751 3.2e-152 542.7 441 59.6
Prupe.8G105700 Prunus persica HOM05D005713 ORTHO05D007751 4.2e-152 542.3 440 58.9
Lalb_Chr03g0025831 Lupinus albus HOM05D005713 ORTHO05D007751 7.2e-152 541.6 503 53.5
QL11p042284 Quercus lobata HOM05D005713 ORTHO05D007751 7.2e-152 541.6 440 58.6
Rhsim05G0076900 Rhododendron simsii HOM05D005713 ORTHO05D007751 7.2e-152 541.6 454 58.1
MSTRG.20107 Avicennia marina HOM05D005713 ORTHO05D007751 9.4e-152 541.2 434 60.1
Solyc10g051200.2 Solanum lycopersicum HOM05D005713 ORTHO05D007751 9.4e-152 541.2 508 55.1
Aqoxy5G01712 Aquilegia oxysepala HOM05D005713 ORTHO05D007751 1.2e-151 540.8 434 59.9
ClCG02G005320 Citrullus lanatus HOM05D005713 ORTHO05D007751 1.6e-151 540.4 440 59.3
DCAR_022094 Daucus carota HOM05D005713 ORTHO05D007751 1.6e-151 540.4 483 57.1
Sopen10g022910 Solanum pennellii HOM05D005713 ORTHO05D007751 2.7e-151 539.7 508 54.9
CsaV3_7G010230 Cucumis sativus L. HOM05D005713 ORTHO05D007751 3.6e-151 539.3 440 59.1
Aa31LG10G4600 Aethionema arabicum HOM05D005713 ORTHO05D007751 4.7e-151 538.9 492 55.9
MD10G1082600 Malus domestica HOM05D005713 ORTHO05D007751 4.7e-151 538.9 441 60.1
Nitab4.5_0001361g0160 Nicotiana tabacum HOM05D005713 ORTHO05D007751 1.0e-150 537.7 516 54.5
RcHm_v2.0_Chr6g0262411 Rosa chinensis HOM05D005713 ORTHO05D007751 1.0e-150 537.7 439 59.7
CANSAT25G3337 Cannabis sativa HOM05D005713 ORTHO05D007751 1.4e-150 537.3 438 58.4
Eucgr.G00476 Eucalyptus grandis HOM05D005713 ORTHO05D007751 1.4e-150 537.3 457 58.2
Zm00001eb058790 Zea mays HOM05D005713 ORTHO05D007751 1.4e-150 537.3 467 58.2
CDE02G0286 Ceratophyllum demersum HOM05D005713 ORTHO05D007751 2.3e-150 536.6 487 55.4
Duzib052G0462 Durio zibethinus HOM05D005713 ORTHO05D007751 2.3e-150 536.6 440 58.6
FvH4_2g07950 Fragaria vesca HOM05D005713 ORTHO05D007751 3.0e-150 536.2 439 59.5
EL10Ac9g21763 Beta vulgaris HOM05D005713 ORTHO05D007751 6.7e-150 535.0 496 54.8
PSO170G4048 Papaver somniferum HOM05D005713 ORTHO05D007751 6.7e-150 535.0 444 58.1
PSO700G0051 Papaver somniferum HOM05D005713 ORTHO05D007751 1.1e-149 534.3 444 57.9
CARHR039390 Cardamine hirsuta HOM05D005713 ORTHO05D007751 2.0e-149 533.5 504 55.0
HPP92_018386 Vanilla planifolia HOM05D005713 ORTHO05D007751 2.6e-149 533.1 479 55.7
SalBow6G0484 Salvia bowleyana HOM05D005713 ORTHO05D007751 3.3e-149 532.7 443 58.9
Migut.B00270 Erythranthe guttata HOM05D005713 ORTHO05D007751 4.4e-149 532.3 495 54.3
ECA248G1707 Erigeron canadensis HOM05D005713 ORTHO05D007751 9.7e-149 531.2 424 60.1
Sed0025253 Sechium edule HOM05D005713 ORTHO05D007751 9.7e-149 531.2 440 58.2
Carub.0001s3855 Capsella rubella HOM05D005713 ORTHO05D007751 1.7e-148 530.4 431 60.1
PGR042G3676 Punica granatum HOM05D005713 ORTHO05D007751 1.1e-147 527.7 451 57.4
Psat7g185160 Pisum sativum HOM05D005713 ORTHO05D007751 1.4e-147 527.3 440 57.0
unitig_0.g67 Utricularia gibba HOM05D005713 ORTHO05D007751 2.4e-147 526.6 502 54.2
SMO172G0143 Selaginella moellendorffii HOM05D005713 ORTHO05D007751 9.1e-147 524.6 434 60.6
Cpa.g.sc62.105 Carica papaya HOM05D005713 ORTHO05D007751 1.3e-145 520.8 440 57.7
FAN24G3015 Fragaria x ananassa HOM05D005713 ORTHO05D007751 1.3e-145 520.8 453 57.2
Peaxi162Scf00003g01334 Petunia axillaris HOM05D005713 ORTHO05D007751 5.0e-145 518.8 513 52.8
Nitab4.5_0005152g0070 Nicotiana tabacum HOM05D005713 ORTHO05D007751 1.9e-144 516.9 516 53.3
Hund06219 Selenicereus undatus HOM05D005713 ORTHO05D007751 1.9e-144 516.9 411 59.9
vmacro19441 Vaccinium macrocarpon HOM05D005713 ORTHO05D007751 4.0e-142 509.2 531 49.5
MELO3C018406.2 Cucumis melo HOM05D005713 ORTHO05D007751 6.8e-142 508.4 440 56.8
AUR62011361 Chenopodium quinoa HOM05D005713 ORTHO05D007751 5.7e-141 505.4 420 58.3
CBR_g46847 Chara braunii HOM05D005713 ORTHO05D007751 1.3e-140 504.2 443 58.2
SGA_v2.0_scaffold58G20572 Striga asiatica HOM05D005713 ORTHO05D007751 8.3e-140 501.5 435 57.2
Lj5C201T4 Lonicera japonica HOM05D005713 ORTHO05D007751 1.8e-139 500.4 439 56.0
MBI16_g10988_MAGBIO Magnolia biondii HOM05D005713 ORTHO05D007751 1.8e-139 500.4 438 55.7
FAN15G0466 Fragaria x ananassa HOM05D005713 ORTHO05D007751 2.4e-139 500.0 453 55.6
AUR62016700 Chenopodium quinoa HOM05D005713 ORTHO05D007751 2.0e-138 496.9 420 57.4
Dinv23558 Davidia involucrata HOM05D005713 ORTHO05D007751 1.7e-137 493.8 409 57.9
Hma1.2p1_0066F.1_g036810 Hydrangea macrophylla HOM05D005713 ORTHO05D007751 2.5e-128 463.4 369 59.9
Haze_02421 Corylus avellana HOM05D005713 ORTHO05D007751 1.0e-121 441.4 439 52.6
Cre13.g575000 Chlamydomonas reinhardtii HOM05D005713 ORTHO05D007751 1.2e-119 434.5 490 50.6
QL11p041571 Quercus lobata HOM05D005713 ORTHO05D007751 2.3e-118 430.3 424 50.7
AagrBONN_evm.TU.Sc2ySwM_228.2211 Anthoceros agrestis HOM05D005713 ORTHO05D007751 6.8e-118 428.7 496 48.8
MCO11G018 Micromonas commoda HOM05D005713 ORTHO05D007751 6.2e-111 405.6 482 46.5
Actinidia17829 Actinidia chinensis HOM05D005713 ORTHO05D007751 5.8e-109 399.1 369 53.9
Sc18g0004720 Simmondsia chinensis HOM05D005713 ORTHO05D007751 1.3e-100 371.3 345 53.3
CDE01G0298 Ceratophyllum demersum HOM05D005713 ORTHO05D007751 3.9e-97 359.8 373 50.1
PRCOL_00003752 Prasinoderma coloniale HOM05D005713 ORTHO05D007751 4.8e-87 326.2 480 41.0
CAN.G322.106 Capsicum annuum HOM05D005713 ORTHO05D007751 9.9e-77 292.0 426 40.6
PGSC0003DMG400025182 Solanum tuberosum HOM05D005713 ORTHO05D007751 4.6e-74 283.1 438 40.0
Solyc01g109330.3 Solanum lycopersicum HOM05D005713 ORTHO05D007751 5.6e-72 276.2 438 39.0
Sopen01g051520 Solanum pennellii HOM05D005713 ORTHO05D007751 2.1e-71 274.2 435 38.9
Nitab4.5_0004280g0110 Nicotiana tabacum HOM05D005713 ORTHO05D007751 3.8e-68 263.5 467 37.3
Peaxi162Scf00016g00106 Petunia axillaris HOM05D005713 ORTHO05D007751 1.3e-65 255.0 391 38.6
Nitab4.5_0004287g0050 Nicotiana tabacum HOM05D005713 ORTHO05D007751 5.1e-65 253.1 467 36.8
TAR381G0857 Trochodendron aralioides HOM05D005713 ORTHO05D007751 8.2e-63 245.7 248 52.0
Glyma.12G045850 Glycine max HOM05D005713 ORTHO05D007751 2.0e-48 198.0 169 56.2
QL07p047677 Quercus lobata HOM05D005713 ORTHO05D007751 4.3e-48 196.8 176 56.2
QL07p047674 Quercus lobata HOM05D005713 ORTHO05D021118 1.2e-29 135.6 108 58.3
FAN19G2312 Fragaria x ananassa HOM05D005713 ORTHO05D007751 1.9e-27 128.3 129 46.5
Glyma.12G045901 Glycine max HOM05D005713 ORTHO05D007751 6.1e-26 123.2 147 45.6
AUR62026246 Chenopodium quinoa HOM05D005713 ORTHO05D138102 1.8e-25 121.7 138 48.6
SEGI_20066 Sequoiadendron giganteum HOM05D005713 ORTHO05D007751 7.5e-24 116.3 172 37.8
Actinidia27913 Actinidia chinensis HOM05D005713 ORTHO05D007751 1.2e-21 109.0 73 71.2
Lj5g0025918 Lotus japonicus HOM05D005713 ORTHO05D236034 1.0e-17 95.9 105 41.9
FvH4_1g29190 Fragaria vesca HOM05D005713 ORTHO05D007751 1.4e-14 85.5 102 45.1
FAN20G0809 Fragaria x ananassa HOM05D005713 ORTHO05D007751 6.6e-12 76.6 57 61.4


User provided reference genes

Program Settings