Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c5_5230 Physcomitrium patens HOM05D007729 ORTHO05D009724 0.0e+00 1288.9 681 100.0
Pp3c6_24770 Physcomitrium patens HOM05D007729 ORTHO05D009724 5.3e-306 1053.9 681 81.6
Pp3c27_4900 Physcomitrium patens HOM05D007729 ORTHO05D009724 2.8e-230 802.4 567 76.2
SEGI_22290 Sequoiadendron giganteum HOM05D007729 ORTHO05D009724 3.3e-151 539.7 568 53.0
PRCOL_00006313 Prasinoderma coloniale HOM05D007729 ORTHO05D009724 1.5e-111 407.9 658 38.8
Nn4g25665 Nelumbo nucifera HOM05D007729 ORTHO05D009724 4.1e-101 373.2 568 40.5
TAR365G0479 Trochodendron aralioides HOM05D007729 ORTHO05D009724 4.6e-100 369.8 557 41.1
PSO761G0658 Papaver somniferum HOM05D007729 ORTHO05D009724 3.1e-96 357.1 561 40.5
Ciclev10000704m.g Citrus clementina HOM05D007729 ORTHO05D009724 6.8e-96 355.9 553 38.0
CDE12G0453 Ceratophyllum demersum HOM05D007729 ORTHO05D009724 8.9e-96 355.5 483 43.7
PSO210G3025 Papaver somniferum HOM05D007729 ORTHO05D009724 1.7e-94 351.3 553 38.5
Dinv24421 Davidia involucrata HOM05D007729 ORTHO05D009724 4.9e-94 349.7 499 41.7
RcHm_v2.0_Chr3g0456781 Rosa chinensis HOM05D007729 ORTHO05D009724 1.9e-93 347.8 500 40.6
Carub.0001s0852 Capsella rubella HOM05D007729 ORTHO05D009724 7.1e-93 345.9 566 38.5
MBI18_g24956_MAGBIO Magnolia biondii HOM05D007729 ORTHO05D009724 1.2e-92 345.1 559 37.6
FvH4_6g07160 Fragaria vesca HOM05D007729 ORTHO05D009724 1.6e-92 344.7 510 41.6
Lj9A208G24 Lonicera japonica HOM05D007729 ORTHO05D009724 2.7e-92 344.0 486 42.2
Nitab4.5_0000368g0330 Nicotiana tabacum HOM05D007729 ORTHO05D009724 2.7e-92 344.0 570 38.8
CANSAT54G0579 Cannabis sativa HOM05D007729 ORTHO05D009724 6.0e-92 342.8 560 38.9
GSVIVG01031211001 Vitis vinifera HOM05D007729 ORTHO05D009724 1.3e-91 341.7 552 38.9
FAN14G4369 Fragaria x ananassa HOM05D007729 ORTHO05D009724 1.7e-91 341.3 575 38.8
THA.LOC104805912 Tarenaya hassleriana HOM05D007729 ORTHO05D009724 2.3e-91 340.9 551 38.3
CAN.G1273.5 Capsicum annuum HOM05D007729 ORTHO05D009724 8.6e-91 339.0 560 39.6
Hma1.2p1_1320F.1_g275420 Hydrangea macrophylla HOM05D007729 ORTHO05D009724 1.1e-90 338.6 511 41.1
Peaxi162Scf00673g00025 Petunia axillaris HOM05D007729 ORTHO05D009724 2.5e-90 337.4 498 41.2
PGSC0003DMG400024735 Solanum tuberosum HOM05D007729 ORTHO05D009724 9.6e-90 335.5 559 38.8
MSTRG.20396 Avicennia marina HOM05D007729 ORTHO05D009724 3.6e-89 333.6 563 38.5
FAN05G4184 Fragaria x ananassa HOM05D007729 ORTHO05D009724 3.6e-89 333.6 574 38.7
Lalb_Chr02g0147931 Lupinus albus HOM05D007729 ORTHO05D009724 6.2e-89 332.8 500 40.4
ATR0706G084 Amborella trichopoda HOM05D007729 ORTHO05D009724 8.1e-89 332.4 559 38.6
Sopen01g043770 Solanum pennellii HOM05D007729 ORTHO05D009724 8.1e-89 332.4 559 38.3
Cpa.g.sc48.137 Carica papaya HOM05D007729 ORTHO05D009724 1.1e-88 332.0 494 41.5
Solyc01g100260.4 Solanum lycopersicum HOM05D007729 ORTHO05D009724 1.4e-88 331.6 559 38.3
Gohir.D13G114300 Gossypium hirsutum HOM05D007729 ORTHO05D009724 2.4e-88 330.9 562 38.6
QL03p018088 Quercus lobata HOM05D007729 ORTHO05D009724 2.4e-88 330.9 556 37.8
Sp1g07780 Schrenkiella parvula HOM05D007729 ORTHO05D009724 2.4e-88 330.9 567 36.9
Manes.09G175100 Manihot esculenta HOM05D007729 ORTHO05D009724 3.1e-88 330.5 508 40.2
Lsat_1_v5_gn_7_73440 Lactuca sativa HOM05D007729 ORTHO05D009724 4.0e-88 330.1 550 38.0
Atru.chr2.143 Acer truncatum HOM05D007729 ORTHO05D009724 6.9e-88 329.3 576 37.0
Gorai.013G128200 Gossypium raimondii HOM05D007729 ORTHO05D009724 1.2e-87 328.6 558 38.4
Potri.005G020100 Populus trichocarpa HOM05D007729 ORTHO05D009724 2.0e-87 327.8 566 37.8
FAN09G4655 Fragaria x ananassa HOM05D007729 ORTHO05D009724 5.8e-87 326.2 578 38.2
Gohir.A13G111500 Gossypium hirsutum HOM05D007729 ORTHO05D009724 5.8e-87 326.2 558 38.0
C08p12530 Brassica napus HOM05D007729 ORTHO05D009724 1.3e-86 325.1 559 37.4
Duzib177G0448 Durio zibethinus HOM05D007729 ORTHO05D009724 1.3e-86 325.1 580 37.6
AL1G19670 Arabidopsis lyrata HOM05D007729 ORTHO05D009724 1.7e-86 324.7 569 37.3
SalBow7G3736 Salvia bowleyana HOM05D007729 ORTHO05D009724 1.7e-86 324.7 573 36.6
Thecc.05G320400 Theobroma cacao HOM05D007729 ORTHO05D009724 8.4e-86 322.4 567 37.6
TWI56G1038 Tripterygium wilfordii HOM05D007729 ORTHO05D009724 8.4e-86 322.4 473 41.0
Nitab4.5_0006072g0050 Nicotiana tabacum HOM05D007729 ORTHO05D009724 1.4e-85 321.6 584 36.6
BolC8t48891H Brassica oleracea HOM05D007729 ORTHO05D009724 4.2e-85 320.1 551 37.7
BraA08t35386Z Brassica rapa HOM05D007729 ORTHO05D009724 4.2e-85 320.1 546 38.1
Aa31LG1G6090 Aethionema arabicum HOM05D007729 ORTHO05D009724 5.4e-85 319.7 515 40.0
Thhalv10007209m.g Eutrema salsugineum HOM05D007729 ORTHO05D009724 5.4e-85 319.7 574 37.6
A08p34750 Brassica napus HOM05D007729 ORTHO05D009724 9.3e-85 318.9 546 37.9
Sabra05G0026100 Salix brachista HOM05D005361 ORTHO05D006518 9.3e-85 318.9 491 38.9
AT1G09195 Arabidopsis thaliana HOM05D007729 ORTHO05D009724 6.0e-84 316.2 504 40.1
HanXRQChr09g0268291 Helianthus annuus HOM05D007729 ORTHO05D009724 6.0e-84 316.2 551 37.2
Actinidia16844 Actinidia chinensis HOM05D007729 ORTHO05D009724 1.0e-83 315.5 555 37.5
PGR031G2787 Punica granatum HOM05D007729 ORTHO05D009724 1.0e-83 315.5 564 37.4
ECA236G3528 Erigeron canadensis HOM05D007729 ORTHO05D009724 1.3e-83 315.1 547 38.4
Cc02_g34750 Coffea canephora HOM05D007729 ORTHO05D009724 5.6e-82 309.7 581 34.9
CSS0040240 Camellia sinensis var. sinensis HOM05D007729 ORTHO05D009724 4.8e-81 306.6 596 36.4
COL.COLO4_04132 Corchorus olitorius HOM05D007729 ORTHO05D009724 4.8e-81 306.6 551 37.2
Migut.B00991 Erythranthe guttata HOM05D007729 ORTHO05D009724 1.8e-80 304.7 575 36.3
Oeu053698.1 Olea europaea HOM05D007729 ORTHO05D009724 1.2e-79 302.0 496 38.1
EL10Ac4g09861 Beta vulgaris HOM05D007729 ORTHO05D009724 2.6e-79 300.8 557 36.3
Haze_04087 Corylus avellana HOM05D007729 ORTHO05D009724 6.4e-78 296.2 511 37.2
DCAR_021068 Daucus carota HOM05D007729 ORTHO05D009724 3.5e-76 290.4 489 38.0
DCAR_021070 Daucus carota HOM05D007729 ORTHO05D009724 3.5e-76 290.4 489 38.0
vmacro01545 Vaccinium macrocarpon HOM05D007729 ORTHO05D009724 1.8e-75 288.1 503 37.2
AUR62000694 Chenopodium quinoa HOM05D007729 ORTHO05D009724 8.1e-73 279.3 551 34.3
AUR62005264 Chenopodium quinoa HOM05D007729 ORTHO05D009724 2.6e-71 274.2 459 38.1
SGA_v2.0_scaffold53G19323 Striga asiatica HOM05D007729 ORTHO05D009724 3.4e-71 273.9 454 37.2
BcaC07g38483 Brassica carinata HOM05D007729 ORTHO05D009724 2.1e-68 264.6 552 34.2
Prupe.6G315600 Prunus persica HOM05D007729 ORTHO05D009724 2.3e-67 261.2 383 39.2
Aqoxy2G02816 Aquilegia oxysepala HOM05D007729 ORTHO05D009724 7.4e-66 256.1 370 41.6
CARHR009150 Cardamine hirsuta HOM05D007729 ORTHO05D009724 5.3e-64 250.0 369 43.1
Duzib147G0321 Durio zibethinus HOM05D007729 ORTHO05D009724 6.0e-60 236.5 375 42.1
Sc16g0008910 Simmondsia chinensis HOM05D007729 ORTHO05D009724 9.1e-48 196.1 397 33.5
Atru.chr2.136 Acer truncatum HOM05D007729 ORTHO05D009724 5.9e-47 193.4 300 39.3
Hund21744 Selenicereus undatus HOM05D007729 ORTHO05D009724 1.9e-45 188.3 503 31.0
vmacro05864 Vaccinium macrocarpon HOM05D007729 ORTHO05D009724 2.4e-40 171.4 333 34.2
vmacro20072 Vaccinium macrocarpon HOM05D007729 ORTHO05D009724 1.5e-29 135.6 411 28.7
Haze_25193 Corylus avellana HOM05D007729 ORTHO05D009724 2.5e-29 134.8 197 40.6
Haze_15474 Corylus avellana HOM05D000683 ORTHO05D000507 1.4e-24 119.0 131 46.6
Aqoxy2G02815 Aquilegia oxysepala HOM05D007729 ORTHO05D009724 1.0e-22 112.8 162 37.0
CARHR009140 Cardamine hirsuta HOM05D007729 ORTHO05D009724 3.7e-17 94.4 196 28.6
Haze_25604 Corylus avellana HOM05D007729 ORTHO05D009724 1.4e-11 75.9 124 41.9
MD12G1208200 Malus domestica HOM05D007729 ORTHO05D009724 1.5e-10 72.4 121 33.1
CBR_g1071 Chara braunii HOM05D036030 ORTHO05D009724 8.3e-09 66.6 169 32.0


User provided reference genes

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