Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c5_5220 Physcomitrium patens HOM05D005563 ORTHO05D006667 1.5e-200 702.6 348 100.0
Mapoly0019s0003 Marchantia polymorpha HOM05D005563 ORTHO05D006667 4.9e-74 282.3 404 42.1
AagrBONN_evm.TU.Sc2ySwM_344.1216 Anthoceros agrestis HOM05D005563 ORTHO05D006667 2.4e-68 263.5 436 40.1
SMO356G0078 Selaginella moellendorffii HOM05D005563 ORTHO05D006667 3.1e-68 263.1 328 47.6
ATR0580G344 Amborella trichopoda HOM05D005563 ORTHO05D006667 1.5e-59 234.2 389 37.5
GSVIVG01037139001 Vitis vinifera HOM05D005563 ORTHO05D006667 2.6e-59 233.4 377 39.5
TAR628G0232 Trochodendron aralioides HOM05D005563 ORTHO05D006667 3.4e-59 233.0 396 37.1
CANSAT64G1925 Cannabis sativa HOM05D005563 ORTHO05D006667 5.8e-59 232.3 396 38.6
Dinv22054 Davidia involucrata HOM05D005563 ORTHO05D006667 4.9e-58 229.2 403 38.5
Aqoxy1G00244 Aquilegia oxysepala HOM05D005563 ORTHO05D006667 1.1e-57 228.0 390 39.0
Duzib177G0343 Durio zibethinus HOM05D005563 ORTHO05D006667 4.2e-57 226.1 394 38.1
Glyma.13G312100 Glycine max HOM05D005563 ORTHO05D006667 1.2e-56 224.6 397 36.3
Nn5g27214 Nelumbo nucifera HOM05D005563 ORTHO05D006667 1.6e-56 224.2 390 37.4
PSO170G2533 Papaver somniferum HOM05D005563 ORTHO05D006667 1.6e-56 224.2 368 38.9
Lj3g0011209 Lotus japonicus HOM05D005563 ORTHO05D006667 2.1e-56 223.8 391 36.8
Potri.013G094800 Populus trichocarpa HOM05D005563 ORTHO05D006667 2.1e-56 223.8 399 37.6
Eucgr.G00337 Eucalyptus grandis HOM05D005563 ORTHO05D006667 6.0e-56 222.2 373 39.1
Medtr8g103020 Medicago truncatula HOM05D005563 ORTHO05D006667 1.0e-55 221.5 399 35.1
Sabra13G0080900 Salix brachista HOM05D005563 ORTHO05D006667 1.0e-55 221.5 393 37.4
Solyc03g026100.1 Solanum lycopersicum HOM05D005563 ORTHO05D006667 1.0e-55 221.5 374 37.7
Sopen03g004940 Solanum pennellii HOM05D005563 ORTHO05D006667 1.3e-55 221.1 366 38.5
PGSC0003DMG400014277 Solanum tuberosum HOM05D005563 ORTHO05D006667 1.3e-55 221.1 375 37.9
PSO017G5640 Papaver somniferum HOM05D005563 ORTHO05D006667 2.3e-55 220.3 361 38.8
TPR.G23443 Trifolium pratense HOM05D005563 ORTHO05D006667 2.3e-55 220.3 406 36.0
CSS0040007 Camellia sinensis var. sinensis HOM05D005563 ORTHO05D006667 3.0e-55 219.9 399 37.3
MBI14_g08074_MAGBIO Magnolia biondii HOM05D005563 ORTHO05D006667 3.0e-55 219.9 389 37.0
Phvul.005G118600 Phaseolus vulgaris HOM05D005563 ORTHO05D006667 3.0e-55 219.9 392 36.7
Prupe.8G002700 Prunus persica HOM05D005563 ORTHO05D006667 3.0e-55 219.9 395 37.5
CAN.G587.23 Capsicum annuum HOM05D005563 ORTHO05D006667 3.9e-55 219.5 379 38.5
DCAR_010113 Daucus carota HOM05D005563 ORTHO05D006667 5.1e-55 219.2 390 35.6
PGR044G0823 Punica granatum HOM05D005563 ORTHO05D006667 5.1e-55 219.2 399 36.8
QL09p001227 Quercus lobata HOM05D005563 ORTHO05D006667 5.1e-55 219.2 399 37.6
arahy.Tifrunner.gnm1.ann1.QV839S Arachis hypogaea HOM05D005563 ORTHO05D006667 6.7e-55 218.8 399 35.3
Cc02_g22680 Coffea canephora HOM05D005563 ORTHO05D006667 6.7e-55 218.8 394 37.3
Psat7g014680 Pisum sativum HOM05D005563 ORTHO05D006667 1.1e-54 218.0 417 35.0
AL2G30920 Arabidopsis lyrata HOM05D005563 ORTHO05D006667 1.5e-54 217.6 377 35.5
CiPaw.04G008700 Carya illinoinensis HOM05D005563 ORTHO05D006667 1.5e-54 217.6 392 37.0
Atru.chr13.2584 Acer truncatum HOM05D005563 ORTHO05D006667 1.9e-54 217.2 392 36.0
AT5G24670 Arabidopsis thaliana HOM05D005563 ORTHO05D006667 2.5e-54 216.9 379 36.1
Ciclev10020232m.g Citrus clementina HOM05D005563 ORTHO05D006667 2.5e-54 216.9 399 36.1
PSO761G0451 Papaver somniferum HOM05D005563 ORTHO05D006667 2.5e-54 216.9 406 35.0
RcHm_v2.0_Chr6g0249561 Rosa chinensis HOM05D005563 ORTHO05D006667 3.3e-54 216.5 395 35.9
DCAR_027509 Daucus carota HOM05D005563 ORTHO05D006667 4.3e-54 216.1 389 36.0
Migut.G00338 Erythranthe guttata HOM05D005563 ORTHO05D006667 4.3e-54 216.1 378 37.6
Rhsim01G0058900 Rhododendron simsii HOM05D005563 ORTHO05D006667 7.4e-54 215.3 395 36.7
CSS0002080 Camellia sinensis var. sinensis HOM05D005563 ORTHO05D006667 9.6e-54 214.9 399 36.8
VMungo1080G1448 Vigna mungo HOM05D005563 ORTHO05D006667 9.6e-54 214.9 391 35.5
DCAR_001180 Daucus carota HOM05D005563 ORTHO05D006667 1.3e-53 214.5 396 35.1
Gorai.009G262600 Gossypium raimondii HOM05D005563 ORTHO05D006667 1.3e-53 214.5 393 36.4
MD10G1001500 Malus domestica HOM05D005563 ORTHO05D006667 1.3e-53 214.5 392 37.0
FvH4_2g00270 Fragaria vesca HOM05D005563 ORTHO05D006667 1.6e-53 214.2 392 36.5
ECA232G0495 Erigeron canadensis HOM05D004116 ORTHO05D004734 2.1e-53 213.8 369 37.7
AL1G12770 Arabidopsis lyrata HOM05D005563 ORTHO05D006667 2.8e-53 213.4 377 35.5
PSO407G0243 Papaver somniferum HOM05D005563 ORTHO05D006667 3.7e-53 213.0 362 38.7
A07p30780 Brassica napus HOM05D005563 ORTHO05D006667 6.2e-53 212.2 388 36.1
Carub.0002s1819 Capsella rubella HOM05D005563 ORTHO05D006667 8.1e-53 211.8 378 34.4
C06p35680 Brassica napus HOM05D005563 ORTHO05D006667 1.1e-52 211.5 396 35.6
Rhsim01G0059200 Rhododendron simsii HOM05D005563 ORTHO05D006667 1.1e-52 211.5 395 36.5
Sp5g26490 Schrenkiella parvula HOM05D005563 ORTHO05D006667 1.1e-52 211.5 398 36.2
Nitab4.5_0006591g0020 Nicotiana tabacum HOM05D005563 ORTHO05D006667 1.4e-52 211.1 391 36.1
Oeu009445.1 Olea europaea HOM05D005563 ORTHO05D006667 1.4e-52 211.1 390 36.2
Aa31LG4G9220 Aethionema arabicum HOM05D005563 ORTHO05D006667 1.8e-52 210.7 398 36.2
CARHR064610 Cardamine hirsuta HOM05D005563 ORTHO05D006667 1.8e-52 210.7 390 34.6
vmacro07741 Vaccinium macrocarpon HOM05D005563 ORTHO05D006667 1.8e-52 210.7 394 36.3
Carub.0004s0662 Capsella rubella HOM05D005563 ORTHO05D006667 2.4e-52 210.3 371 36.4
Thecc.05G149300 Theobroma cacao HOM05D005563 ORTHO05D006667 2.4e-52 210.3 394 35.3
BcaB03g14889 Brassica carinata HOM05D005563 ORTHO05D006667 3.1e-52 209.9 394 36.0
BcaC08g45784 Brassica carinata HOM05D005563 ORTHO05D006667 3.1e-52 209.9 386 35.5
CAN.G769.9 Capsicum annuum HOM05D005563 ORTHO05D006667 3.1e-52 209.9 379 37.5
Oeu019017.1 Olea europaea HOM05D005563 ORTHO05D006667 3.1e-52 209.9 395 35.7
Thhalv10018623m.g Eutrema salsugineum HOM05D005563 ORTHO05D006667 4.0e-52 209.5 390 35.1
FAN24G3564 Fragaria x ananassa HOM05D005563 ORTHO05D006667 6.9e-52 208.8 409 35.0
BolC6t38691H Brassica oleracea HOM05D005563 ORTHO05D006667 9.0e-52 208.4 400 35.2
Cfa007306 Carpinus fangiana HOM05D005563 ORTHO05D006667 1.2e-51 208.0 402 35.8
Actinidia29363 Actinidia chinensis HOM05D005563 ORTHO05D006667 1.5e-51 207.6 386 35.2
SGA_v2.0_scaffold277G46672 Striga asiatica HOM05D005563 ORTHO05D006667 1.5e-51 207.6 367 38.7
Lalb_Chr24g0393341 Lupinus albus HOM05D005563 ORTHO05D006667 2.0e-51 207.2 397 34.5
BcaB03g15600 Brassica carinata HOM05D005563 ORTHO05D006667 5.8e-51 205.7 387 36.2
CsaV3_6G042510 Cucumis sativus L. HOM05D005563 ORTHO05D006667 7.6e-51 205.3 400 35.2
BraA07t30715Z Brassica rapa HOM05D005563 ORTHO05D006667 1.0e-50 204.9 398 34.9
Lsat_1_v5_gn_4_170241 Lactuca sativa HOM05D005563 ORTHO05D006667 1.7e-50 204.1 373 36.5
THA.LOC104825030 Tarenaya hassleriana HOM05D005563 ORTHO05D006667 3.8e-50 203.0 377 34.7
ClCG11G000440 Citrullus lanatus HOM05D005563 ORTHO05D006667 1.1e-49 201.4 402 34.8
Hund26934 Selenicereus undatus HOM05D005563 ORTHO05D006667 2.7e-48 196.8 389 36.8
Manes.18G108800 Manihot esculenta HOM05D005563 ORTHO05D006667 7.9e-48 195.3 348 34.5
Nitab4.5_0001489g0080 Nicotiana tabacum HOM05D005563 ORTHO05D006667 3.9e-47 193.0 357 35.0
TAR633G2728 Trochodendron aralioides HOM05D005563 ORTHO05D006667 1.5e-46 191.0 359 34.3
HanXRQChr15g0488461 Helianthus annuus HOM05D005563 ORTHO05D006667 1.3e-45 188.0 324 37.3
Peaxi162Scf00078g01133 Petunia axillaris HOM05D005563 ORTHO05D006667 2.4e-44 183.7 345 35.1
AUR62023340 Chenopodium quinoa HOM05D005563 ORTHO05D006667 2.2e-42 177.2 387 34.4
Nitab4.5_0000079g0140 Nicotiana tabacum HOM05D005563 ORTHO05D006667 6.5e-42 175.6 392 33.7
arahy.Tifrunner.gnm1.ann1.NB4SND Arachis hypogaea HOM05D005563 ORTHO05D006667 3.2e-41 173.3 420 31.7
Sed0012109 Sechium edule HOM05D005563 ORTHO05D006667 7.2e-41 172.2 334 35.0
unitig_32.g10817 Utricularia gibba HOM05D005563 ORTHO05D006667 5.1e-39 166.0 353 33.7
Haze_14007 Corylus avellana HOM05D005563 ORTHO05D006667 1.5e-38 164.5 514 28.4
MCO11G544 Micromonas commoda HOM05D005563 ORTHO05D006667 1.4e-36 157.9 318 33.6
CDE04G2046 Ceratophyllum demersum HOM05D005563 ORTHO05D006667 5.3e-36 156.0 228 42.5
TWI18G0160 Tripterygium wilfordii HOM05D005563 ORTHO05D006667 5.3e-36 156.0 400 33.0
CBR_g50242 Chara braunii HOM05D005563 ORTHO05D006667 1.5e-35 154.5 588 25.9
AUR62013814 Chenopodium quinoa HOM05D005563 ORTHO05D006667 3.4e-35 153.3 475 29.5
AUR62037990 Chenopodium quinoa HOM05D005563 ORTHO05D006667 2.5e-33 147.1 309 35.6
BcaB03g14888 Brassica carinata HOM05D005563 ORTHO05D006667 4.2e-33 146.4 351 33.0
EL10Ac1g00691 Beta vulgaris HOM05D005563 ORTHO05D006667 2.3e-31 140.6 363 31.1
CBR_g8323 Chara braunii HOM05D005563 ORTHO05D006667 5.1e-31 139.4 619 24.2
SHI17431 Sapria himalayana HOM05D005563 ORTHO05D006667 1.1e-30 138.3 223 39.5
HPP92_009712 Vanilla planifolia HOM05D005563 ORTHO05D006667 2.8e-29 133.7 155 47.1
Zm00001eb088860 Zea mays HOM05D005563 ORTHO05D006667 3.7e-29 133.3 150 48.0
TPR.G11352 Trifolium pratense HOM05D005563 ORTHO05D006667 5.3e-28 129.4 269 33.8
Sc19g0006900 Simmondsia chinensis HOM05D005563 ORTHO05D006667 2.0e-27 127.5 259 34.0
MELO3C022956.2 Cucumis melo HOM05D005563 ORTHO05D006667 2.6e-27 127.1 347 29.4
Cre10.g439200 Chlamydomonas reinhardtii HOM05D005563 ORTHO05D006667 2.9e-26 123.6 408 27.7
Gohir.A05G248000 Gossypium hirsutum HOM05D005563 ORTHO05D006667 2.5e-25 120.6 303 31.4
Gohir.D05G248801 Gossypium hirsutum HOM05D005563 ORTHO05D006667 3.2e-25 120.2 304 31.6
PRCOL_00003298 Prasinoderma coloniale HOM05D005563 ORTHO05D006667 1.8e-23 114.4 351 31.6
MBI14_g20078_MAGBIO Magnolia biondii HOM05D005563 ORTHO05D006667 5.2e-23 112.8 77 63.6
Eucgr.C03620 Eucalyptus grandis HOM05D005563 ORTHO05D006667 6.7e-23 112.5 268 32.5
MBI13_g08747_MAGBIO Magnolia biondii HOM05D005563 ORTHO05D006667 1.5e-22 111.3 74 64.9
TPR.G11340 Trifolium pratense HOM05D005563 ORTHO05D006667 2.0e-22 110.9 72 66.7
BolC6t39597H Brassica oleracea HOM05D005563 ORTHO05D006667 5.7e-22 109.4 316 29.1
MBI08_g10505_MAGBIO Magnolia biondii HOM05D000152 ORTHO05D006667 9.7e-22 108.6 76 64.5
MBI15_g36474_MAGBIO Magnolia biondii HOM05D005563 ORTHO05D006667 8.2e-21 105.5 77 58.4
Cpa.g.sc249.8 Carica papaya HOM05D005563 ORTHO05D006667 1.4e-20 104.8 151 39.7
FAN19G1429 Fragaria x ananassa HOM05D005563 ORTHO05D006667 4.1e-20 103.2 416 28.1
Eucgr.C03640 Eucalyptus grandis HOM05D005563 ORTHO05D006667 1.6e-19 101.3 74 60.8
FAN20G2324 Fragaria x ananassa HOM05D005563 ORTHO05D006667 4.8e-13 79.7 54 66.7
COL.COLO4_34067 Corchorus olitorius HOM05D005563 ORTHO05D006667 3.1e-12 77.0 247 26.7
Ca_17321_v3 Cicer arietinum L. HOM05D005563 ORTHO05D006667 2.7e-11 73.9 285 28.1
Eucgr.C03478 Eucalyptus grandis HOM05D005563 ORTHO05D006667 1.2e-08 65.1 179 32.4
Actinidia03534 Actinidia chinensis HOM05D005563 ORTHO05D006667 6.1e-08 62.8 187 29.4
Nn3g18876 Nelumbo nucifera HOM05D003832 ORTHO05D004365 2.6e-06 57.4 174 28.2
Thecc.10G189600 Theobroma cacao HOM05D005563 ORTHO05D006667 2.6e-06 57.4 86 44.2


User provided reference genes

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