Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c5_4790 Physcomitrium patens HOM05D007710 ORTHO05D004022 5.4e-46 187.2 87 100.0
ATR0057G097 Amborella trichopoda HOM05D007710 ORTHO05D004022 2.2e-31 138.7 76 76.3
Eucgr.A02986 Eucalyptus grandis HOM05D007710 ORTHO05D004022 2.9e-31 138.3 82 74.4
Potri.013G078866 Populus trichocarpa HOM05D007710 ORTHO05D004022 2.9e-31 138.3 76 77.6
HanXRQChr04g0105361 Helianthus annuus HOM05D007710 ORTHO05D004022 3.7e-31 137.9 82 73.2
Nitab4.5_0000021g0800 Nicotiana tabacum HOM05D007710 ORTHO05D004022 3.7e-31 137.9 80 71.2
DCAR_009023 Daucus carota HOM05D007710 ORTHO05D004022 4.9e-31 137.5 83 69.9
PSO063G4155 Papaver somniferum HOM05D007710 ORTHO05D004022 4.9e-31 137.5 76 76.3
TAR375G0377 Trochodendron aralioides HOM05D007710 ORTHO05D004022 4.9e-31 137.5 78 74.4
CAN.G1131.30 Capsicum annuum HOM05D007710 ORTHO05D004022 6.4e-31 137.1 76 73.7
Aqoxy3G02299 Aquilegia oxysepala HOM05D007710 ORTHO05D004022 8.3e-31 136.7 76 76.3
Lj3g0011322 Lotus japonicus HOM05D007710 ORTHO05D004022 8.3e-31 136.7 76 75.0
Nitab4.5_0004530g0090 Nicotiana tabacum HOM05D007710 ORTHO05D004022 8.3e-31 136.7 80 70.0
Phvul.011G019000 Phaseolus vulgaris HOM05D007710 ORTHO05D004022 1.1e-30 136.3 76 75.0
PGR042G1372 Punica granatum HOM05D007710 ORTHO05D004022 1.1e-30 136.3 78 74.4
RcHm_v2.0_Chr1g0384511 Rosa chinensis HOM05D007710 ORTHO05D004022 1.1e-30 136.3 82 69.5
CSS0005120 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 1.4e-30 136.0 76 75.0
CSS0038916 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 1.4e-30 136.0 76 75.0
Ciclev10033194m.g Citrus clementina HOM05D007710 ORTHO05D004022 1.4e-30 136.0 76 75.0
FvH4_7g34150 Fragaria vesca HOM05D007710 ORTHO05D004022 1.4e-30 136.0 76 73.7
TPR.G19627 Trifolium pratense HOM05D007710 ORTHO05D004022 1.4e-30 136.0 83 67.5
PGSC0003DMG400003164 Solanum tuberosum HOM05D007710 ORTHO05D004022 1.9e-30 135.6 76 73.7
PGSC0003DMG402026486 Solanum tuberosum HOM05D007710 ORTHO05D004022 1.9e-30 135.6 76 73.7
PSO782G0287 Papaver somniferum HOM05D007710 ORTHO05D004022 2.4e-30 135.2 76 73.7
arahy.Tifrunner.gnm1.ann1.GY8AT6 Arachis hypogaea HOM05D007710 ORTHO05D004022 3.2e-30 134.8 76 73.7
FAN03G2015 Fragaria x ananassa HOM05D007710 ORTHO05D004022 3.2e-30 134.8 76 72.4
MD01G1238100 Malus domestica HOM05D007710 ORTHO05D004022 3.2e-30 134.8 76 73.7
Thecc.05G219200 Theobroma cacao HOM05D007710 ORTHO05D004022 3.2e-30 134.8 76 75.0
GSVIVG01024345001 Vitis vinifera HOM05D007710 ORTHO05D004022 4.1e-30 134.4 76 73.7
Actinidia08760 Actinidia chinensis HOM05D007710 ORTHO05D004022 5.4e-30 134.0 77 70.1
MD01G1238400 Malus domestica HOM05D007710 ORTHO05D004022 5.4e-30 134.0 76 73.7
Prupe.2G328300 Prunus persica HOM05D007710 ORTHO05D004022 5.4e-30 134.0 76 72.4
Solyc03g097200.3 Solanum lycopersicum HOM05D007710 ORTHO05D004022 5.4e-30 134.0 76 72.4
Sopen03g027960 Solanum pennellii HOM05D007710 ORTHO05D004022 5.4e-30 134.0 76 72.4
TWI32G0404 Tripterygium wilfordii HOM05D007710 ORTHO05D004022 5.4e-30 134.0 76 73.7
arahy.Tifrunner.gnm1.ann1.U0IDC3 Arachis hypogaea HOM05D007710 ORTHO05D004022 7.0e-30 133.7 76 72.4
Duzib128G0150 Durio zibethinus HOM05D007710 ORTHO05D004022 7.0e-30 133.7 76 75.0
ECA233G0318 Erigeron canadensis HOM05D007710 ORTHO05D004022 7.0e-30 133.7 74 74.3
Gohir.A13G101700 Gossypium hirsutum HOM05D007710 ORTHO05D004022 7.0e-30 133.7 76 75.0
Hma1.2p1_0649F.1_g195220 Hydrangea macrophylla HOM05D007710 ORTHO05D004022 7.0e-30 133.7 74 75.7
Peaxi162Scf00516g00641 Petunia axillaris HOM05D007710 ORTHO05D004022 7.0e-30 133.7 80 68.8
Manes.09G128500 Manihot esculenta HOM05D007710 ORTHO05D004022 9.2e-30 133.3 74 77.0
Medtr4g478210 Medicago truncatula HOM05D007710 ORTHO05D004022 9.2e-30 133.3 74 74.3
Nn6g33555 Nelumbo nucifera HOM05D007710 ORTHO05D004022 9.2e-30 133.3 83 68.7
THA.LOC104805715 Tarenaya hassleriana HOM05D007710 ORTHO05D004022 9.2e-30 133.3 79 70.9
Cc02_g00160 Coffea canephora HOM05D007710 ORTHO05D004022 1.2e-29 132.9 76 71.1
Atru.chr12.1914 Acer truncatum HOM05D007710 ORTHO05D004022 1.6e-29 132.5 76 71.1
Cfa016067 Carpinus fangiana HOM05D003442 ORTHO05D004005 1.6e-29 132.5 83 67.5
Lsat_1_v5_gn_2_60801 Lactuca sativa HOM05D007710 ORTHO05D004022 1.6e-29 132.5 74 73.0
Sed0013213 Sechium edule HOM05D007710 ORTHO05D004022 1.6e-29 132.5 76 73.7
Aa31LG2G2200 Aethionema arabicum HOM05D007710 ORTHO05D004022 2.1e-29 132.1 82 69.5
Manes.08G064400 Manihot esculenta HOM05D007710 ORTHO05D004022 2.1e-29 132.1 76 72.4
HPP92_014617 Vanilla planifolia HOM05D007710 ORTHO05D004022 2.1e-29 132.1 76 69.7
Glyma.12G016700 Glycine max HOM05D007710 ORTHO05D004022 3.5e-29 131.3 76 71.1
Sp5g19360 Schrenkiella parvula HOM05D007710 ORTHO05D004022 3.5e-29 131.3 76 72.4
Haze_00383 Corylus avellana HOM05D007710 ORTHO05D004022 6.0e-29 130.6 83 66.3
Psat7g170120 Pisum sativum HOM05D007710 ORTHO05D004022 7.8e-29 130.2 82 67.1
BcaB03g15335 Brassica carinata HOM05D007710 ORTHO05D004022 1.0e-28 129.8 76 71.1
BraA07t30900Z Brassica rapa HOM05D007710 ORTHO05D004022 1.0e-28 129.8 83 67.5
A07p32740 Brassica napus HOM05D007710 ORTHO05D004022 1.3e-28 129.4 76 71.1
CiPaw.06G035400 Carya illinoinensis HOM05D007710 ORTHO05D004022 2.3e-28 128.6 76 69.7
FAN10G2135 Fragaria x ananassa HOM05D003442 ORTHO05D004005 2.3e-28 128.6 76 71.1
Mapoly0120s0048 Marchantia polymorpha HOM05D007710 ORTHO05D004022 2.3e-28 128.6 76 69.7
AT1G65000 Arabidopsis thaliana HOM05D007710 ORTHO05D004022 3.0e-28 128.3 82 65.9
CsaV3_2G036650 Cucumis sativus L. HOM05D007710 ORTHO05D004022 6.6e-28 127.1 82 65.9
MELO3C021857.2 Cucumis melo HOM05D007710 ORTHO05D004022 8.6e-28 126.7 82 65.9
Hund09805 Selenicereus undatus HOM05D007710 ORTHO05D004022 8.6e-28 126.7 76 68.4
EL10Ac3g05053 Beta vulgaris HOM05D007710 ORTHO05D004022 1.1e-27 126.3 76 68.4
unitig_747.g21335 Utricularia gibba HOM05D007710 ORTHO05D004022 1.1e-27 126.3 76 69.7
AL2G19620 Arabidopsis lyrata HOM05D007710 ORTHO05D004022 1.5e-27 125.9 82 64.6
CARHR057330 Cardamine hirsuta HOM05D007710 ORTHO05D004022 1.5e-27 125.9 76 69.7
MD06G1024400 Malus domestica HOM05D007710 ORTHO05D004022 1.5e-27 125.9 76 69.7
CARHR056450 Cardamine hirsuta HOM05D007710 ORTHO05D004022 1.9e-27 125.6 78 67.9
AUR62028202 Chenopodium quinoa HOM05D007710 ORTHO05D004022 1.9e-27 125.6 76 68.4
Migut.F00935 Erythranthe guttata HOM05D007710 ORTHO05D004022 1.9e-27 125.6 84 67.9
BolC6t38987H Brassica oleracea HOM05D007710 ORTHO05D004022 9.5e-27 123.2 82 65.9
C06p38950 Brassica napus HOM05D007710 ORTHO05D004022 4.0e-25 117.9 82 62.2
Rhsim03G0223400 Rhododendron simsii HOM05D007710 ORTHO05D004022 2.4e-22 108.6 120 44.2
Ah.04g156350 Amaranthus hybridus HOM05D007710 ORTHO05D004022 1.6e-21 105.9 127 43.3
SMO347G0449 Selaginella moellendorffii HOM05D007710 ORTHO05D004022 2.1e-18 95.5 76 56.6
RcHm_v2.0_Chr2g0135851 Rosa chinensis HOM05D007710 ORTHO05D004022 1.4e-17 92.8 70 57.1
Hma1.2p1_0649F.1_g195210 Hydrangea macrophylla HOM05D007710 ORTHO05D004022 1.7e-15 85.9 42 81.0
Glyma.11G108600 Glycine max HOM05D007710 ORTHO05D004022 1.9e-14 82.4 40 80.0
SalBow2G0781 Salvia bowleyana HOM05D007710 ORTHO05D004022 2.1e-13 79.0 54 64.8
COL.COLO4_15187 Corchorus olitorius HOM05D007710 ORTHO05D004022 4.6e-13 77.8 39 79.5
Os03g0857750 Oryza sativa ssp. japonica HOM05D007710 ORTHO05D004022 4.6e-13 77.8 44 70.5
ClCG09G017200 Citrullus lanatus HOM05D007710 ORTHO05D004022 7.8e-13 77.0 191 27.7
Duzib133G1094 Durio zibethinus HOM05D007646 ORTHO05D004022 1.1e-11 73.2 80 43.8
BolC6t36994H Brassica oleracea HOM05D007646 ORTHO05D004022 1.9e-11 72.4 82 41.5
BcaC08g44354 Brassica carinata HOM05D007646 ORTHO05D004022 3.3e-11 71.6 82 41.5
BraA07t29660Z Brassica rapa HOM05D007646 ORTHO05D004022 3.3e-11 71.6 82 42.7
Carub.0005s1235 Capsella rubella HOM05D007646 ORTHO05D004022 3.3e-11 71.6 85 38.8
AT5G38060 Arabidopsis thaliana HOM05D007646 ORTHO05D004022 5.6e-11 70.9 86 38.4
CANSAT54G0187 Cannabis sativa HOM05D007646 ORTHO05D004022 5.6e-11 70.9 82 40.2
ClCG05G010760 Citrullus lanatus HOM05D007646 ORTHO05D004022 7.3e-11 70.5 80 41.2
Cc07_g08290 Coffea canephora HOM05D007646 ORTHO05D004022 7.3e-11 70.5 85 38.8
AL7G52880 Arabidopsis lyrata HOM05D007646 ORTHO05D004022 1.3e-10 69.7 86 37.2
CiPaw.03G067200 Carya illinoinensis HOM05D007646 ORTHO05D004022 1.3e-10 69.7 80 42.5
Glyma.02G091100 Glycine max HOM05D007646 ORTHO05D004022 1.3e-10 69.7 80 43.8
Solyc02g063300.3 Solanum lycopersicum HOM05D007646 ORTHO05D004022 1.3e-10 69.7 80 41.2
Sopen02g014370 Solanum pennellii HOM05D007646 ORTHO05D004022 1.3e-10 69.7 80 41.2
BcaB02g08021 Brassica carinata HOM05D007646 ORTHO05D004022 1.6e-10 69.3 82 40.2
MSTRG.3534 Avicennia marina HOM05D007646 ORTHO05D004022 2.1e-10 68.9 80 41.2
Eucgr.F02813 Eucalyptus grandis HOM05D007646 ORTHO05D004022 2.1e-10 68.9 80 42.5
PGSC0003DMG400010412 Solanum tuberosum HOM05D007646 ORTHO05D004022 2.1e-10 68.9 80 42.5
VMungo1383G0770 Vigna mungo HOM05D007646 ORTHO05D004022 2.1e-10 68.9 80 42.5
Thhalv10027987m.g Eutrema salsugineum HOM05D007646 ORTHO05D004022 2.8e-10 68.6 86 38.4
Gohir.A07G075950 Gossypium hirsutum HOM05D007646 ORTHO05D004022 2.8e-10 68.6 80 41.2
Sp7g04020 Schrenkiella parvula HOM05D007646 ORTHO05D004022 2.8e-10 68.6 86 37.2
SMO270G0036 Selaginella moellendorffii HOM05D007646 ORTHO05D004022 2.8e-10 68.6 80 40.0
Hund13692 Selenicereus undatus HOM05D007646 ORTHO05D004022 2.8e-10 68.6 79 43.0
THA.LOC104822453 Tarenaya hassleriana HOM05D007646 ORTHO05D004022 2.8e-10 68.6 80 41.2
CARHR214680 Cardamine hirsuta HOM05D007646 ORTHO05D004022 3.6e-10 68.2 86 36.0
Gohir.D07G080400 Gossypium hirsutum HOM05D007646 ORTHO05D004022 3.6e-10 68.2 80 41.2
Gorai.001G085500 Gossypium raimondii HOM05D007646 ORTHO05D004022 3.6e-10 68.2 80 41.2
Phvul.008G009900 Phaseolus vulgaris HOM05D007646 ORTHO05D004022 3.6e-10 68.2 79 43.0
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 4.8e-10 67.8 86 37.2
HanXRQChr12g0375971 Helianthus annuus HOM05D007646 ORTHO05D004022 6.2e-10 67.4 80 41.2
Lsat_1_v5_gn_3_83021 Lactuca sativa HOM05D007646 ORTHO05D004022 6.2e-10 67.4 80 41.2
Manes.01G114800 Manihot esculenta HOM05D007646 ORTHO05D004022 6.2e-10 67.4 80 41.2
Os08g0364500 Oryza sativa ssp. japonica HOM05D007646 ORTHO05D004022 6.2e-10 67.4 80 41.2
Thecc.04G124000 Theobroma cacao HOM05D007646 ORTHO05D004022 6.2e-10 67.4 79 41.8
arahy.Tifrunner.gnm1.ann1.27TPXA Arachis hypogaea HOM05D007646 ORTHO05D004022 8.1e-10 67.0 80 41.2
arahy.Tifrunner.gnm1.ann1.FGX6FG Arachis hypogaea HOM05D007646 ORTHO05D004022 8.1e-10 67.0 80 41.2
Lj1g0016280 Lotus japonicus HOM05D007646 ORTHO05D004022 8.1e-10 67.0 80 41.2
Haze_14207 Corylus avellana HOM05D007646 ORTHO05D004022 1.1e-09 66.6 80 40.0
Manes.02G073800 Manihot esculenta HOM05D007646 ORTHO05D004022 1.1e-09 66.6 80 40.0
Psat3g096480 Pisum sativum HOM05D007646 ORTHO05D004022 1.1e-09 66.6 80 41.2
AagrBONN_evm.TU.Sc2ySwM_117.3189 Anthoceros agrestis HOM05D007646 ORTHO05D004022 1.4e-09 66.2 80 37.5
Aqoxy3G00145 Aquilegia oxysepala HOM05D007646 ORTHO05D004022 1.4e-09 66.2 82 37.8
Hma1.2p1_0283F.1_g113630 Hydrangea macrophylla HOM05D007646 ORTHO05D004022 1.4e-09 66.2 79 41.8
Prupe.3G151500 Prunus persica HOM05D007646 ORTHO05D004022 1.4e-09 66.2 83 37.3
HPP92_011530 Vanilla planifolia HOM05D007646 ORTHO05D004022 1.4e-09 66.2 79 39.2
ECA238G3641 Erigeron canadensis HOM05D007710 ORTHO05D004022 1.8e-09 65.9 40 67.5
PSO017G6311 Papaver somniferum HOM05D007646 ORTHO05D004022 1.8e-09 65.9 81 38.3
SGA_v2.0_scaffold329G48872 Striga asiatica HOM05D007646 ORTHO05D004022 1.8e-09 65.9 80 38.8
TPR.G28547 Trifolium pratense HOM05D007646 ORTHO05D004022 1.8e-09 65.9 80 41.2
Ciclev10013088m.g Citrus clementina HOM05D007646 ORTHO05D004022 2.4e-09 65.5 82 39.0
Lalb_Chr10g0091581 Lupinus albus HOM05D007646 ORTHO05D004022 2.4e-09 65.5 80 41.2
ATR0326G025 Amborella trichopoda HOM05D007646 ORTHO05D004022 3.1e-09 65.1 80 37.5
PSO478G0345 Papaver somniferum HOM05D007646 ORTHO05D004022 3.1e-09 65.1 83 38.6
Sed0004781 Sechium edule HOM05D007646 ORTHO05D004022 3.1e-09 65.1 81 39.5
Cpa.g.sc116.10 Carica papaya HOM05D007646 ORTHO05D004022 4.0e-09 64.7 82 37.8
QL07p035402 Quercus lobata HOM05D007646 ORTHO05D004022 4.0e-09 64.7 80 37.5
Sc11g0008560 Simmondsia chinensis HOM05D007646 ORTHO05D004022 4.0e-09 64.7 81 39.5
Zm00001eb042800 Zea mays HOM05D007646 ORTHO05D004022 4.0e-09 64.7 84 39.3
FvH4_4g24890 Fragaria vesca HOM05D007646 ORTHO05D004022 5.3e-09 64.3 80 40.0
FAN07G2610 Fragaria x ananassa HOM05D007646 ORTHO05D004022 5.3e-09 64.3 80 40.0
FAN12G1679 Fragaria x ananassa HOM05D007646 ORTHO05D004022 5.3e-09 64.3 80 40.0
FAN17G0138 Fragaria x ananassa HOM05D007646 ORTHO05D004022 5.3e-09 64.3 80 40.0
RcHm_v2.0_Chr3g0493581 Rosa chinensis HOM05D007646 ORTHO05D004022 5.3e-09 64.3 80 40.0
vmacro05494 Vaccinium macrocarpon HOM05D007646 ORTHO05D004022 5.3e-09 64.3 80 38.8
GSVIVG01030896001 Vitis vinifera HOM05D007646 ORTHO05D004022 5.3e-09 64.3 84 36.9
Atru.chr1.1768 Acer truncatum HOM05D007646 ORTHO05D004022 6.9e-09 63.9 80 38.8
Sc09g0007050 Simmondsia chinensis HOM05D007710 ORTHO05D004022 9.0e-09 63.5 38 68.4
Pp3c20_8520 Physcomitrium patens HOM05D007646 ORTHO05D004022 1.2e-08 63.2 85 35.3
Potri.017G122500 Populus trichocarpa HOM05D007646 ORTHO05D004022 1.2e-08 63.2 80 37.5
A07p19560 Brassica napus HOM05D007646 ORTHO05D004022 1.5e-08 62.8 105 35.2
Migut.L00480 Erythranthe guttata HOM05D007646 ORTHO05D004022 1.5e-08 62.8 85 36.5
TAR629G1988 Trochodendron aralioides HOM05D007646 ORTHO05D004022 1.5e-08 62.8 80 36.2
Cre13.g605700 Chlamydomonas reinhardtii HOM05D007646 ORTHO05D004022 2.0e-08 62.4 86 40.7
Rhsim10G0078400 Rhododendron simsii HOM05D007646 ORTHO05D004022 2.0e-08 62.4 79 38.0
CBR_g4014 Chara braunii HOM05D007646 ORTHO05D004022 3.4e-08 61.6 81 35.8
C06p17970 Brassica napus HOM05D007646 ORTHO05D004022 4.4e-08 61.2 110 34.5
TWI77G0633 Tripterygium wilfordii HOM05D007646 ORTHO05D004022 4.4e-08 61.2 83 34.9
MSTRG.6 Avicennia marina HOM05D007710 ORTHO05D004022 9.9e-08 60.1 44 56.8
Cfa007863 Carpinus fangiana HOM05D007646 ORTHO05D004022 1.3e-07 59.7 102 32.4
Dinv29135 Davidia involucrata HOM05D007710 ORTHO05D004022 2.2e-07 58.9 30 76.7
DCAR_010731 Daucus carota HOM05D007646 ORTHO05D004022 2.9e-07 58.5 96 32.3
Nitab4.5_0000036g0620 Nicotiana tabacum HOM05D007646 ORTHO05D004022 2.9e-07 58.5 80 41.2
QL09p021214 Quercus lobata HOM05D007710 ORTHO05D004022 2.9e-07 58.5 43 58.1
EL10Ac2g04503 Beta vulgaris HOM05D007646 ORTHO05D004022 3.8e-07 58.2 85 32.9
CDE06G1656 Ceratophyllum demersum HOM05D007646 ORTHO05D004022 6.4e-07 57.4 83 34.9
FAN01G0952 Fragaria x ananassa HOM05D002657 ORTHO05D003059 1.1e-06 56.6 37 59.5
SalBow2G2426 Salvia bowleyana HOM05D007710 ORTHO05D004022 1.4e-06 56.2 43 60.5
COL.COLO4_27123 Corchorus olitorius HOM05D003498 ORTHO05D004191 2.4e-06 55.5 70 40.0
SEGI_34374 Sequoiadendron giganteum HOM05D007646 ORTHO05D004022 3.2e-06 55.1 77 33.8


User provided reference genes

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