Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c5_4480 Physcomitrium patens HOM05D005585 ORTHO05D006905 3.4e-200 701.4 353 100.0
Mapoly0094s0071 Marchantia polymorpha HOM05D005585 ORTHO05D006905 2.6e-75 286.6 301 47.8
SMO147G0391 Selaginella moellendorffii HOM05D005585 ORTHO05D006905 3.7e-69 266.2 295 45.8
Hund22311 Selenicereus undatus HOM05D005585 ORTHO05D006905 4.5e-67 259.2 341 42.8
TAR628G0421 Trochodendron aralioides HOM05D005585 ORTHO05D006905 1.3e-66 257.7 331 43.2
FvH4_5g17500 Fragaria vesca HOM05D005585 ORTHO05D006905 5.0e-66 255.8 346 43.1
Nn5g30598 Nelumbo nucifera HOM05D005585 ORTHO05D006905 5.0e-66 255.8 332 44.3
BcaB06g25853 Brassica carinata HOM05D005585 ORTHO05D006905 1.1e-65 254.6 351 40.7
PSO017G0826 Papaver somniferum HOM05D005585 ORTHO05D006905 2.5e-65 253.4 335 45.1
PSO170G1171 Papaver somniferum HOM05D005585 ORTHO05D006905 3.2e-65 253.1 362 43.1
MSTRG.6190 Avicennia marina HOM05D005585 ORTHO05D006905 7.2e-65 251.9 342 41.5
Prupe.5G234900 Prunus persica HOM05D005585 ORTHO05D006905 9.4e-65 251.5 342 42.4
TWI60G0738 Tripterygium wilfordii HOM05D005585 ORTHO05D006905 9.4e-65 251.5 351 41.6
A05p31890 Brassica napus HOM05D005585 ORTHO05D006905 1.2e-64 251.1 337 42.1
BraA05t22021Z Brassica rapa HOM05D005585 ORTHO05D006905 1.2e-64 251.1 337 42.1
Thhalv10021015m.g Eutrema salsugineum HOM05D005585 ORTHO05D006905 1.2e-64 251.1 339 42.2
FAN08G0665 Fragaria x ananassa HOM05D005585 ORTHO05D006905 1.2e-64 251.1 320 42.8
Manes.06G004600 Manihot esculenta HOM05D005585 ORTHO05D006905 1.2e-64 251.1 358 40.5
Sp3g16030 Schrenkiella parvula HOM05D005585 ORTHO05D006905 1.2e-64 251.1 336 41.7
MD06G1228400 Malus domestica HOM05D005585 ORTHO05D006905 2.7e-64 250.0 306 47.1
Thecc.03G059000 Theobroma cacao HOM05D005585 ORTHO05D006905 2.7e-64 250.0 324 42.3
BcaC05g28739 Brassica carinata HOM05D005585 ORTHO05D006905 3.6e-64 249.6 315 42.9
C05p48400 Brassica napus HOM05D005585 ORTHO05D006905 3.6e-64 249.6 319 43.3
BolC5t33576H Brassica oleracea HOM05D005585 ORTHO05D006905 3.6e-64 249.6 315 42.9
THA.LOC104821828 Tarenaya hassleriana HOM05D005585 ORTHO05D006905 3.6e-64 249.6 323 42.4
Aa31LG8G4780 Aethionema arabicum HOM05D005585 ORTHO05D006905 4.7e-64 249.2 334 42.2
PGSC0003DMG400005757 Solanum tuberosum HOM05D005585 ORTHO05D006905 4.7e-64 249.2 343 42.6
SalBow7G1179 Salvia bowleyana HOM05D005585 ORTHO05D006905 6.1e-64 248.8 326 43.9
RcHm_v2.0_Chr7g0178161 Rosa chinensis HOM05D005585 ORTHO05D006905 8.0e-64 248.4 346 41.6
Sed0009200 Sechium edule HOM05D005585 ORTHO05D006905 8.0e-64 248.4 289 43.9
Carub.0003s1764 Capsella rubella HOM05D005585 ORTHO05D006905 1.0e-63 248.1 291 45.0
HPP92_019169 Vanilla planifolia HOM05D005585 ORTHO05D006905 1.0e-63 248.1 329 41.6
Dinv20235 Davidia involucrata HOM05D005585 ORTHO05D006905 1.8e-63 247.3 336 41.4
Os03g0200700 Oryza sativa ssp. japonica HOM05D005585 ORTHO05D006905 1.8e-63 247.3 300 44.0
AUR62001019 Chenopodium quinoa HOM05D005585 ORTHO05D006905 2.3e-63 246.9 300 45.7
Gohir.A09G175000 Gossypium hirsutum HOM05D005585 ORTHO05D006905 2.3e-63 246.9 315 41.9
ATR1153G069 Amborella trichopoda HOM05D005585 ORTHO05D006905 4.0e-63 246.1 346 41.0
AL3G31080 Arabidopsis lyrata HOM05D005585 ORTHO05D006905 4.0e-63 246.1 295 44.4
Aqoxy5G00867 Aquilegia oxysepala HOM05D005585 ORTHO05D006905 5.2e-63 245.7 316 43.7
BcaB04g20808 Brassica carinata HOM05D005585 ORTHO05D006905 5.2e-63 245.7 344 40.7
CSS0043300 Camellia sinensis var. sinensis HOM05D005585 ORTHO05D006905 6.7e-63 245.4 305 42.0
Lsat_1_v5_gn_8_83620 Lactuca sativa HOM05D005585 ORTHO05D006905 8.8e-63 245.0 303 42.6
CARHR093240 Cardamine hirsuta HOM05D005585 ORTHO05D006905 1.5e-62 244.2 342 41.5
MELO3C002139.2 Cucumis melo HOM05D005585 ORTHO05D006905 1.5e-62 244.2 306 42.8
HanXRQChr06g0178071 Helianthus annuus HOM05D005585 ORTHO05D006905 1.5e-62 244.2 301 43.9
AT3G17910 Arabidopsis thaliana HOM05D005585 ORTHO05D006905 3.3e-62 243.0 296 43.9
BraA01t03712Z Brassica rapa HOM05D005585 ORTHO05D006905 4.4e-62 242.7 338 41.1
Migut.I00267 Erythranthe guttata HOM05D005585 ORTHO05D006905 4.4e-62 242.7 332 42.5
Potri.012G045200 Populus trichocarpa HOM05D005585 ORTHO05D006905 4.4e-62 242.7 357 41.5
PGR044G1909 Punica granatum HOM05D005585 ORTHO05D006905 5.7e-62 242.3 362 39.2
A01p36480 Brassica napus HOM05D005585 ORTHO05D006905 9.7e-62 241.5 335 40.3
C01p46240 Brassica napus HOM05D005585 ORTHO05D006905 9.7e-62 241.5 315 41.3
BolC1t04585H Brassica oleracea HOM05D005585 ORTHO05D006905 9.7e-62 241.5 315 41.3
Lalb_Chr22g0353511 Lupinus albus HOM05D005585 ORTHO05D006905 1.3e-61 241.1 343 39.1
BcaC09g48755 Brassica carinata HOM05D005585 ORTHO05D006905 1.7e-61 240.7 313 40.6
QL10p030702 Quercus lobata HOM05D005585 ORTHO05D006905 2.2e-61 240.4 295 42.4
Nitab4.5_0001264g0050 Nicotiana tabacum HOM05D005585 ORTHO05D006905 3.7e-61 239.6 323 42.7
GSVIVG01008457001 Vitis vinifera HOM05D005585 ORTHO05D006905 4.8e-61 239.2 312 42.0
Duzib068G1453 Durio zibethinus HOM05D005585 ORTHO05D006905 1.1e-60 238.0 356 40.7
Cc04_g06090 Coffea canephora HOM05D005585 ORTHO05D006905 1.8e-60 237.3 320 40.6
CsaV3_1G007220 Cucumis sativus L. HOM05D005585 ORTHO05D006905 1.8e-60 237.3 306 41.5
Sc12g0007980 Simmondsia chinensis HOM05D005585 ORTHO05D006905 2.4e-60 236.9 271 43.9
Gorai.006G191400 Gossypium raimondii HOM05D005585 ORTHO05D006905 3.1e-60 236.5 315 41.6
CiPaw.15G144600 Carya illinoinensis HOM05D005585 ORTHO05D006905 4.1e-60 236.1 323 39.6
Hma1.2p1_0163F.1_g072970 Hydrangea macrophylla HOM05D005585 ORTHO05D006905 4.1e-60 236.1 332 41.0
COL.COLO4_28892 Corchorus olitorius HOM05D005585 ORTHO05D006905 9.1e-60 235.0 304 42.1
CANSAT80G2587 Cannabis sativa HOM05D005585 ORTHO05D006905 2.7e-59 233.4 329 38.9
ECA236G2254 Erigeron canadensis HOM05D005585 ORTHO05D006905 3.5e-59 233.0 341 40.8
MD14G1237600 Malus domestica HOM05D005585 ORTHO05D006905 3.5e-59 233.0 311 43.1
Phvul.004G149700 Phaseolus vulgaris HOM05D005585 ORTHO05D006905 3.5e-59 233.0 326 39.9
Solyc03g118610.4 Solanum lycopersicum HOM05D005585 ORTHO05D006905 4.5e-59 232.6 341 40.2
arahy.Tifrunner.gnm1.ann1.8TLB5V Arachis hypogaea HOM05D005585 ORTHO05D006905 5.9e-59 232.3 303 39.9
Lalb_Chr14g0370621 Lupinus albus HOM05D005585 ORTHO05D006905 5.9e-59 232.3 352 37.2
Medtr6g069850 Medicago truncatula HOM05D005585 ORTHO05D006905 5.9e-59 232.3 340 38.5
CANSAT80G1087 Cannabis sativa HOM05D005585 ORTHO05D006905 1.0e-58 231.5 331 39.3
Haze_18886 Corylus avellana HOM05D005585 ORTHO05D006905 1.0e-58 231.5 342 39.2
Sopen03g037560 Solanum pennellii HOM05D005585 ORTHO05D006905 1.7e-58 230.7 339 40.1
Eucgr.B00886 Eucalyptus grandis HOM05D005585 ORTHO05D006905 3.8e-58 229.6 312 41.3
FAN04G2668 Fragaria x ananassa HOM05D005585 ORTHO05D006905 5.0e-58 229.2 299 42.5
Ca_25346_v3 Cicer arietinum L. HOM05D005585 ORTHO05D006905 8.5e-58 228.4 333 39.0
ClCG04G010560 Citrullus lanatus HOM05D005585 ORTHO05D006905 8.5e-58 228.4 337 39.2
Ciclev10015784m.g Citrus clementina HOM05D005585 ORTHO05D006905 1.5e-57 227.6 304 41.1
Glyma.07G103200 Glycine max HOM05D005585 ORTHO05D006905 1.5e-57 227.6 338 39.3
Lj2g0015776 Lotus japonicus HOM05D005585 ORTHO05D006905 1.9e-57 227.3 342 37.1
CDE04G0750 Ceratophyllum demersum HOM05D001130 ORTHO05D006905 2.5e-57 226.9 355 38.3
FAN18G2151 Fragaria x ananassa HOM05D005585 ORTHO05D006905 2.5e-57 226.9 299 41.8
Psat1g030240 Pisum sativum HOM05D005585 ORTHO05D006905 3.2e-57 226.5 329 38.6
DCAR_003540 Daucus carota HOM05D005585 ORTHO05D006905 5.5e-57 225.7 345 38.0
Oeu026263.1 Olea europaea HOM05D005585 ORTHO05D006905 1.2e-56 224.6 307 39.7
TPR.G8624 Trifolium pratense HOM05D005585 ORTHO05D006905 2.1e-56 223.8 354 37.3
Rhsim08G0150200 Rhododendron simsii HOM05D005585 ORTHO05D006905 6.1e-56 222.2 309 41.1
Aqoxy5G00865 Aquilegia oxysepala HOM05D005585 ORTHO05D006905 4.0e-55 219.5 271 44.6
EL10Ac4g09125 Beta vulgaris HOM05D005585 ORTHO05D006905 4.4e-54 216.1 306 41.5
Peaxi162Scf00314g00335 Petunia axillaris HOM05D005585 ORTHO05D006905 5.7e-54 215.7 272 43.4
TAR628G1367 Trochodendron aralioides HOM05D005585 ORTHO05D006905 5.7e-54 215.7 233 46.4
unitig_27.g25108 Utricularia gibba HOM05D005585 ORTHO05D006905 2.4e-52 210.3 332 37.3
Lj5C159G17 Lonicera japonica HOM05D005585 ORTHO05D006905 1.6e-51 207.6 251 45.0
Nitab4.5_0010397g0010 Nicotiana tabacum HOM05D005585 ORTHO05D006905 1.6e-51 207.6 278 40.3
Zm00001eb007820 Zea mays HOM05D005585 ORTHO05D006905 3.5e-51 206.5 264 41.3
arahy.Tifrunner.gnm1.ann1.E1YKD2 Arachis hypogaea HOM05D005585 ORTHO05D006905 1.0e-50 204.9 279 39.1
vmacro08951 Vaccinium macrocarpon HOM05D005585 ORTHO05D006905 1.3e-50 204.5 388 34.3
Sabra12G0031400 Salix brachista HOM05D005585 ORTHO05D006905 6.5e-50 202.2 314 37.6
VMungo0464G1491 Vigna mungo HOM05D005585 ORTHO05D006905 1.6e-48 197.6 248 43.1
AagrBONN_evm.TU.Sc2ySwM_340.176 Anthoceros agrestis HOM05D005585 ORTHO05D006905 6.1e-48 195.7 268 41.4
Glyma.09G174400 Glycine max HOM05D005585 ORTHO05D006905 1.8e-47 194.1 268 38.8
CBR_g50834 Chara braunii HOM05D002601 ORTHO05D002884 8.9e-47 191.8 375 33.6
Ah.06g192310 Amaranthus hybridus HOM05D005585 ORTHO05D008527 2.6e-46 190.3 253 41.9
AUR62004935 Chenopodium quinoa HOM05D005585 ORTHO05D006905 8.3e-45 185.3 221 45.7
Hma1.2p1_0163F.1_g072980 Hydrangea macrophylla HOM05D005585 ORTHO05D006905 2.4e-44 183.7 238 42.0
CAN.G843.48 Capsicum annuum HOM05D005585 ORTHO05D006905 1.2e-43 181.4 292 37.0
Cpa.g.c34889 Carica papaya HOM05D005585 ORTHO05D006905 1.2e-40 171.4 220 42.3
PRCOL_00002102 Prasinoderma coloniale HOM05D005585 ORTHO05D006905 3.6e-40 169.9 329 32.8
Eucgr.B00986 Eucalyptus grandis HOM05D005585 ORTHO05D006905 2.9e-37 160.2 207 43.5
CARHR038140 Cardamine hirsuta HOM05D005585 ORTHO05D006905 3.9e-34 149.8 329 31.0
QL12p007232 Quercus lobata HOM05D005585 ORTHO05D006905 5.6e-33 146.0 413 26.9
AL1G55160 Arabidopsis lyrata HOM05D005585 ORTHO05D006905 7.3e-33 145.6 325 32.0
Gohir.D09G170128 Gossypium hirsutum HOM05D005585 ORTHO05D006905 2.1e-32 144.1 176 43.2
Thhalv10011732m.g Eutrema salsugineum HOM05D005585 ORTHO05D006905 2.6e-30 137.1 249 30.9
SEGI_34948 Sequoiadendron giganteum HOM05D005585 ORTHO05D006905 5.8e-30 136.0 164 43.9
SGA_v2.0_scaffold58G20371 Striga asiatica HOM05D005585 ORTHO05D006905 2.9e-29 133.7 202 39.1
AT1G48510 Arabidopsis thaliana HOM05D005585 ORTHO05D006905 1.0e-26 125.2 325 28.3
Cpa.g.sc3.377 Carica papaya HOM05D005585 ORTHO05D006905 1.7e-26 124.4 315 30.8
SEGI_19570 Sequoiadendron giganteum HOM05D005585 ORTHO05D006905 3.0e-26 123.6 137 48.2
BcaB04g20806 Brassica carinata HOM05D005585 ORTHO05D006905 2.1e-24 117.5 178 38.2
CBR_g629 Chara braunii HOM05D005585 ORTHO05D006905 2.0e-22 110.9 199 34.2
Carub.0001s3764 Capsella rubella HOM05D005585 ORTHO05D006905 1.7e-21 107.8 211 30.8
Carub.0001s3763 Capsella rubella HOM05D005585 ORTHO05D006905 6.4e-21 105.9 307 29.3
Cre16.g664700 Chlamydomonas reinhardtii HOM05D005585 ORTHO05D006905 3.2e-20 103.6 357 26.9
FAN13G1174 Fragaria x ananassa HOM05D005585 ORTHO05D006905 5.4e-20 102.8 149 41.6
TAR628G1286 Trochodendron aralioides HOM05D005585 ORTHO05D006905 5.4e-20 102.8 118 43.2
Zm00001eb338430 Zea mays HOM05D005585 ORTHO05D006905 1.3e-18 98.2 96 45.8
Zm00001eb099110 Zea mays HOM05D005585 ORTHO05D006905 7.3e-17 92.4 117 40.2
BcaB08g34867 Brassica carinata HOM05D005585 ORTHO05D006905 1.6e-16 91.3 227 25.6
Gohir.D09G170071 Gossypium hirsutum HOM05D005585 ORTHO05D006905 2.1e-16 90.9 155 34.8
Cfa024306 Carpinus fangiana HOM05D005585 ORTHO05D006905 1.9e-12 77.8 283 24.4


User provided reference genes

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