Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c5_3160 Physcomitrium patens HOM05D003855 ORTHO05D004722 0.0e+00 2152.1 1082 100.0
Mapoly0138s0034 Marchantia polymorpha HOM05D003855 ORTHO05D004722 0.0e+00 1550.8 1009 75.0
CSS0001000 Camellia sinensis var. sinensis HOM05D003855 ORTHO05D004722 0.0e+00 1497.6 1016 71.2
Dinv42141 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1494.6 1017 70.9
Aqoxy6G01362 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 0.0e+00 1491.1 1007 71.3
Peaxi162Scf00016g01731 Petunia axillaris HOM05D003855 ORTHO05D004722 0.0e+00 1487.6 1070 68.5
MBI06_g04502_MAGBIO Magnolia biondii HOM05D003855 ORTHO05D004722 0.0e+00 1484.9 1049 68.4
ATR0100G044 Amborella trichopoda HOM05D003855 ORTHO05D004722 0.0e+00 1483.8 1033 69.5
PSO675G1899 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1481.5 1005 70.9
MSTRG.16753 Avicennia marina HOM05D003855 ORTHO05D004722 0.0e+00 1480.7 1015 70.9
Cfa005469 Carpinus fangiana HOM05D003855 ORTHO05D004722 0.0e+00 1479.5 1014 70.9
PSO541G0814 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1474.9 1001 70.8
TAR381G1366 Trochodendron aralioides HOM05D003855 ORTHO05D004722 0.0e+00 1474.1 1017 70.1
Eucgr.G01465 Eucalyptus grandis HOM05D003855 ORTHO05D004722 0.0e+00 1473.0 1005 71.1
Nn5g30224 Nelumbo nucifera HOM05D003855 ORTHO05D004722 0.0e+00 1471.4 1017 69.6
Sopen01g050820 Solanum pennellii HOM05D003855 ORTHO05D004722 0.0e+00 1471.4 1014 70.4
PGSC0003DMG400025820 Solanum tuberosum HOM05D003855 ORTHO05D004722 0.0e+00 1471.4 1014 70.3
Solyc01g108600.3 Solanum lycopersicum HOM05D003855 ORTHO05D004722 0.0e+00 1468.8 1014 70.3
Cpa.g.sc62.29 Carica papaya HOM05D003855 ORTHO05D004722 0.0e+00 1468.4 1006 70.3
Oeu007277.1 Olea europaea HOM05D003855 ORTHO05D004722 0.0e+00 1467.6 1053 68.1
Dinv23608 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1466.8 1014 69.5
Manes.10G066200 Manihot esculenta HOM05D003855 ORTHO05D004722 0.0e+00 1466.8 1056 68.3
Migut.B00330 Erythranthe guttata HOM05D003855 ORTHO05D004722 0.0e+00 1466.4 1015 69.4
Gohir.A04G120800 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1465.7 1005 70.4
Gorai.012G150300 Gossypium raimondii HOM05D003855 ORTHO05D004722 0.0e+00 1464.9 1005 70.4
Prupe.8G122100 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1464.1 1013 70.1
FvH4_2g06380 Fragaria vesca HOM05D003855 ORTHO05D004722 0.0e+00 1463.7 1060 68.3
Gohir.D04G162300 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1463.7 1005 70.4
Thecc.02G098600 Theobroma cacao HOM05D003855 ORTHO05D004722 0.0e+00 1462.6 1004 70.4
MELO3C018441.2 Cucumis melo HOM05D003855 ORTHO05D004722 0.0e+00 1460.3 1007 70.2
Ciclev10027722m.g Citrus clementina HOM05D003855 ORTHO05D004722 0.0e+00 1459.9 1062 68.2
PGR042G3302 Punica granatum HOM05D003855 ORTHO05D004722 0.0e+00 1458.4 1006 70.9
DCAR_029027 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1457.6 1027 68.3
SalBow6G4323 Salvia bowleyana HOM05D003855 ORTHO05D004722 0.0e+00 1457.6 1004 69.7
CiPaw.05G052400 Carya illinoinensis HOM05D003855 ORTHO05D004722 0.0e+00 1456.8 1061 67.8
CsaV3_7G008690 Cucumis sativus L. HOM05D003855 ORTHO05D004722 0.0e+00 1456.8 1007 70.1
QL11p036227 Quercus lobata HOM05D003855 ORTHO05D004722 0.0e+00 1456.0 1098 66.8
Nitab4.5_0001899g0100 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1455.7 1051 68.1
COL.COLO4_32675 Corchorus olitorius HOM05D003855 ORTHO05D004722 0.0e+00 1454.5 1008 69.4
GSVIVG01031766001 Vitis vinifera HOM05D003855 ORTHO05D004722 0.0e+00 1453.7 1024 69.4
Potri.004G142300 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1452.6 1002 70.5
HanXRQChr10g0301751 Helianthus annuus HOM05D003855 ORTHO05D004722 0.0e+00 1451.8 991 70.0
RcHm_v2.0_Chr6g0258261 Rosa chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1451.8 1005 70.1
ECA234G3461 Erigeron canadensis HOM05D003855 ORTHO05D004722 0.0e+00 1451.0 1003 69.6
Duzib052G0714 Durio zibethinus HOM05D003855 ORTHO05D004722 0.0e+00 1449.9 1005 69.8
Lj1g0003010 Lotus japonicus HOM05D003855 ORTHO05D004722 0.0e+00 1449.5 1003 69.9
TWI79G1596 Tripterygium wilfordii HOM05D003855 ORTHO05D004722 0.0e+00 1449.5 1006 70.1
Phvul.002G054400 Phaseolus vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1449.1 1009 69.3
Cc02_g18640 Coffea canephora HOM05D003855 ORTHO05D004722 0.0e+00 1448.0 1057 66.8
CDE10G0143 Ceratophyllum demersum HOM05D003855 ORTHO05D004722 0.0e+00 1447.6 1015 69.2
VMungo1215G1975 Vigna mungo HOM05D003855 ORTHO05D004722 0.0e+00 1444.5 1010 69.4
BcaB04g19030 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1443.3 1050 67.6
AL3G32540 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1442.2 1056 67.0
Carub.0003s1899 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1441.8 1050 67.0
Ca_24336_v3 Cicer arietinum L. HOM05D003855 ORTHO05D004722 0.0e+00 1440.6 1009 68.5
Sed0020763 Sechium edule HOM05D003855 ORTHO05D004722 0.0e+00 1440.2 1059 67.0
Carub.0001s3883 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1439.9 1048 67.0
THA.LOC104818544 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1439.1 1022 68.3
Zm00001eb255690 Zea mays HOM05D003855 ORTHO05D004722 0.0e+00 1439.1 1019 68.9
Thhalv10019955m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1438.7 1050 67.2
Glyma.01G244900 Glycine max HOM05D003855 ORTHO05D004722 0.0e+00 1438.7 1040 67.1
Potri.009G103700 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1438.7 1002 70.0
AT3G19170 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1438.3 1056 66.8
FAN15G0137 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1436.4 1108 65.3
Sc08g0000010 Simmondsia chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1434.9 1002 68.8
BcaC01g03642 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1434.5 1050 67.1
Medtr5g004680 Medicago truncatula HOM05D003855 ORTHO05D004722 0.0e+00 1433.3 1051 66.3
Sabra04G0094100 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1433.3 1039 68.2
Lalb_Chr16g0376231 Lupinus albus HOM05D003855 ORTHO05D004722 0.0e+00 1432.9 1004 68.9
A03p41100 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1432.5 1050 67.4
BraA03t13267Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1432.5 1050 67.4
SGA_v2.0_scaffold32G13071 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1431.8 1027 67.5
Sabra09G0079400 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1431.4 1005 69.0
Hund00328 Selenicereus undatus HOM05D003855 ORTHO05D004722 0.0e+00 1431.4 1018 68.2
BolC3t17311H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1431.0 1050 67.2
CARHR094570 Cardamine hirsuta HOM05D003855 ORTHO05D004722 0.0e+00 1429.5 1059 66.4
Sp3g17240 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1429.5 1050 67.0
BraA01t03617Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1428.3 1065 65.9
FAN27G3432 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1428.3 1009 69.5
C03p50190 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1427.2 1050 67.0
Nitab4.5_0002097g0080 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1426.8 1051 67.3
AT1G49630 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1425.6 1045 66.9
Psat4g213560 Pisum sativum HOM05D003855 ORTHO05D004722 0.0e+00 1424.8 985 68.7
SMO169G0211 Selaginella moellendorffii HOM05D003855 ORTHO05D004722 0.0e+00 1423.7 957 72.1
A01p35360 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1421.4 1050 66.5
Thhalv10011199m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1421.0 1048 66.4
arahy.Tifrunner.gnm1.ann1.7G1ZKD Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1419.8 1032 67.6
BcaB07g33638 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1419.4 1053 66.4
C01p44870 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1416.0 1077 65.4
FAN20G0084 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1415.2 1108 64.1
Sp1g36500 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1414.1 997 68.3
AL1G57020 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1412.1 1067 65.5
C06p04590 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1411.0 1022 67.1
Aa31LG8G5960 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1409.8 1030 67.5
A06p03570 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1409.8 1022 67.1
BcaC08g43166 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1408.7 1017 67.3
Lsat_1_v5_gn_5_112961 Lactuca sativa HOM05D003855 ORTHO05D004722 0.0e+00 1406.0 985 68.6
BolC6t35586H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1402.9 1023 66.9
BraA06t23565Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1401.7 979 69.1
Aa31LG10G4390 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1401.3 1002 68.2
THA.LOC104801598 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1399.4 1002 67.5
BolC1t04455H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1395.6 1127 62.5
AUR62011441 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1392.9 1033 66.6
EL10Ac9g21832 Beta vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1390.2 994 67.7
Rhsim11G0167000 Rhododendron simsii HOM05D003855 ORTHO05D004722 0.0e+00 1386.7 1142 61.6
vmacro02191 Vaccinium macrocarpon HOM05D003855 ORTHO05D004722 0.0e+00 1386.3 1114 63.1
Ah.01g020190 Amaranthus hybridus HOM05D003855 ORTHO05D004722 0.0e+00 1384.4 1044 66.0
CBR_g17894 Chara braunii HOM05D003855 ORTHO05D004722 0.0e+00 1368.6 1006 67.5
AUR62016621 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1344.7 968 68.0
DCAR_001621 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1339.3 1011 64.0
TPR.G21611 Trifolium pratense HOM05D003855 ORTHO05D004722 0.0e+00 1279.6 914 67.5
Lj5A208T47 Lonicera japonica HOM05D003855 ORTHO05D004722 0.0e+00 1272.7 869 70.3
MD10G1092200 Malus domestica HOM05D003855 ORTHO05D004722 0.0e+00 1271.9 954 65.9
ClCG02G005810 Citrullus lanatus HOM05D003855 ORTHO05D004722 0.0e+00 1271.1 1035 61.9
SGA_v2.0_scaffold90G27671 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1268.4 924 66.7
MCO05G354 Micromonas commoda HOM05D003855 ORTHO05D004722 0.0e+00 1171.8 1007 57.1
Cre01.g020918 Chlamydomonas reinhardtii HOM05D003855 ORTHO05D004722 0.0e+00 1162.9 1036 58.0
PRCOL_00004407 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 0.0e+00 1138.3 982 58.4
arahy.Tifrunner.gnm1.ann1.920WM2 Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1134.8 801 68.2
Haze_01842 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1134.0 1039 57.5
Haze_01847 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1132.5 1039 57.5
HPP92_005967 Vanilla planifolia HOM05D003855 ORTHO05D004722 1.2e-307 1060.1 763 67.0
Prupe.8G122200 Prunus persica HOM05D003855 ORTHO05D004722 3.9e-295 1018.5 1003 51.6
CAN.G1041.7 Capsicum annuum HOM05D003855 ORTHO05D004722 3.1e-292 1008.8 747 66.5
Mapoly0813s0001 Marchantia polymorpha HOM05D003855 ORTHO05D004722 2.0e-291 1006.1 777 65.9
MD11G1150900 Malus domestica HOM05D003855 ORTHO05D004722 4.2e-289 998.4 671 71.8
CARHR039670 Cardamine hirsuta HOM05D003855 ORTHO05D004722 5.8e-283 978.0 722 66.6
CBR_g29853 Chara braunii HOM05D003855 ORTHO05D004722 2.7e-256 889.4 983 47.8
DCAR_001622 Daucus carota HOM05D003855 ORTHO05D004722 7.9e-256 887.9 738 59.2
unitig_21.g20751 Utricularia gibba HOM05D003855 ORTHO05D004722 2.4e-244 849.7 818 55.4
Mapoly0138s0037 Marchantia polymorpha HOM05D003855 ORTHO05D004722 8.3e-237 824.7 671 63.3
MD05G1078000 Malus domestica HOM05D003855 ORTHO05D004722 2.0e-235 820.1 881 49.0
SHI05876 Sapria himalayana HOM05D003855 ORTHO05D004722 5.5e-233 812.0 576 66.8
Actinidia00451 Actinidia chinensis HOM05D003855 ORTHO05D004722 1.4e-220 770.8 596 64.1
ECA238G1787 Erigeron canadensis HOM05D003855 ORTHO05D004722 1.6e-176 624.4 645 51.3
HanXRQChr07g0196921 Helianthus annuus HOM05D003855 ORTHO05D004722 6.2e-176 622.5 625 52.2
Actinidia00452 Actinidia chinensis HOM05D003855 ORTHO05D004722 5.3e-175 619.4 398 74.4
SEGI_28735 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 4.9e-165 586.3 409 70.9
Atru.chr5.2746 Acer truncatum HOM05D003855 ORTHO05D004722 1.3e-152 545.0 347 73.8
Actinidia12962 Actinidia chinensis HOM05D003855 ORTHO05D004722 3.0e-146 523.9 524 53.1
Ciclev10029929m.g Citrus clementina HOM05D003855 ORTHO05D004722 5.7e-145 519.6 481 58.2
Ciclev10030315m.g Citrus clementina HOM05D003855 ORTHO05D004722 2.0e-134 484.6 470 56.4
SHI03491 Sapria himalayana HOM05D000105 ORTHO05D004722 2.2e-133 481.1 405 58.8
Atru.chr5.2745 Acer truncatum HOM05D003855 ORTHO05D004722 1.9e-132 478.0 346 69.1
SEGI_28882 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 5.2e-130 469.9 328 68.0
Lsat_1_v5_gn_2_29981 Lactuca sativa HOM05D003855 ORTHO05D004722 7.0e-127 459.5 395 56.7
HPP92_005974 Vanilla planifolia HOM05D003855 ORTHO05D004722 6.3e-120 436.4 309 67.3
CAN.G1041.6 Capsicum annuum HOM05D003855 ORTHO05D004722 6.5e-117 426.4 330 63.6
PRCOL_00005085 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 6.3e-112 409.8 968 30.2
SHI05877 Sapria himalayana HOM05D003855 ORTHO05D004722 5.4e-111 406.8 393 53.4
MCO14G172 Micromonas commoda HOM05D003855 ORTHO05D004722 2.3e-109 401.4 971 30.0
Cfa026983 Carpinus fangiana HOM05D003855 ORTHO05D004722 1.4e-98 365.5 952 28.0
PRCOL_00005679 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 7.5e-97 359.8 912 30.0
FAN24G2426 Fragaria x ananassa HOM05D003855 ORTHO05D004722 1.5e-92 345.5 262 67.6
Atru.chr5.2744 Acer truncatum HOM05D003855 ORTHO05D004722 4.7e-83 313.9 227 67.8
SEGI_22772 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 6.4e-80 303.5 153 89.5
CBR_g30953 Chara braunii HOM05D003855 ORTHO05D004722 1.3e-56 226.1 882 23.6
Mapoly0138s0035 Marchantia polymorpha HOM05D003855 ORTHO05D004722 3.4e-49 201.4 173 60.7
Aqoxy7G03045 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 3.2e-47 194.9 332 31.9
Os02g0761400 Oryza sativa ssp. japonica HOM05D003855 ORTHO05D004722 1.8e-42 179.1 124 71.0
MD05G1078600 Malus domestica HOM05D003855 ORTHO05D004722 3.4e-41 174.9 222 41.0
MD05G1077700 Malus domestica HOM05D003855 ORTHO05D004722 1.3e-40 172.9 311 36.3
MD05G1077600 Malus domestica HOM05D003855 ORTHO05D004722 1.1e-39 169.9 152 53.9
CBR_g46009 Chara braunii HOM05D003248 ORTHO05D000301 7.2e-39 167.2 464 29.5
MD05G1078400 Malus domestica HOM05D003855 ORTHO05D246709 1.9e-36 159.1 223 44.8
MD05G1078300 Malus domestica HOM05D003855 ORTHO05D249195 4.3e-36 157.9 225 40.9
CBR_g30954 Chara braunii HOM05D003855 ORTHO05D004722 2.4e-34 152.1 162 45.7
SHI03495 Sapria himalayana HOM05D000119 ORTHO05D000054 2.0e-33 149.1 118 61.0
Sc23g0007040 Simmondsia chinensis HOM05D003855 ORTHO05D004722 1.6e-30 139.4 149 49.7
CBR_g53546 Chara braunii HOM05D003855 ORTHO05D000497 2.6e-28 132.1 425 26.1
COL.COLO4_14247 Corchorus olitorius HOM05D003855 ORTHO05D004722 4.1e-26 124.8 135 51.1
CBR_g53548 Chara braunii HOM05D003855 ORTHO05D004722 2.5e-23 115.5 288 28.5
SHI06221 Sapria himalayana HOM05D003855 ORTHO05D000001 4.4e-20 104.8 105 50.5
Lj5A208T46 Lonicera japonica HOM05D003855 ORTHO05D004722 1.1e-18 100.1 89 58.4
MD05G1077900 Malus domestica HOM05D003855 ORTHO05D004722 9.1e-18 97.1 89 52.8
Actinidia12961 Actinidia chinensis HOM05D003855 ORTHO05D004722 3.0e-13 82.0 83 51.8
Lsat_1_v5_gn_9_77040 Lactuca sativa HOM05D003409 ORTHO05D004015 5.9e-09 67.8 43 67.4
MD07G1090800 Malus domestica HOM05D003855 ORTHO05D247201 5.9e-09 67.8 59 57.6
AUR62024613 Chenopodium quinoa HOM05D025040 ORTHO05D138236 3.8e-08 65.1 60 50.0
MD05G1078700 Malus domestica HOM05D003855 ORTHO05D004722 2.5e-07 62.4 79 43.0
VMungo1309G1152 Vigna mungo HOM05D003855 ORTHO05D000575 6.1e-06 57.8 48 50.0


User provided reference genes

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