Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c5_28640 Physcomitrium patens HOM05D005917 ORTHO05D007517 2.0e-297 1025.0 527 100.0
Mapoly0016s0028 Marchantia polymorpha HOM05D005917 ORTHO05D007517 8.2e-182 641.0 540 66.5
SEGI_07273 Sequoiadendron giganteum HOM05D005917 ORTHO05D007517 3.9e-147 525.8 546 56.0
SMO347G0414 Selaginella moellendorffii HOM05D005917 ORTHO05D007517 3.6e-145 519.2 531 55.9
Manes.13G063400 Manihot esculenta HOM05D005917 ORTHO05D007517 2.1e-132 476.9 526 53.2
MBI16_g11554_MAGBIO Magnolia biondii HOM05D005917 ORTHO05D007517 5.1e-131 472.2 530 52.8
TAR624G1058 Trochodendron aralioides HOM05D005917 ORTHO05D007517 1.9e-130 470.3 533 53.7
Gohir.A11G150200 Gossypium hirsutum HOM05D005917 ORTHO05D007517 3.6e-129 466.1 532 52.6
Nn1g08522 Nelumbo nucifera HOM05D005917 ORTHO05D007517 8.1e-129 464.9 530 53.4
Gorai.007G167200 Gossypium raimondii HOM05D005917 ORTHO05D007517 1.2e-127 461.1 532 51.7
PSO700G0235 Papaver somniferum HOM05D005917 ORTHO05D007517 1.2e-127 461.1 536 51.1
Gohir.D11G156700 Gossypium hirsutum HOM05D005917 ORTHO05D007517 2.0e-127 460.3 534 51.9
Hma1.2p1_0405F.1_g145810 Hydrangea macrophylla HOM05D005917 ORTHO05D007517 2.9e-126 456.4 526 53.0
Sabra02G0169500 Salix brachista HOM05D005917 ORTHO05D007517 2.9e-126 456.4 527 51.8
Aqoxy1G02033 Aquilegia oxysepala HOM05D005917 ORTHO05D007517 1.1e-125 454.5 530 51.7
Thecc.01G189700 Theobroma cacao HOM05D005917 ORTHO05D007517 1.1e-125 454.5 532 52.3
Duzib133G0758 Durio zibethinus HOM05D005917 ORTHO05D007517 1.4e-125 454.1 532 51.7
PSO761G0708 Papaver somniferum HOM05D005917 ORTHO05D007517 3.2e-125 453.0 527 51.8
Rhsim06G0173900 Rhododendron simsii HOM05D005917 ORTHO05D007517 3.2e-125 453.0 527 52.2
Potri.002G222100 Populus trichocarpa HOM05D005917 ORTHO05D007517 9.3e-125 451.4 527 51.2
vmacro12107 Vaccinium macrocarpon HOM05D005917 ORTHO05D007517 1.0e-123 448.0 527 51.8
Sc21g0000840 Simmondsia chinensis HOM05D005917 ORTHO05D007517 1.7e-123 447.2 529 52.4
PGR042G1386 Punica granatum HOM05D005917 ORTHO05D007517 3.9e-123 446.0 532 51.9
Sopen07g024410 Solanum pennellii HOM05D005917 ORTHO05D007517 6.6e-123 445.3 540 51.1
Glyma.14G006700 Glycine max HOM05D005917 ORTHO05D007517 3.3e-122 443.0 529 50.9
PGSC0003DMG400006133 Solanum tuberosum HOM05D005917 ORTHO05D007517 3.3e-122 443.0 540 51.1
Lsat_1_v5_gn_7_96161 Lactuca sativa HOM05D005917 ORTHO05D007517 4.3e-122 442.6 528 52.3
TWI36G1171 Tripterygium wilfordii HOM05D005917 ORTHO05D007517 4.3e-122 442.6 530 50.8
CDE02G0007 Ceratophyllum demersum HOM05D005917 ORTHO05D007517 9.6e-122 441.4 514 51.9
Solyc07g047980.3 Solanum lycopersicum HOM05D005917 ORTHO05D007517 1.3e-121 441.0 531 51.4
Cpa.g.sc136.15 Carica papaya HOM05D005917 ORTHO05D007517 1.6e-121 440.7 529 50.7
Cc02_g11180 Coffea canephora HOM05D005917 ORTHO05D007517 3.6e-121 439.5 544 51.7
Ciclev10014942m.g Citrus clementina HOM05D005917 ORTHO05D007517 4.8e-121 439.1 528 52.1
VMungo0647G1382 Vigna mungo HOM05D005917 ORTHO05D007517 4.8e-121 439.1 529 51.6
Glyma.02G306400 Glycine max HOM05D005917 ORTHO05D007517 6.2e-121 438.7 529 50.3
Lj1P791T65 Lonicera japonica HOM05D005917 ORTHO05D007517 6.2e-121 438.7 535 51.6
CAN.G854.3 Capsicum annuum HOM05D005917 ORTHO05D007517 8.1e-121 438.3 536 51.7
COL.COLO4_33026 Corchorus olitorius HOM05D005917 ORTHO05D007517 1.4e-120 437.6 529 51.2
HanXRQChr04g0126661 Helianthus annuus HOM05D005917 ORTHO05D007517 1.4e-120 437.6 533 50.8
Nitab4.5_0005699g0010 Nicotiana tabacum HOM05D005917 ORTHO05D007517 1.4e-120 437.6 537 51.8
MSTRG.14928 Avicennia marina HOM05D005917 ORTHO05D007517 1.8e-120 437.2 537 50.5
Oeu012341.1 Olea europaea HOM05D005917 ORTHO05D007517 1.8e-120 437.2 502 53.4
TPR.G15058 Trifolium pratense HOM05D005917 ORTHO05D007517 1.8e-120 437.2 530 50.9
SalBow2G2149 Salvia bowleyana HOM05D005917 ORTHO05D007517 3.1e-120 436.4 534 50.6
Atru.chr6.3353 Acer truncatum HOM05D005917 ORTHO05D007517 4.0e-120 436.0 529 51.6
Medtr5g097510 Medicago truncatula HOM05D005917 ORTHO05D007517 4.0e-120 436.0 531 51.6
SalBow2G0814 Salvia bowleyana HOM05D005917 ORTHO05D007517 5.3e-120 435.6 540 50.2
HPP92_002885 Vanilla planifolia HOM05D005917 ORTHO05D007517 9.0e-120 434.9 540 50.6
Manes.12G062101 Manihot esculenta HOM05D005917 ORTHO05D007517 1.2e-119 434.5 526 49.8
QL08p028769 Quercus lobata HOM05D005917 ORTHO05D007517 1.2e-119 434.5 533 51.2
HPP92_002896 Vanilla planifolia HOM05D005917 ORTHO05D007517 1.2e-119 434.5 539 50.8
Ah.14g082780 Amaranthus hybridus HOM05D005917 ORTHO05D007517 2.0e-119 433.7 530 50.4
Phvul.008G286200 Phaseolus vulgaris HOM05D005917 ORTHO05D007517 2.6e-119 433.3 529 51.0
CsaV3_7G002690 Cucumis sativus L. HOM05D005917 ORTHO05D007517 9.9e-119 431.4 532 50.2
Peaxi162Scf00776g00033 Petunia axillaris HOM05D005917 ORTHO05D007517 1.3e-118 431.0 530 50.9
SHI10119 Sapria himalayana HOM05D005917 ORTHO05D007517 1.7e-118 430.6 526 50.0
SGA_v2.0_scaffold302G47853 Striga asiatica HOM05D005917 ORTHO05D000086 2.2e-118 430.3 538 50.4
Potri.014G164200 Populus trichocarpa HOM05D005917 ORTHO05D007517 2.9e-118 429.9 542 49.4
TAR626G1403 Trochodendron aralioides HOM05D005917 ORTHO05D007517 2.9e-118 429.9 482 53.7
AUR62017525 Chenopodium quinoa HOM05D005917 ORTHO05D007517 6.4e-118 428.7 532 50.4
Ca_06463_v3 Cicer arietinum L. HOM05D005917 ORTHO05D007517 8.4e-118 428.3 529 50.3
LjContig00081g0012334 Lotus japonicus HOM05D005917 ORTHO05D007517 8.4e-118 428.3 528 49.8
Psat0s736g0080 Pisum sativum HOM05D005917 ORTHO05D007517 8.4e-118 428.3 528 50.2
Sed0016848 Sechium edule HOM05D005917 ORTHO05D007517 1.9e-117 427.2 533 49.2
Cfa014247 Carpinus fangiana HOM05D005917 ORTHO05D007517 4.2e-117 426.0 532 49.1
ClCG02G002680 Citrullus lanatus HOM05D005917 ORTHO05D007517 4.2e-117 426.0 533 50.3
Nitab4.5_0000441g0160 Nicotiana tabacum HOM05D005917 ORTHO05D007517 7.1e-117 425.2 545 49.7
Haze_12696 Corylus avellana HOM05D005917 ORTHO05D007517 1.2e-116 424.5 531 49.5
DCAR_019712 Daucus carota HOM05D005917 ORTHO05D007517 3.5e-116 422.9 531 50.3
TWI18G0259 Tripterygium wilfordii HOM05D005917 ORTHO05D007517 3.5e-116 422.9 531 50.3
EL10Ac9g22738 Beta vulgaris HOM05D005917 ORTHO05D007517 6.0e-116 422.2 530 50.2
CiPaw.04G195700 Carya illinoinensis HOM05D005917 ORTHO05D007517 7.9e-116 421.8 535 49.0
Eucgr.K00656 Eucalyptus grandis HOM05D005917 ORTHO05D007517 1.7e-115 420.6 530 49.6
Lalb_Chr17g0349121 Lupinus albus HOM05D005917 ORTHO05D007517 3.0e-115 419.9 544 48.9
MD09G1121500 Malus domestica HOM05D005917 ORTHO05D007517 3.9e-115 419.5 523 50.7
AUR62015069 Chenopodium quinoa HOM05D005917 ORTHO05D007517 6.6e-115 418.7 477 52.6
Thhalv10022183m.g Eutrema salsugineum HOM05D005917 ORTHO05D007517 6.6e-115 418.7 524 50.4
Aa31LG5G18370 Aethionema arabicum HOM05D005917 ORTHO05D007517 1.1e-114 417.9 537 49.2
Prupe.3G202200 Prunus persica HOM05D005917 ORTHO05D007517 9.6e-114 414.8 529 49.3
THA.LOC104802624 Tarenaya hassleriana HOM05D005917 ORTHO05D007517 9.6e-114 414.8 533 49.2
ECA236G4414 Erigeron canadensis HOM05D005917 ORTHO05D007517 1.6e-113 414.1 539 49.4
MD17G1112500 Malus domestica HOM05D005917 ORTHO05D007517 1.6e-113 414.1 530 49.4
AT3G07790 Arabidopsis thaliana HOM05D005917 ORTHO05D007517 2.8e-113 413.3 530 48.9
arahy.Tifrunner.gnm1.ann1.V8M1HU Arachis hypogaea HOM05D005917 ORTHO05D007517 3.6e-113 412.9 537 48.2
Sp3g06720 Schrenkiella parvula HOM05D005917 ORTHO05D007517 3.6e-113 412.9 533 49.3
CARHR082500 Cardamine hirsuta HOM05D005917 ORTHO05D007517 8.1e-113 411.8 524 49.4
arahy.Tifrunner.gnm1.ann1.410RPC Arachis hypogaea HOM05D005917 ORTHO05D007517 1.4e-112 411.0 537 47.9
AL3G19160 Arabidopsis lyrata HOM05D005917 ORTHO05D007517 2.4e-112 410.2 533 49.3
Migut.M00025 Erythranthe guttata HOM05D005917 ORTHO05D007517 5.3e-112 409.1 533 48.0
C05p59510 Brassica napus HOM05D005917 ORTHO05D007517 6.9e-112 408.7 527 49.5
Carub.0003s0737 Capsella rubella HOM05D005917 ORTHO05D007517 6.9e-112 408.7 531 49.5
A05p40430 Brassica napus HOM05D005917 ORTHO05D007517 2.0e-111 407.1 529 49.9
BraA05t22776Z Brassica rapa HOM05D005917 ORTHO05D007517 2.0e-111 407.1 529 49.9
BolC5t34607H Brassica oleracea HOM05D005917 ORTHO05D007517 2.6e-111 406.8 527 49.1
BcaC09g47947 Brassica carinata HOM05D005917 ORTHO05D007517 2.9e-110 403.3 527 48.2
BolC1t05532H Brassica oleracea HOM05D005917 ORTHO05D007517 3.8e-110 402.9 527 48.0
BraA01t04362Z Brassica rapa HOM05D005917 ORTHO05D007517 1.4e-109 401.0 525 48.8
CBR_g39617 Chara braunii HOM05D005917 ORTHO05D007517 1.4e-109 401.0 578 46.4
unitig_747.g21169 Utricularia gibba HOM05D005917 ORTHO05D007517 1.4e-109 401.0 536 48.1
Os06g0502900 Oryza sativa ssp. japonica HOM05D005917 ORTHO05D007517 3.2e-109 399.8 529 48.0
Dinv07857 Davidia involucrata HOM05D005917 ORTHO05D007517 1.6e-108 397.5 528 49.4
BcaC05g29571 Brassica carinata HOM05D005917 ORTHO05D007517 3.5e-108 396.4 530 48.1
FAN09G3123 Fragaria x ananassa HOM05D005917 ORTHO05D007517 5.6e-106 389.0 526 47.3
FvH4_6g41230 Fragaria vesca HOM05D005917 ORTHO05D007517 1.3e-105 387.9 526 47.3
FAN14G0404 Fragaria x ananassa HOM05D005917 ORTHO05D007517 1.3e-105 387.9 526 47.1
FAN05G4769 Fragaria x ananassa HOM05D005917 ORTHO05D007517 4.8e-105 386.0 533 47.8
FAN02G4512 Fragaria x ananassa HOM05D005917 ORTHO05D007517 6.2e-105 385.6 526 47.7
RcHm_v2.0_Chr2g0156781 Rosa chinensis HOM05D005917 ORTHO05D007517 5.8e-103 379.0 527 46.7
Actinidia09775 Actinidia chinensis HOM05D005917 ORTHO05D007517 3.5e-100 369.8 468 48.5
ATR0665G318 Amborella trichopoda HOM05D005917 ORTHO05D007517 1.3e-99 367.9 528 46.2
CSS0026358 Camellia sinensis var. sinensis HOM05D005917 ORTHO05D007517 1.3e-99 367.9 527 45.9
Zm00001eb209430 Zea mays HOM05D005917 ORTHO05D007517 4.3e-98 362.8 536 45.1
Zm00001eb209420 Zea mays HOM05D005917 ORTHO05D007517 6.2e-97 359.0 536 45.3
Zm00001eb403830 Zea mays HOM05D005917 ORTHO05D007517 1.4e-96 357.8 537 45.3
GSVIVG01030044001 Vitis vinifera HOM05D005917 ORTHO05D000188 2.8e-89 333.6 500 44.6
AagrBONN_evm.TU.Sc2ySwM_344.1277 Anthoceros agrestis HOM05D005917 ORTHO05D007517 5.9e-87 325.9 346 53.8
CDE09G1298 Ceratophyllum demersum HOM05D005917 ORTHO05D007517 1.1e-85 321.6 298 59.7
Manes.12G052600 Manihot esculenta HOM05D005917 ORTHO05D007517 5.3e-72 276.2 517 38.5
Migut.L01336 Erythranthe guttata HOM05D005917 ORTHO05D007517 2.2e-65 254.2 530 39.4
MELO3C024210.2 Cucumis melo HOM05D005917 ORTHO05D007517 1.8e-56 224.6 302 43.4
HanXRQChr11g0328131 Helianthus annuus HOM05D005917 ORTHO05D007517 2.4e-40 171.0 283 38.2
Cre11.g482050 Chlamydomonas reinhardtii HOM05D005917 ORTHO05D007517 9.8e-34 149.1 522 29.3
Sed0013022 Sechium edule HOM05D005917 ORTHO05D007517 2.7e-31 141.0 206 47.1
TPR.G18819 Trifolium pratense HOM05D005917 ORTHO05D007517 8.6e-30 136.0 300 32.3
MCO15G396 Micromonas commoda HOM05D005917 ORTHO05D007517 1.5e-26 125.2 563 27.7
Prupe.3G225800 Prunus persica HOM05D005917 ORTHO05D007517 1.9e-16 91.7 106 49.1
Manes.16G064350 Manihot esculenta HOM05D005917 ORTHO05D007517 1.3e-14 85.5 54 72.2
CAN.G244.10 Capsicum annuum HOM05D000180 ORTHO05D000099 3.9e-14 84.0 79 51.9
PRCOL_00002377 Prasinoderma coloniale HOM05D005917 ORTHO05D333437 8.4e-09 66.2 351 25.4
FAN14G5926 Fragaria x ananassa HOM05D005917 ORTHO05D007517 2.4e-08 64.7 80 43.8
Cfa024500 Carpinus fangiana HOM05D005917 ORTHO05D007517 9.3e-08 62.8 505 22.6
Nn6g32049 Nelumbo nucifera HOM05D005917 ORTHO05D007517 3.9e-06 57.4 62 46.8


User provided reference genes

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