Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c5_2750 Physcomitrium patens HOM05D002799 ORTHO05D008889 5.8e-124 447.6 228 100.0
arahy.Tifrunner.gnm1.ann1.LMI616 Arachis hypogaea HOM05D002799 ORTHO05D008889 1.5e-39 167.2 195 46.7
arahy.Tifrunner.gnm1.ann1.31RF02 Arachis hypogaea HOM05D002799 ORTHO05D008889 4.4e-39 165.6 195 46.2
Eucgr.K03383 Eucalyptus grandis HOM05D002799 ORTHO05D008889 7.5e-39 164.9 196 48.0
arahy.Tifrunner.gnm1.ann1.10QB4Z Arachis hypogaea HOM05D002799 ORTHO05D008889 1.3e-38 164.1 195 46.2
arahy.Tifrunner.gnm1.ann1.B4EAVD Arachis hypogaea HOM05D002799 ORTHO05D008889 1.3e-38 164.1 195 46.2
Ciclev10032834m.g Citrus clementina HOM05D002799 ORTHO05D008889 2.2e-38 163.3 200 47.5
MD07G1305700 Malus domestica HOM05D002799 ORTHO05D008889 2.8e-38 162.9 203 43.8
Gohir.D11G175400 Gossypium hirsutum HOM05D002799 ORTHO05D008889 3.7e-38 162.5 196 45.9
Gorai.007G188000 Gossypium raimondii HOM05D002799 ORTHO05D008889 4.9e-38 162.2 196 45.9
RcHm_v2.0_Chr1g0383841 Rosa chinensis HOM05D002799 ORTHO05D008889 4.9e-38 162.2 199 45.7
ECA236G2689 Erigeron canadensis HOM05D002799 ORTHO05D008889 1.1e-37 161.0 199 46.7
Gohir.A11G169200 Gossypium hirsutum HOM05D002799 ORTHO05D008889 1.8e-37 160.2 196 45.4
Potri.019G048200 Populus trichocarpa HOM05D002799 ORTHO05D008889 1.8e-37 160.2 199 46.2
Sabra19G0057600 Salix brachista HOM05D002799 ORTHO05D008889 1.8e-37 160.2 196 46.9
Manes.08G164500 Manihot esculenta HOM05D002799 ORTHO05D008889 3.1e-37 159.5 196 46.4
FAN10G0267 Fragaria x ananassa HOM05D002799 ORTHO05D007076 4.1e-37 159.1 199 44.2
CSS0012005 Camellia sinensis var. sinensis HOM05D002799 ORTHO05D008889 7.0e-37 158.3 196 44.9
CSS0036576 Camellia sinensis var. sinensis HOM05D002799 ORTHO05D008889 7.0e-37 158.3 196 44.9
FAN03G1078 Fragaria x ananassa HOM05D002799 ORTHO05D007076 7.0e-37 158.3 199 43.7
DCAR_010548 Daucus carota HOM05D002799 ORTHO05D008889 9.1e-37 157.9 193 44.6
GSVIVG01024450001 Vitis vinifera HOM05D002799 ORTHO05D008889 9.1e-37 157.9 198 43.9
FvH4_7g33591 Fragaria vesca HOM05D002799 ORTHO05D008889 1.2e-36 157.5 199 43.2
FAN01G1859 Fragaria x ananassa HOM05D002799 ORTHO05D007076 1.2e-36 157.5 199 43.7
Aa31LG8G14030 Aethionema arabicum HOM05D002799 ORTHO05D008889 1.6e-36 157.1 197 44.2
AagrBONN_evm.TU.Sc2ySwM_362.1504 Anthoceros agrestis HOM05D002799 ORTHO05D008889 1.6e-36 157.1 199 44.7
Prupe.2G323800 Prunus persica HOM05D002799 ORTHO05D008889 1.6e-36 157.1 197 45.2
TWI60G0329 Tripterygium wilfordii HOM05D002799 ORTHO05D008889 1.6e-36 157.1 191 46.6
FvH4_7g33580 Fragaria vesca HOM05D002799 ORTHO05D008889 2.0e-36 156.8 199 43.2
Thecc.04G001600 Theobroma cacao HOM05D002799 ORTHO05D008889 2.0e-36 156.8 199 44.7
Lalb_Chr09g0335071 Lupinus albus HOM05D002799 ORTHO05D008889 2.7e-36 156.4 194 44.3
CiPaw.05G237000 Carya illinoinensis HOM05D002799 ORTHO05D008889 3.5e-36 156.0 194 44.8
QL09p025834 Quercus lobata HOM05D002799 ORTHO05D008889 4.5e-36 155.6 197 44.7
Haze_00591 Corylus avellana HOM05D002799 ORTHO05D008889 5.9e-36 155.2 194 46.4
Medtr8g063470 Medicago truncatula HOM05D002799 ORTHO05D008889 1.0e-35 154.5 194 44.3
AL3G49530 Arabidopsis lyrata HOM05D002799 ORTHO05D008889 1.7e-35 153.7 201 42.3
Nn1g02011 Nelumbo nucifera HOM05D002799 ORTHO05D008889 2.3e-35 153.3 196 43.9
TPR.G670 Trifolium pratense HOM05D002799 ORTHO05D008889 2.3e-35 153.3 197 43.7
ATR0829G224 Amborella trichopoda HOM05D002799 ORTHO05D008889 2.9e-35 152.9 194 43.3
Cc05_g12950 Coffea canephora HOM05D002799 ORTHO05D008889 2.9e-35 152.9 195 45.6
Actinidia08736 Actinidia chinensis HOM05D002799 ORTHO05D008889 3.8e-35 152.5 198 44.4
Sp3g29930 Schrenkiella parvula HOM05D002799 ORTHO05D008889 3.8e-35 152.5 197 41.1
BcaB07g31750 Brassica carinata HOM05D002799 ORTHO05D008889 6.6e-35 151.8 195 42.6
CAN.G1110.21 Capsicum annuum HOM05D002799 ORTHO05D008889 6.6e-35 151.8 195 45.1
TAR629G0193 Trochodendron aralioides HOM05D002799 ORTHO05D008889 8.6e-35 151.4 198 44.9
MSTRG.17884 Avicennia marina HOM05D002799 ORTHO05D008889 1.1e-34 151.0 201 43.3
Dinv29173 Davidia involucrata HOM05D002799 ORTHO05D008889 1.1e-34 151.0 199 44.2
BraA09t36756Z Brassica rapa HOM05D002799 ORTHO05D008889 1.5e-34 150.6 202 40.1
Carub.0003s3061 Capsella rubella HOM05D002799 ORTHO05D008889 1.5e-34 150.6 195 42.1
BcaC04g23004 Brassica carinata HOM05D002799 ORTHO05D008889 1.9e-34 150.2 195 41.0
A09p11140 Brassica napus HOM05D002799 ORTHO05D008889 1.9e-34 150.2 199 40.7
C09p13130 Brassica napus HOM05D002799 ORTHO05D008889 1.9e-34 150.2 195 41.0
CARHR107040 Cardamine hirsuta HOM05D002799 ORTHO05D008889 1.9e-34 150.2 197 41.1
Nitab4.5_0000207g0420 Nicotiana tabacum HOM05D002799 ORTHO05D008889 2.5e-34 149.8 196 44.9
PGSC0003DMG400024993 Solanum tuberosum HOM05D002799 ORTHO05D008889 3.3e-34 149.4 196 44.4
Nitab4.5_0002229g0090 Nicotiana tabacum HOM05D002799 ORTHO05D008889 4.2e-34 149.1 196 44.4
Sopen10g002540 Solanum pennellii HOM05D002799 ORTHO05D008889 4.2e-34 149.1 196 42.3
unitig_746.g26651 Utricularia gibba HOM05D002799 ORTHO05D008889 5.5e-34 148.7 195 43.1
Mapoly0046s0106 Marchantia polymorpha HOM05D002799 ORTHO05D008889 7.2e-34 148.3 203 43.3
Rhsim03G0220500 Rhododendron simsii HOM05D000526 ORTHO05D000956 7.2e-34 148.3 197 42.6
Lsat_1_v5_gn_8_74380 Lactuca sativa HOM05D002799 ORTHO05D008889 1.2e-33 147.5 201 43.3
THA.LOC104803694 Tarenaya hassleriana HOM05D002799 ORTHO05D008889 1.2e-33 147.5 195 41.5
VMungo0251G2787 Vigna mungo HOM05D002799 ORTHO05D008889 1.2e-33 147.5 200 43.5
Glyma.18G134600 Glycine max HOM05D002799 ORTHO05D008889 1.6e-33 147.1 195 42.6
Thhalv10022876m.g Eutrema salsugineum HOM05D002799 ORTHO05D008889 2.1e-33 146.7 189 42.9
AUR62028150 Chenopodium quinoa HOM05D002799 ORTHO05D008889 2.8e-33 146.4 202 43.6
MELO3C005426.2 Cucumis melo HOM05D002799 ORTHO05D008889 3.6e-33 146.0 192 42.2
Phvul.003G054200 Phaseolus vulgaris HOM05D002799 ORTHO05D008889 3.6e-33 146.0 199 43.7
AT2G16790 Arabidopsis thaliana HOM05D002799 ORTHO05D008889 4.7e-33 145.6 197 40.6
CsaV3_5G005340 Cucumis sativus L. HOM05D002799 ORTHO05D008889 8.0e-33 144.8 193 43.5
Atru.chr12.2012 Acer truncatum HOM05D002799 ORTHO05D008889 1.0e-32 144.4 208 41.8
Sed0001745 Sechium edule HOM05D002799 ORTHO05D008889 1.4e-32 144.1 195 43.6
CANSAT21G1155 Cannabis sativa HOM05D002799 ORTHO05D008889 3.0e-32 142.9 190 44.7
Migut.M01834 Erythranthe guttata HOM05D002799 ORTHO05D008889 3.0e-32 142.9 201 41.3
BolC9t54208H Brassica oleracea HOM05D002799 ORTHO05D008889 4.0e-32 142.5 189 40.7
Os06g0114650 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D008889 4.0e-32 142.5 194 42.8
Phvul.003G053900 Phaseolus vulgaris HOM05D002799 ORTHO05D008889 5.2e-32 142.1 199 43.7
EL10Ac3g05099 Beta vulgaris HOM05D002799 ORTHO05D008889 6.8e-32 141.7 199 43.2
Glyma.08G289900 Glycine max HOM05D002799 ORTHO05D008889 1.2e-31 141.0 195 42.1
Lj1P1032T28 Lonicera japonica HOM05D002799 ORTHO05D008889 2.0e-31 140.2 180 46.7
SGA_v2.0_scaffold70G23573 Striga asiatica HOM05D002799 ORTHO05D008889 2.0e-31 140.2 191 41.4
Lsat_1_v5_gn_5_146100 Lactuca sativa HOM05D002799 ORTHO05D008889 3.4e-31 139.4 200 41.5
SMO174G0264 Selaginella moellendorffii HOM05D002799 ORTHO05D008889 3.4e-31 139.4 193 42.0
Ah.04g157280 Amaranthus hybridus HOM05D002799 ORTHO05D008889 4.4e-31 139.0 199 41.7
Lj4g0019925 Lotus japonicus HOM05D002799 ORTHO05D008889 9.8e-31 137.9 186 45.2
PSO675G5486 Papaver somniferum HOM05D002799 ORTHO05D008889 2.9e-30 136.3 217 40.1
PSO717G0064 Papaver somniferum HOM05D002799 ORTHO05D008889 3.7e-30 136.0 217 39.2
Oeu053393.1 Olea europaea HOM05D002799 ORTHO05D008889 2.4e-29 133.3 184 42.4
Nn3g19277 Nelumbo nucifera HOM05D002799 ORTHO05D008889 1.2e-28 131.0 177 43.5
Peaxi162Scf00257g00081 Petunia axillaris HOM05D002799 ORTHO05D008889 1.7e-27 127.1 177 43.5
Solyc10g006600.4 Solanum lycopersicum HOM05D002799 ORTHO05D008889 3.9e-27 125.9 157 44.6
Duzib133G0126 Durio zibethinus HOM05D002799 ORTHO05D008889 6.6e-27 125.2 182 40.7
vmacro06499 Vaccinium macrocarpon HOM05D002799 ORTHO05D008889 3.3e-26 122.9 181 40.9
MD01G1233600 Malus domestica HOM05D002799 ORTHO05D008889 1.6e-25 120.6 95 56.8
PGR004G1571 Punica granatum HOM05D002799 ORTHO05D008889 3.4e-23 112.8 153 43.8
Aqoxy7G00884 Aquilegia oxysepala HOM05D002799 ORTHO05D008889 1.9e-21 107.1 161 42.2
Ca_14681_v3 Cicer arietinum L. HOM05D002799 ORTHO05D008889 1.2e-20 104.4 157 41.4
ClCG01G005050 Citrullus lanatus HOM05D002799 ORTHO05D008889 4.6e-20 102.4 156 40.4
COL.COLO4_19775 Corchorus olitorius HOM05D002799 ORTHO05D008889 7.8e-20 101.7 156 40.4
Psat4g127040 Pisum sativum HOM05D002799 ORTHO05D008889 5.0e-19 99.0 154 40.3
Cre08.g385750 Chlamydomonas reinhardtii HOM05D002799 ORTHO05D008889 1.5e-18 97.4 179 35.2
TPR.G26908 Trifolium pratense HOM05D002799 ORTHO05D008889 1.5e-18 97.4 157 39.5
PRCOL_00003203 Prasinoderma coloniale HOM05D002799 ORTHO05D008889 2.8e-17 93.2 196 36.2
Cfa026682 Carpinus fangiana HOM05D002799 ORTHO05D008889 4.4e-15 85.9 195 34.9
PSO675G4133 Papaver somniferum HOM05D002799 ORTHO05D008889 1.1e-13 81.3 175 33.7
MCO08G110 Micromonas commoda HOM05D002799 ORTHO05D008889 2.4e-13 80.1 176 33.0
Rhsim03G0164800 Rhododendron simsii HOM05D002799 ORTHO05D008889 1.6e-12 77.4 127 37.8
Sc19g0000240 Simmondsia chinensis HOM05D002799 ORTHO05D008889 3.3e-10 69.7 52 59.6
SHI03438 Sapria himalayana HOM05D002799 ORTHO05D008889 5.6e-10 68.9 153 32.7
Ca_28676_v3 Cicer arietinum L. HOM05D002799 ORTHO05D008889 4.7e-09 65.9 174 30.5
HPP92_002455 Vanilla planifolia HOM05D002799 ORTHO05D008889 2.6e-07 60.1 195 26.7
HanXRQChr10g0305151 Helianthus annuus HOM05D002799 ORTHO05D008889 3.4e-07 59.7 48 50.0


User provided reference genes

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