Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c5_26160 Physcomitrium patens HOM05D002539 ORTHO05D002876 2.2e-19 97.8 45 100.0
Pp3c3_34840 Physcomitrium patens HOM05D002539 ORTHO05D002876 2.1e-09 64.7 45 66.7
AagrBONN_evm.TU.Sc2ySwM_344.4657 Anthoceros agrestis HOM05D002539 ORTHO05D002876 6.1e-09 63.2 42 64.3
Ciclev10020794m.g Citrus clementina HOM05D002539 ORTHO05D002876 7.9e-09 62.8 42 61.9
Lj5A335G22 Lonicera japonica HOM05D002539 ORTHO05D002876 7.9e-09 62.8 42 61.9
Atru.chr5.1006 Acer truncatum HOM05D002539 ORTHO05D002876 1.0e-08 62.4 42 59.5
CBR_g18976 Chara braunii HOM05D002539 ORTHO05D002876 1.0e-08 62.4 42 61.9
Migut.C00729 Erythranthe guttata HOM05D002539 ORTHO05D002876 1.0e-08 62.4 42 59.5
Rhsim05G0132200 Rhododendron simsii HOM05D002539 ORTHO05D002876 1.0e-08 62.4 42 59.5
SGA_v2.0_scaffold5G02884 Striga asiatica HOM05D002539 ORTHO05D002876 1.0e-08 62.4 42 59.5
vmacro19791 Vaccinium macrocarpon HOM05D002539 ORTHO05D002876 1.0e-08 62.4 42 59.5
MSTRG.27944 Avicennia marina HOM05D002539 ORTHO05D002876 1.3e-08 62.0 42 59.5
MSTRG.5140 Avicennia marina HOM05D002539 ORTHO05D002876 1.3e-08 62.0 42 59.5
CSS0002968 Camellia sinensis var. sinensis HOM05D002539 ORTHO05D002876 1.3e-08 62.0 42 59.5
Cc02_g34970 Coffea canephora HOM05D002539 ORTHO05D002876 1.3e-08 62.0 42 59.5
COL.COLO4_23237 Corchorus olitorius HOM05D002539 ORTHO05D002876 1.3e-08 62.0 42 59.5
Dinv24436 Davidia involucrata HOM05D002539 ORTHO05D002876 1.3e-08 62.0 42 59.5
Dinv24437 Davidia involucrata HOM05D002539 ORTHO05D002876 1.3e-08 62.0 42 59.5
Gohir.D07G132600 Gossypium hirsutum HOM05D002539 ORTHO05D002876 1.3e-08 62.0 42 59.5
Hma1.2p1_0008F-1.1_g005650 Hydrangea macrophylla HOM05D002539 ORTHO05D002876 1.3e-08 62.0 42 59.5
Oeu037028.1 Olea europaea HOM05D002539 ORTHO05D002876 1.3e-08 62.0 42 59.5
SalBow1G4930 Salvia bowleyana HOM05D002539 ORTHO05D002876 1.3e-08 62.0 42 59.5
SalBow6G4473 Salvia bowleyana HOM05D002539 ORTHO05D002876 1.3e-08 62.0 42 59.5
SEGI_09721 Sequoiadendron giganteum HOM05D002539 ORTHO05D002876 1.3e-08 62.0 42 61.9
SGA_v2.0_scaffold37G14612 Striga asiatica HOM05D002539 ORTHO05D002876 1.3e-08 62.0 42 59.5
Duzib133G1023 Durio zibethinus HOM05D002539 ORTHO05D002876 1.8e-08 61.6 42 59.5
ECA240G0639 Erigeron canadensis HOM05D002539 ORTHO05D002876 1.8e-08 61.6 42 59.5
Gohir.A07G128300 Gossypium hirsutum HOM05D002539 ORTHO05D002876 1.8e-08 61.6 42 59.5
Gorai.001G144000 Gossypium raimondii HOM05D002539 ORTHO05D002876 1.8e-08 61.6 42 59.5
Atru.chr1.3420 Acer truncatum HOM05D002539 ORTHO05D002876 2.3e-08 61.2 42 59.5
Actinidia01512 Actinidia chinensis HOM05D002539 ORTHO05D002876 2.3e-08 61.2 42 57.1
Actinidia12778 Actinidia chinensis HOM05D002539 ORTHO05D002876 2.3e-08 61.2 42 57.1
FvH4_5g39320 Fragaria vesca HOM05D002539 ORTHO05D002876 2.3e-08 61.2 42 61.9
FAN08G2541 Fragaria x ananassa HOM05D002539 ORTHO05D002876 2.3e-08 61.2 42 61.9
FAN13G0855 Fragaria x ananassa HOM05D002539 ORTHO05D002876 2.3e-08 61.2 42 61.9
FAN18G4394 Fragaria x ananassa HOM05D002539 ORTHO05D002876 2.3e-08 61.2 42 61.9
Os10g0183900 Oryza sativa ssp. japonica HOM05D002539 ORTHO05D002876 2.3e-08 61.2 42 57.1
PSO017G3927 Papaver somniferum HOM05D002539 ORTHO05D002876 2.3e-08 61.2 42 57.1
PSO210G3830 Papaver somniferum HOM05D002539 ORTHO05D002876 2.3e-08 61.2 42 57.1
PSO478G5203 Papaver somniferum HOM05D002539 ORTHO05D002876 2.3e-08 61.2 42 57.1
Pp3c12_11540 Physcomitrium patens HOM05D002539 ORTHO05D002876 2.3e-08 61.2 45 62.2
RcHm_v2.0_Chr7g0241601 Rosa chinensis HOM05D002539 ORTHO05D002876 2.3e-08 61.2 42 61.9
Thecc.01G312800 Theobroma cacao HOM05D002539 ORTHO05D002876 2.3e-08 61.2 42 57.1
TWI18G1220 Tripterygium wilfordii HOM05D002539 ORTHO05D002876 2.3e-08 61.2 42 59.5
TWI36G0273 Tripterygium wilfordii HOM05D002539 ORTHO05D002876 2.3e-08 61.2 42 59.5
GSVIVG01028116001 Vitis vinifera HOM05D002539 ORTHO05D002876 2.3e-08 61.2 42 57.1
Zm00001eb233640 Zea mays HOM05D002539 ORTHO05D002876 2.3e-08 61.2 42 57.1
arahy.Tifrunner.gnm1.ann1.E77Y9X Arachis hypogaea HOM05D002539 ORTHO05D002876 3.0e-08 60.8 42 59.5
arahy.Tifrunner.gnm1.ann1.VKDS2Z Arachis hypogaea HOM05D002539 ORTHO05D002876 3.0e-08 60.8 42 59.5
CiPaw.08G089900 Carya illinoinensis HOM05D002539 ORTHO05D002876 3.0e-08 60.8 42 59.5
Lj3g0026518 Lotus japonicus HOM05D002539 ORTHO05D002876 3.0e-08 60.8 42 59.5
MBI18_g31675_MAGBIO Magnolia biondii HOM05D002539 ORTHO05D002876 3.0e-08 60.8 42 57.1
MD11G1314900 Malus domestica HOM05D002539 ORTHO05D002876 3.0e-08 60.8 42 59.5
Medtr3g007750 Medicago truncatula HOM05D002539 ORTHO05D002876 3.0e-08 60.8 42 59.5
Prupe.1G563800 Prunus persica HOM05D002539 ORTHO05D002876 3.0e-08 60.8 42 59.5
Prupe.8G271700 Prunus persica HOM05D002539 ORTHO05D002876 3.0e-08 60.8 42 59.5
Aqoxy3G02771 Aquilegia oxysepala HOM05D002539 ORTHO05D002876 3.9e-08 60.5 42 57.1
Cfa005804 Carpinus fangiana HOM05D002539 ORTHO05D002876 3.9e-08 60.5 42 59.5
Ca_12846_v3 Cicer arietinum L. HOM05D002539 ORTHO05D002876 3.9e-08 60.5 42 59.5
Haze_05036 Corylus avellana HOM05D002539 ORTHO05D002876 3.9e-08 60.5 42 59.5
MELO3C010154.2 Cucumis melo HOM05D002539 ORTHO05D002876 3.9e-08 60.5 42 59.5
CsaV3_1G045270 Cucumis sativus L. HOM05D002539 ORTHO05D002876 3.9e-08 60.5 42 59.5
HanXRQChr03g0083541 Helianthus annuus HOM05D002539 ORTHO05D002876 3.9e-08 60.5 42 57.1
HanXRQChr13g0415261 Helianthus annuus HOM05D002539 ORTHO05D002876 3.9e-08 60.5 42 57.1
Medtr3g467370 Medicago truncatula HOM05D002539 ORTHO05D002876 3.9e-08 60.5 42 59.5
TPR.G28828 Trifolium pratense HOM05D002539 ORTHO05D002876 3.9e-08 60.5 42 59.5
TPR.G35839 Trifolium pratense HOM05D002539 ORTHO05D002876 3.9e-08 60.5 42 59.5
unitig_37.g12524 Utricularia gibba HOM05D002539 ORTHO05D002876 3.9e-08 60.5 42 57.1
CANSAT78G0122 Cannabis sativa HOM05D002539 ORTHO05D002876 5.1e-08 60.1 42 59.5
CDE02G0620 Ceratophyllum demersum HOM05D002539 ORTHO05D002876 5.1e-08 60.1 42 57.1
ClCG06G009680 Citrullus lanatus HOM05D002539 ORTHO05D002876 5.1e-08 60.1 42 59.5
ClCG11G015510 Citrullus lanatus HOM05D002539 ORTHO05D002876 5.1e-08 60.1 42 59.5
Lalb_Chr19g0133121 Lupinus albus HOM05D002539 ORTHO05D002876 5.1e-08 60.1 42 59.5
Manes.01G227400 Manihot esculenta HOM05D002539 ORTHO05D002876 5.1e-08 60.1 42 59.5
Mapoly0016s0053 Marchantia polymorpha HOM05D002539 ORTHO05D002876 5.1e-08 60.1 42 57.1
Nn4g25605 Nelumbo nucifera HOM05D002539 ORTHO05D002876 5.1e-08 60.1 42 57.1
Potri.014G121200 Populus trichocarpa HOM05D002539 ORTHO05D002876 5.1e-08 60.1 42 59.5
PGR119G2169 Punica granatum HOM05D002539 ORTHO05D002876 5.1e-08 60.1 42 57.1
Sabra14G0089800 Salix brachista HOM05D002539 ORTHO05D002876 5.1e-08 60.1 42 59.5
SMO236G0014 Selaginella moellendorffii HOM05D002539 ORTHO05D002876 5.1e-08 60.1 42 61.9
Lsat_1_v5_gn_6_84020 Lactuca sativa HOM05D002539 ORTHO05D002876 6.7e-08 59.7 42 59.5
PSO017G2058 Papaver somniferum HOM05D002539 ORTHO05D002876 6.7e-08 59.7 42 57.1
Eucgr.G01361 Eucalyptus grandis HOM05D002539 ORTHO05D002876 8.7e-08 59.3 42 57.1
Eucgr.H03223 Eucalyptus grandis HOM05D002539 ORTHO05D002876 8.7e-08 59.3 42 57.1
Eucgr.K03428 Eucalyptus grandis HOM05D002539 ORTHO05D002876 8.7e-08 59.3 42 57.1
MD01G1012800 Malus domestica HOM05D002539 ORTHO05D002876 8.7e-08 59.3 45 57.8
CAN.G1715.3 Capsicum annuum HOM05D002539 ORTHO05D002876 1.1e-07 58.9 42 57.1
Nitab4.5_0000368g0120 Nicotiana tabacum HOM05D002539 ORTHO05D002876 1.1e-07 58.9 42 57.1
Nitab4.5_0004873g0050 Nicotiana tabacum HOM05D002539 ORTHO05D002876 1.1e-07 58.9 42 57.1
Peaxi162Scf00673g00327 Petunia axillaris HOM05D002539 ORTHO05D002876 1.1e-07 58.9 42 57.1
Psat1g054320 Pisum sativum HOM05D002539 ORTHO05D002876 1.1e-07 58.9 42 57.1
Solyc01g100430.3 Solanum lycopersicum HOM05D002539 ORTHO05D002876 1.1e-07 58.9 42 57.1
Sopen01g043950 Solanum pennellii HOM05D002539 ORTHO05D002876 1.1e-07 58.9 42 57.1
PGSC0003DMG400002773 Solanum tuberosum HOM05D002539 ORTHO05D002876 1.1e-07 58.9 42 57.1
Cpa.g.sc26.213 Carica papaya HOM05D002539 ORTHO05D002876 1.9e-07 58.2 42 54.8
Haze_26171 Corylus avellana HOM05D002539 ORTHO05D002876 1.9e-07 58.2 45 55.6
Peaxi162Scf00916g00217 Petunia axillaris HOM05D002539 ORTHO05D002876 2.5e-07 57.8 42 54.8
Phvul.003G030300 Phaseolus vulgaris HOM05D002539 ORTHO05D002876 2.5e-07 57.8 42 57.1
Phvul.008G161800 Phaseolus vulgaris HOM05D002539 ORTHO05D002876 2.5e-07 57.8 42 57.1
VMungo0647G1023 Vigna mungo HOM05D002539 ORTHO05D002876 2.5e-07 57.8 42 57.1
VMungo1080G1512 Vigna mungo HOM05D002539 ORTHO05D002876 2.5e-07 57.8 42 57.1
DCAR_003645 Daucus carota HOM05D002539 ORTHO05D002876 3.3e-07 57.4 42 54.8
DCAR_025277 Daucus carota HOM05D002539 ORTHO05D002876 3.3e-07 57.4 42 54.8
Glyma.06G315500 Glycine max HOM05D002539 ORTHO05D002876 4.3e-07 57.0 42 57.1
Glyma.06G316500 Glycine max HOM05D002539 ORTHO05D002876 4.3e-07 57.0 42 57.1
Oeu039501.1 Olea europaea HOM05D002539 ORTHO05D002876 5.7e-07 56.6 42 54.8
ATR0618G264 Amborella trichopoda HOM05D002539 ORTHO05D002876 7.4e-07 56.2 42 57.1
TAR374G1067 Trochodendron aralioides HOM05D002539 ORTHO05D002876 7.4e-07 56.2 42 54.8
MCO14G176 Micromonas commoda HOM05D002539 ORTHO05D002876 2.8e-06 54.3 42 54.8
SHI07194 Sapria himalayana HOM05D002539 ORTHO05D002876 2.8e-06 54.3 43 53.5
THA.LOC104802156 Tarenaya hassleriana HOM05D002539 ORTHO05D002876 3.7e-06 53.9 42 50.0


User provided reference genes

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