Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c5_25680 Physcomitrium patens HOM05D003920 ORTHO05D004877 4.4e-208 727.6 343 100.0
Lj9C630T11 Lonicera japonica HOM05D003920 ORTHO05D004877 6.0e-109 398.3 325 57.2
Aqoxy2G00138 Aquilegia oxysepala HOM05D003920 ORTHO05D004877 2.2e-106 389.8 350 52.6
COL.COLO4_23923 Corchorus olitorius HOM05D003920 ORTHO05D004877 8.2e-106 387.9 333 54.4
Nn2g15431 Nelumbo nucifera HOM05D003920 ORTHO05D004877 1.4e-105 387.1 343 53.4
CDE04G0006 Ceratophyllum demersum HOM05D003920 ORTHO05D004877 5.3e-105 385.2 340 52.4
Nn7g36164 Nelumbo nucifera HOM05D003920 ORTHO05D004877 6.9e-105 384.8 343 54.8
SEGI_34678 Sequoiadendron giganteum HOM05D003920 ORTHO05D004877 1.5e-104 383.6 340 54.4
Ciclev10031666m.g Citrus clementina HOM05D003920 ORTHO05D004877 1.0e-103 380.9 313 55.0
TAR633G1074 Trochodendron aralioides HOM05D003920 ORTHO05D004877 1.0e-103 380.9 332 53.6
Manes.10G144700 Manihot esculenta HOM05D003920 ORTHO05D004877 2.9e-103 379.4 351 51.9
Peaxi162Scf00407g00639 Petunia axillaris HOM05D003920 ORTHO05D004877 5.0e-103 378.6 352 50.9
SMO203G0245 Selaginella moellendorffii HOM05D003920 ORTHO05D004877 5.0e-103 378.6 335 54.0
Zm00001eb381600 Zea mays HOM05D003920 ORTHO05D004877 5.0e-103 378.6 353 53.3
Solyc10g038000.3 Solanum lycopersicum HOM05D003920 ORTHO05D004877 1.1e-102 377.5 353 52.1
CAN.G709.1 Capsicum annuum HOM05D003920 ORTHO05D004877 3.2e-102 375.9 345 52.5
MD02G1313900 Malus domestica HOM05D003920 ORTHO05D004877 3.2e-102 375.9 357 51.5
Ca_27172_v3 Cicer arietinum L. HOM05D003920 ORTHO05D004877 5.5e-102 375.2 348 51.4
FAN06G2354 Fragaria x ananassa HOM05D003920 ORTHO05D004877 5.5e-102 375.2 351 52.1
Sopen10g011530 Solanum pennellii HOM05D003920 ORTHO05D004877 7.2e-102 374.8 353 51.3
FvH4_7g00890 Fragaria vesca HOM05D003920 ORTHO05D004877 9.4e-102 374.4 351 51.9
Peaxi162Scf00428g00618 Petunia axillaris HOM05D003920 ORTHO05D004877 1.2e-101 374.0 351 51.3
HanXRQChr01g0016141 Helianthus annuus HOM05D003920 ORTHO05D004877 4.6e-101 372.1 341 49.9
Prupe.2G011700 Prunus persica HOM05D003920 ORTHO05D004877 4.6e-101 372.1 355 50.4
ATR0605G260 Amborella trichopoda HOM05D003920 ORTHO05D004877 6.1e-101 371.7 347 50.4
Medtr3g028190 Medicago truncatula HOM05D003920 ORTHO05D004877 6.1e-101 371.7 348 50.9
PSO384G3532 Papaver somniferum HOM05D003920 ORTHO05D004877 6.1e-101 371.7 355 49.0
HPP92_005768 Vanilla planifolia HOM05D003920 ORTHO05D004877 6.1e-101 371.7 361 51.2
Dinv43454 Davidia involucrata HOM05D003920 ORTHO05D004877 7.9e-101 371.3 355 50.1
Lj3g0003225 Lotus japonicus HOM05D003920 ORTHO05D004877 1.4e-100 370.5 348 50.3
MD07G1008500 Malus domestica HOM05D003920 ORTHO05D004877 1.4e-100 370.5 353 51.3
Rhsim07G0054700 Rhododendron simsii HOM05D003920 ORTHO05D004877 1.8e-100 370.2 347 50.7
Psat5g204200 Pisum sativum HOM05D003920 ORTHO05D004877 2.3e-100 369.8 347 48.7
Sabra09G0046300 Salix brachista HOM05D003920 ORTHO05D004877 5.1e-100 368.6 348 49.4
VMungo1080G0709 Vigna mungo HOM05D003920 ORTHO05D004877 6.7e-100 368.2 347 49.0
Mapoly0042s0020 Marchantia polymorpha HOM05D003920 ORTHO05D004877 8.8e-100 367.9 401 45.4
PSO339G5616 Papaver somniferum HOM05D003920 ORTHO05D004877 8.8e-100 367.9 355 48.5
BraA08t33064Z Brassica rapa HOM05D003920 ORTHO05D004877 1.1e-99 367.5 340 49.7
ECA248G0446 Erigeron canadensis HOM05D003920 ORTHO05D004877 1.1e-99 367.5 341 51.3
Phvul.005G019900 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 1.1e-99 367.5 347 48.7
DCAR_003208 Daucus carota HOM05D003920 ORTHO05D004877 1.5e-99 367.1 344 52.0
Glyma.08G153800 Glycine max HOM05D003920 ORTHO05D004877 3.3e-99 365.9 347 49.9
Glyma.15G272400 Glycine max HOM05D003920 ORTHO05D004877 3.3e-99 365.9 348 50.0
arahy.Tifrunner.gnm1.ann1.Z50281 Arachis hypogaea HOM05D003920 ORTHO05D004877 4.3e-99 365.5 347 50.1
Gohir.D08G038400 Gossypium hirsutum HOM05D003920 ORTHO05D004877 4.3e-99 365.5 352 48.9
Gorai.004G036900 Gossypium raimondii HOM05D003920 ORTHO05D004877 4.3e-99 365.5 352 48.9
Lalb_Chr01g0015291 Lupinus albus HOM05D003920 ORTHO05D004877 4.3e-99 365.5 349 51.3
Thhalv10010518m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 7.4e-99 364.8 340 50.0
Gohir.A08G027700 Gossypium hirsutum HOM05D003920 ORTHO05D004877 7.4e-99 364.8 346 50.0
Sp1g00020 Schrenkiella parvula HOM05D003920 ORTHO05D004877 1.7e-98 363.6 348 50.9
TWI73G0359 Tripterygium wilfordii HOM05D003920 ORTHO05D004877 1.7e-98 363.6 373 46.1
Potri.001G268200 Populus trichocarpa HOM05D003920 ORTHO05D004877 3.7e-98 362.5 350 50.0
BcaC07g37767 Brassica carinata HOM05D003920 ORTHO05D004877 4.8e-98 362.1 340 49.7
Sabra16G0164300 Salix brachista HOM05D003920 ORTHO05D004877 6.3e-98 361.7 353 49.9
TPR.G12140 Trifolium pratense HOM05D003920 ORTHO05D004877 8.2e-98 361.3 344 49.1
Migut.N01471 Erythranthe guttata HOM05D003920 ORTHO05D004877 1.1e-97 360.9 339 51.0
Gorai.004G173300 Gossypium raimondii HOM05D003920 ORTHO05D004877 1.8e-97 360.1 351 49.9
MBI04_g13623_MAGBIO Magnolia biondii HOM05D003920 ORTHO05D004877 2.4e-97 359.8 348 51.4
Potri.009G062600 Populus trichocarpa HOM05D003920 ORTHO05D004877 2.4e-97 359.8 348 48.3
DCAR_022405 Daucus carota HOM05D003920 ORTHO05D004877 3.1e-97 359.4 347 50.4
arahy.Tifrunner.gnm1.ann1.LBVL0K Arachis hypogaea HOM05D003920 ORTHO05D004877 5.3e-97 358.6 350 49.1
PGR044G2195 Punica granatum HOM05D003920 ORTHO05D004877 6.9e-97 358.2 356 48.6
CARHR291420 Cardamine hirsuta HOM05D003920 ORTHO05D004877 2.0e-96 356.7 340 49.4
Eucgr.J01264 Eucalyptus grandis HOM05D003920 ORTHO05D004877 3.4e-96 355.9 353 48.4
THA.LOC104827426 Tarenaya hassleriana HOM05D003920 ORTHO05D004877 5.9e-96 355.1 340 49.4
TAR369G0176 Trochodendron aralioides HOM05D003920 ORTHO05D004877 1.0e-95 354.4 354 48.3
unitig_85.g27216 Utricularia gibba HOM05D003920 ORTHO05D004877 1.7e-95 353.6 340 49.4
Nitab4.5_0000634g0100 Nicotiana tabacum HOM05D003920 ORTHO05D004877 2.9e-95 352.8 347 47.8
Sed0011667 Sechium edule HOM05D003920 ORTHO05D004877 2.9e-95 352.8 356 47.2
A08p28590 Brassica napus HOM05D003920 ORTHO05D004877 6.5e-95 351.7 337 48.4
MSTRG.5016 Avicennia marina HOM05D003920 ORTHO05D004877 7.2e-94 348.2 337 49.6
AT3G08505 Arabidopsis thaliana HOM05D003920 ORTHO05D004877 7.9e-93 344.7 340 47.6
Sc10g0000010 Simmondsia chinensis HOM05D003920 ORTHO05D004877 1.0e-92 344.4 347 47.6
vmacro13655 Vaccinium macrocarpon HOM05D003920 ORTHO05D004877 1.0e-92 344.4 409 44.3
Sopen01g034110 Solanum pennellii HOM05D003920 ORTHO05D004877 5.1e-92 342.0 352 47.4
THA.LOC104819067 Tarenaya hassleriana HOM05D003920 ORTHO05D004877 5.1e-92 342.0 343 48.7
EL10Ac2g04315 Beta vulgaris HOM05D003920 ORTHO05D004877 2.6e-91 339.7 335 49.6
SalBow5G4770 Salvia bowleyana HOM05D003920 ORTHO05D004877 4.4e-91 339.0 345 48.4
Nitab4.5_0011837g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 5.7e-91 338.6 368 45.9
Solyc01g087030.3 Solanum lycopersicum HOM05D003920 ORTHO05D004877 9.7e-91 337.8 352 46.9
SGA_v2.0_scaffold167G38446 Striga asiatica HOM05D003920 ORTHO05D004877 1.3e-90 337.4 340 48.2
QL04p007133 Quercus lobata HOM05D003920 ORTHO05D004877 2.8e-90 336.3 324 49.4
AUR62009376 Chenopodium quinoa HOM05D003920 ORTHO05D004877 8.2e-90 334.7 343 48.4
Thhalv10021103m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 1.8e-89 333.6 326 47.9
Gohir.D08G166100 Gossypium hirsutum HOM05D003920 ORTHO05D004877 4.1e-89 332.4 277 54.9
FAN01G3017 Fragaria x ananassa HOM05D003920 ORTHO05D004877 7.0e-89 331.6 323 49.8
FAN03G2194 Fragaria x ananassa HOM05D003920 ORTHO05D004877 9.1e-89 331.3 323 49.8
AL3G19480 Arabidopsis lyrata HOM05D003920 ORTHO05D004877 1.2e-88 330.9 340 46.2
RcHm_v2.0_Chr1g0315781 Rosa chinensis HOM05D003920 ORTHO05D004877 1.5e-88 330.5 323 49.8
CSS0030964 Camellia sinensis var. sinensis HOM05D003920 ORTHO05D004877 2.0e-88 330.1 324 47.8
Atru.chr11.2647 Acer truncatum HOM05D003920 ORTHO05D004877 1.0e-87 327.8 313 47.3
Thecc.01G412100 Theobroma cacao HOM05D003920 ORTHO05D004877 1.3e-87 327.4 321 48.9
Sp3g06990 Schrenkiella parvula HOM05D003920 ORTHO05D004877 6.5e-87 325.1 341 46.9
Cc02_g27790 Coffea canephora HOM05D003920 ORTHO05D004877 8.5e-87 324.7 324 49.4
CARHR082810 Cardamine hirsuta HOM05D003920 ORTHO05D004877 1.1e-86 324.3 217 62.7
Aa31LG10G17420 Aethionema arabicum HOM05D003920 ORTHO05D004877 1.4e-86 323.9 416 39.9
Carub.0003s0765 Capsella rubella HOM05D003920 ORTHO05D004877 1.4e-86 323.9 340 45.9
A08p10660 Brassica napus HOM05D003920 ORTHO05D004877 1.6e-85 320.5 311 46.6
Haze_03212 Corylus avellana HOM05D003920 ORTHO05D004877 1.6e-85 320.5 319 48.0
Lsat_1_v5_gn_1_107981 Lactuca sativa HOM05D003920 ORTHO05D004877 1.6e-85 320.5 306 49.0
AagrBONN_evm.TU.Sc2ySwM_344.3645 Anthoceros agrestis HOM05D003920 ORTHO05D004877 2.1e-85 320.1 321 46.4
BolC8t48154H Brassica oleracea HOM05D003920 ORTHO05D004877 3.0e-84 316.2 311 46.9
TWI53G1741 Tripterygium wilfordii HOM05D003920 ORTHO05D004877 3.9e-84 315.8 287 50.5
BcaB04g21254 Brassica carinata HOM05D003920 ORTHO05D004877 5.2e-84 315.5 317 46.7
BraA03t12740Z Brassica rapa HOM05D003920 ORTHO05D004877 6.7e-84 315.1 232 59.1
BolC8t49780H Brassica oleracea HOM05D003920 ORTHO05D004877 1.1e-83 314.3 311 46.6
AL5G46410 Arabidopsis lyrata HOM05D003920 ORTHO05D004877 2.0e-83 313.5 314 47.8
BcaB03g11569 Brassica carinata HOM05D003920 ORTHO05D004877 4.4e-83 312.4 231 57.6
A03p35650 Brassica napus HOM05D003920 ORTHO05D004877 7.4e-83 311.6 225 59.1
BraA01t04343Z Brassica rapa HOM05D003920 ORTHO05D004877 2.2e-82 310.1 217 58.5
BcaC09g47976 Brassica carinata HOM05D003920 ORTHO05D004877 2.8e-82 309.7 217 58.1
BolC3t16599H Brassica oleracea HOM05D003920 ORTHO05D004877 2.8e-82 309.7 218 61.5
C03p43290 Brassica napus HOM05D003920 ORTHO05D004877 2.4e-81 306.6 211 61.6
Zm00001eb252860 Zea mays HOM05D003920 ORTHO05D004877 9.1e-81 304.7 323 47.1
BcaC01g04265 Brassica carinata HOM05D003920 ORTHO05D004877 1.6e-80 303.9 211 61.1
MSTRG.20593 Avicennia marina HOM05D003920 ORTHO05D004877 2.0e-80 303.5 346 44.8
Thhalv10023829m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 2.6e-80 303.1 347 43.5
Carub.0005s3016 Capsella rubella HOM05D003920 ORTHO05D004877 1.0e-79 301.2 317 44.8
Lj7A569G59 Lonicera japonica HOM05D003920 ORTHO05D004877 1.7e-79 300.4 289 48.1
Aa31LG5G18640 Aethionema arabicum HOM05D003920 ORTHO05D004877 1.1e-78 297.7 219 58.9
CsaV3_7G031170 Cucumis sativus L. HOM05D003920 ORTHO05D004877 1.5e-78 297.4 328 44.2
Nitab4.5_0001299g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 5.5e-78 295.4 336 45.8
MELO3C023541.2 Cucumis melo HOM05D003920 ORTHO05D004877 7.2e-78 295.0 318 46.2
Actinidia24671 Actinidia chinensis HOM05D003920 ORTHO05D004877 4.0e-76 289.3 269 52.4
C08p21410 Brassica napus HOM05D003920 ORTHO05D004877 1.2e-75 287.7 189 60.8
ClCG09G004250 Citrullus lanatus HOM05D003920 ORTHO05D004877 7.5e-75 285.0 290 46.9
Peaxi162Scf00148g00610 Petunia axillaris HOM05D003920 ORTHO05D004877 1.0e-71 274.6 316 43.0
Sabra04G0083700 Salix brachista HOM05D003920 ORTHO05D004877 2.9e-71 273.1 289 43.9
Manes.07G005000 Manihot esculenta HOM05D003920 ORTHO05D004877 5.5e-70 268.9 292 45.9
Hund03665 Selenicereus undatus HOM05D003920 ORTHO05D004877 1.0e-68 264.6 313 45.7
BcaC07g39147 Brassica carinata HOM05D003920 ORTHO05D004877 4.0e-68 262.7 315 42.9
Sp5g00030 Schrenkiella parvula HOM05D003920 ORTHO05D004877 5.2e-68 262.3 341 39.9
Potri.004G134400 Populus trichocarpa HOM05D003920 ORTHO05D004877 6.8e-68 261.9 288 41.7
Nitab4.5_0004786g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 5.7e-67 258.8 340 42.1
PGR044G2672 Punica granatum HOM05D003920 ORTHO05D004877 5.7e-67 258.8 328 40.5
AUR62023057 Chenopodium quinoa HOM05D003920 ORTHO05D004877 3.7e-66 256.1 290 44.8
Gohir.A08G145200 Gossypium hirsutum HOM05D003920 ORTHO05D004877 2.4e-65 253.4 279 45.9
Actinidia36714 Actinidia chinensis HOM05D003920 ORTHO05D004877 4.1e-65 252.7 339 41.0
Cre06.g278136 Chlamydomonas reinhardtii HOM05D003920 ORTHO05D004877 7.7e-64 248.4 219 52.1
SGA_v2.0_scaffold24G10678 Striga asiatica HOM05D003920 ORTHO05D004877 1.3e-63 247.7 194 52.6
Glyma.15G273000 Glycine max HOM05D003920 ORTHO05D004877 3.8e-63 246.1 313 41.2
arahy.Tifrunner.gnm1.ann1.3CZ6TN Arachis hypogaea HOM05D003920 ORTHO05D004877 1.1e-62 244.6 316 40.8
Glyma.08G154100 Glycine max HOM05D003920 ORTHO05D004877 4.2e-62 242.7 314 41.4
vmacro08182 Vaccinium macrocarpon HOM05D003920 ORTHO05D004877 2.8e-61 240.0 300 43.7
Lalb_Chr01g0015331 Lupinus albus HOM05D003920 ORTHO05D004877 1.0e-60 238.0 315 40.3
arahy.Tifrunner.gnm1.ann1.NHZH5I Arachis hypogaea HOM05D003920 ORTHO05D004877 6.8e-60 235.3 312 40.1
VMungo1080G1751 Vigna mungo HOM05D003920 ORTHO05D004877 8.9e-60 235.0 316 40.5
Lalb_Chr20g0108061 Lupinus albus HOM05D003920 ORTHO05D004877 2.0e-59 233.8 314 38.5
Lj3g0002246 Lotus japonicus HOM05D003920 ORTHO05D004877 3.4e-59 233.0 317 39.1
Psat5g204240 Pisum sativum HOM05D003920 ORTHO05D004877 1.3e-58 231.1 322 38.2
TPR.G12281 Trifolium pratense HOM05D003920 ORTHO05D004877 1.7e-58 230.7 309 37.9
Nitab4.5_0000254g0170 Nicotiana tabacum HOM05D003920 ORTHO05D004877 3.7e-58 229.6 291 40.2
Ca_14370_v3 Cicer arietinum L. HOM05D003920 ORTHO05D004877 4.5e-56 222.6 319 37.9
Medtr3g028170 Medicago truncatula HOM05D003920 ORTHO05D004877 4.5e-56 222.6 310 39.7
Actinidia31057 Actinidia chinensis HOM05D003920 ORTHO05D004877 1.0e-55 221.5 350 36.6
Phvul.005G020000 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 3.3e-54 216.5 314 37.3
PRCOL_00005356 Prasinoderma coloniale HOM05D003920 ORTHO05D004877 1.6e-53 214.2 346 35.0
arahy.Tifrunner.gnm1.ann1.HIY6S0 Arachis hypogaea HOM05D003920 ORTHO05D004877 1.3e-47 194.5 324 36.4
arahy.Tifrunner.gnm1.ann1.YQ2HRW Arachis hypogaea HOM05D003920 ORTHO05D004877 2.5e-46 190.3 328 36.0
Nitab4.5_0003190g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 6.2e-45 185.7 267 37.8
GSVIVG01032073001 Vitis vinifera HOM05D003920 ORTHO05D004877 6.0e-40 169.1 103 67.0
unitig_26.g8826 Utricularia gibba HOM05D003920 ORTHO05D004877 2.3e-39 167.2 130 50.0
Oeu039134.1 Olea europaea HOM05D003920 ORTHO05D004877 5.1e-39 166.0 103 67.0
Phvul.011G110100 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 9.6e-30 135.2 93 55.9
TPR.G31394 Trifolium pratense HOM05D002628 ORTHO05D002785 2.7e-16 90.5 125 36.8
SMO203G0166 Selaginella moellendorffii HOM05D003920 ORTHO05D004877 2.6e-11 73.9 69 47.8
QL04p032014 Quercus lobata HOM05D003920 ORTHO05D004877 8.4e-10 68.9 38 65.8
QL04p032319 Quercus lobata HOM05D003920 ORTHO05D004877 3.2e-09 67.0 37 64.9
Cc02_g27780 Coffea canephora HOM05D003920 ORTHO05D017698 1.0e-07 62.0 36 75.0
QL04p005704 Quercus lobata HOM05D003920 ORTHO05D004877 1.0e-07 62.0 47 53.2
BolC8t48153H Brassica oleracea HOM05D003920 ORTHO05D017698 5.1e-07 59.7 40 67.5
BolC8t49779H Brassica oleracea HOM05D003920 ORTHO05D017698 2.5e-06 57.4 36 72.2
BraA08t34788Z Brassica rapa HOM05D003920 ORTHO05D017698 2.5e-06 57.4 36 72.2
MBI17_g06171_MAGBIO Magnolia biondii HOM05D003920 ORTHO05D017698 5.6e-06 56.2 38 63.2


User provided reference genes

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