Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c5_24890 Physcomitrium patens HOM05D005924 ORTHO05D007290 2.6e-80 302.0 150 100.0
Pp3c6_3770 Physcomitrium patens HOM05D005924 ORTHO05D007290 2.1e-66 255.8 151 84.8
Mapoly0038s0106 Marchantia polymorpha HOM05D005924 ORTHO05D007290 3.7e-34 148.7 146 56.8
CiPaw.12G137600 Carya illinoinensis HOM05D005924 ORTHO05D007290 6.2e-26 121.3 131 49.6
Prupe.4G242300 Prunus persica HOM05D005924 ORTHO05D007290 3.1e-25 119.0 148 44.6
Nn1g03196 Nelumbo nucifera HOM05D005924 ORTHO05D007290 1.2e-24 117.1 147 48.3
QL11p054318 Quercus lobata HOM05D005924 ORTHO05D007290 2.0e-24 116.3 148 43.9
Cfa020200 Carpinus fangiana HOM05D005924 ORTHO05D007290 2.6e-24 115.9 144 45.1
Haze_09815 Corylus avellana HOM05D005924 ORTHO05D007290 3.4e-24 115.5 144 45.1
MD03G1184300 Malus domestica HOM05D005924 ORTHO05D007290 3.4e-24 115.5 151 44.4
Ciclev10009817m.g Citrus clementina HOM05D005924 ORTHO05D007290 4.5e-24 115.2 132 48.5
QL08p004337 Quercus lobata HOM05D005924 ORTHO05D007290 4.5e-24 115.2 148 43.2
SEGI_16066 Sequoiadendron giganteum HOM05D005924 ORTHO05D007290 4.5e-24 115.2 147 49.0
Actinidia26779 Actinidia chinensis HOM05D005924 ORTHO05D007290 5.8e-24 114.8 144 47.2
Dinv40851 Davidia involucrata HOM05D005924 ORTHO05D007290 7.6e-24 114.4 135 47.4
arahy.Tifrunner.gnm1.ann1.7P25LN Arachis hypogaea HOM05D005924 ORTHO05D007290 1.0e-23 114.0 131 46.6
arahy.Tifrunner.gnm1.ann1.RJW0MD Arachis hypogaea HOM05D005924 ORTHO05D007290 1.0e-23 114.0 131 46.6
MD11G1201100 Malus domestica HOM05D005924 ORTHO05D007290 1.0e-23 114.0 144 45.8
Hund23125 Selenicereus undatus HOM05D005924 ORTHO05D007290 1.0e-23 114.0 136 47.8
CSS0025987 Camellia sinensis var. sinensis HOM05D005924 ORTHO05D007290 1.3e-23 113.6 147 46.9
CSS0049690 Camellia sinensis var. sinensis HOM05D005924 ORTHO05D007290 1.3e-23 113.6 147 46.9
FvH4_3g29370 Fragaria vesca HOM05D005924 ORTHO05D007290 1.7e-23 113.2 146 43.2
FAN11G0697 Fragaria x ananassa HOM05D005924 ORTHO05D007290 1.7e-23 113.2 146 43.2
FAN21G3132 Fragaria x ananassa HOM05D005924 ORTHO05D007290 1.7e-23 113.2 146 43.2
PSO302G0279 Papaver somniferum HOM05D005924 ORTHO05D007290 1.7e-23 113.2 144 46.5
CiPaw.11G203100 Carya illinoinensis HOM05D005924 ORTHO05D007290 2.2e-23 112.8 145 46.2
FAN25G0770 Fragaria x ananassa HOM05D005924 ORTHO05D007290 2.2e-23 112.8 148 43.9
ATR0624G098 Amborella trichopoda HOM05D005924 ORTHO05D007290 2.9e-23 112.5 145 47.6
Gohir.A04G006200 Gossypium hirsutum HOM05D005924 ORTHO05D007290 2.9e-23 112.5 136 44.9
Thhalv10014966m.g Eutrema salsugineum HOM05D005924 ORTHO05D007290 3.8e-23 112.1 131 47.3
Gohir.D05G383300 Gossypium hirsutum HOM05D005924 ORTHO05D007290 4.9e-23 111.7 136 44.9
Carub.0008s1601 Capsella rubella HOM05D005924 ORTHO05D007290 8.4e-23 110.9 137 46.0
Duzib213G0633 Durio zibethinus HOM05D005924 ORTHO05D007290 8.4e-23 110.9 148 45.3
PSO210G6324 Papaver somniferum HOM05D005924 ORTHO05D007290 1.1e-22 110.5 144 45.1
COL.COLO4_09820 Corchorus olitorius HOM05D005924 ORTHO05D007290 1.4e-22 110.2 146 45.9
Nitab4.5_0000461g0270 Nicotiana tabacum HOM05D005924 ORTHO05D007290 1.9e-22 109.8 141 44.0
GSVIVG01014668001 Vitis vinifera HOM05D005924 ORTHO05D007290 1.9e-22 109.8 141 44.7
CsaV3_7G015090 Cucumis sativus L. HOM05D005924 ORTHO05D007290 3.2e-22 109.0 133 47.4
Migut.H01759 Erythranthe guttata HOM05D005924 ORTHO05D007290 3.2e-22 109.0 151 43.7
Lj6g0020710 Lotus japonicus HOM05D005924 ORTHO05D007290 3.2e-22 109.0 146 44.5
Psat2g007680 Pisum sativum HOM05D000001 ORTHO05D000003 3.2e-22 109.0 135 45.9
PGR083G1797 Punica granatum HOM05D005924 ORTHO05D007290 3.2e-22 109.0 146 46.6
Rhsim04G0012900 Rhododendron simsii HOM05D005924 ORTHO05D007290 3.2e-22 109.0 146 45.2
ClCG09G021250 Citrullus lanatus HOM05D005924 ORTHO05D007290 4.2e-22 108.6 133 48.1
Sp6g17560 Schrenkiella parvula HOM05D005924 ORTHO05D007290 4.2e-22 108.6 136 44.1
Sed0014433 Sechium edule HOM05D005924 ORTHO05D007290 4.2e-22 108.6 135 47.4
Lalb_Chr04g0247881 Lupinus albus HOM05D005924 ORTHO05D007290 5.5e-22 108.2 150 42.0
TAR629G1982 Trochodendron aralioides HOM05D001060 ORTHO05D000905 5.5e-22 108.2 147 46.9
ECA246G3128 Erigeron canadensis HOM05D005924 ORTHO05D007290 7.1e-22 107.8 148 45.3
Hma1.2p1_0036F.1_g022440 Hydrangea macrophylla HOM05D005924 ORTHO05D007290 7.1e-22 107.8 131 47.3
vmacro09651 Vaccinium macrocarpon HOM05D005924 ORTHO05D007290 7.1e-22 107.8 148 44.6
AL8G31220 Arabidopsis lyrata HOM05D005924 ORTHO05D007290 9.3e-22 107.5 144 43.1
Manes.15G060600 Manihot esculenta HOM05D005924 ORTHO05D007290 9.3e-22 107.5 133 46.6
Nitab4.5_0014607g0010 Nicotiana tabacum HOM05D005924 ORTHO05D007290 2.1e-21 106.3 145 44.1
Potri.001G367200 Populus trichocarpa HOM05D005924 ORTHO05D007290 2.1e-21 106.3 131 47.3
TPR.G8617 Trifolium pratense HOM05D005924 ORTHO05D007290 2.1e-21 106.3 133 46.6
Aqoxy1G04252 Aquilegia oxysepala HOM05D005924 ORTHO05D007290 2.7e-21 105.9 142 44.4
AT5G55640 Arabidopsis thaliana HOM05D005924 ORTHO05D007290 2.7e-21 105.9 135 46.7
Ca_06392_v3 Cicer arietinum L. HOM05D005924 ORTHO05D007290 2.7e-21 105.9 132 46.2
SGA_v2.0_scaffold8G04406 Striga asiatica HOM05D005924 ORTHO05D007290 2.7e-21 105.9 145 43.4
CSS0023895 Camellia sinensis var. sinensis HOM05D005924 ORTHO05D007290 3.5e-21 105.5 136 44.1
DCAR_018844 Daucus carota HOM05D005924 ORTHO05D007290 3.5e-21 105.5 131 44.3
RcHm_v2.0_Chr5g0053761 Rosa chinensis HOM05D005924 ORTHO05D007290 3.5e-21 105.5 132 44.7
Sabra16G0240500 Salix brachista HOM05D005924 ORTHO05D007290 4.6e-21 105.1 131 47.3
CDE10G1040 Ceratophyllum demersum HOM05D005924 ORTHO05D007290 6.0e-21 104.8 144 47.2
AUR62036411 Chenopodium quinoa HOM05D005924 ORTHO05D007290 7.9e-21 104.4 139 45.3
Dinv10325 Davidia involucrata HOM05D005924 ORTHO05D007290 7.9e-21 104.4 147 44.9
MSTRG.13019 Avicennia marina HOM05D005924 ORTHO05D007290 1.3e-20 103.6 136 45.6
CANSAT11G0122 Cannabis sativa HOM05D005924 ORTHO05D007290 1.3e-20 103.6 150 44.7
Oeu057095.1 Olea europaea HOM05D005924 ORTHO05D007290 1.3e-20 103.6 135 47.4
Peaxi162Scf01164g00127 Petunia axillaris HOM05D005924 ORTHO05D007290 1.3e-20 103.6 133 45.9
Actinidia30411 Actinidia chinensis HOM05D005924 ORTHO05D007290 1.8e-20 103.2 147 44.2
EL10Ac4g07594 Beta vulgaris HOM05D005924 ORTHO05D007290 1.8e-20 103.2 145 43.4
PGSC0003DMG400022173 Solanum tuberosum HOM05D005924 ORTHO05D007290 1.8e-20 103.2 145 42.1
AUR62036442 Chenopodium quinoa HOM05D005924 ORTHO05D007290 2.3e-20 102.8 139 44.6
Gorai.009G449900 Gossypium raimondii HOM05D005924 ORTHO05D007290 2.3e-20 102.8 143 42.0
VMungo0647G1823 Vigna mungo HOM05D005924 ORTHO05D007290 2.3e-20 102.8 131 45.8
MELO3C024930.2 Cucumis melo HOM05D005924 ORTHO05D007290 3.0e-20 102.4 133 45.1
Thecc.07G014800 Theobroma cacao HOM05D005924 ORTHO05D007290 3.9e-20 102.1 145 41.4
TWI39G1162 Tripterygium wilfordii HOM05D005924 ORTHO05D007290 5.1e-20 101.7 151 43.7
Medtr5g095700 Medicago truncatula HOM05D005924 ORTHO05D007290 8.7e-20 100.9 135 47.4
Solyc07g065480.3 Solanum lycopersicum HOM05D005924 ORTHO05D007290 8.7e-20 100.9 136 42.6
Lj8A178T78 Lonicera japonica HOM05D005924 ORTHO05D007290 1.1e-19 100.5 129 45.7
Oeu049375.1 Olea europaea HOM05D005924 ORTHO05D007290 1.1e-19 100.5 136 44.9
Phvul.008G278700 Phaseolus vulgaris HOM05D005924 ORTHO05D007290 1.1e-19 100.5 131 45.0
AUR62017085 Chenopodium quinoa HOM05D005924 ORTHO05D007290 1.5e-19 100.1 138 45.7
Aa31LG3G11590 Aethionema arabicum HOM05D005924 ORTHO05D007290 1.9e-19 99.8 142 41.5
Eucgr.F02053 Eucalyptus grandis HOM05D005924 ORTHO05D007290 1.9e-19 99.8 131 43.5
Lsat_1_v5_gn_5_1420 Lactuca sativa HOM05D005924 ORTHO05D007290 1.9e-19 99.8 154 42.9
BcaC04g20212 Brassica carinata HOM05D005924 ORTHO05D007290 2.5e-19 99.4 134 44.0
C09p46620 Brassica napus HOM05D005924 ORTHO05D007290 2.5e-19 99.4 134 44.0
Cc05_g14880 Coffea canephora HOM05D005924 ORTHO05D007290 2.5e-19 99.4 145 42.8
Glyma.02G300000 Glycine max HOM05D005924 ORTHO05D007290 2.5e-19 99.4 131 44.3
Sed0006731 Sechium edule HOM05D005924 ORTHO05D007290 2.5e-19 99.4 135 45.2
Sopen07g033690 Solanum pennellii HOM05D005924 ORTHO05D007290 2.5e-19 99.4 136 41.9
SMO145G0101 Selaginella moellendorffii HOM05D005924 ORTHO05D007290 3.3e-19 99.0 162 43.2
THA.LOC104811656 Tarenaya hassleriana HOM05D005924 ORTHO05D007290 4.3e-19 98.6 136 43.4
TWI38G0037 Tripterygium wilfordii HOM05D005924 ORTHO05D007290 4.3e-19 98.6 154 43.5
HanXRQChr08g0231191 Helianthus annuus HOM05D005924 ORTHO05D007290 5.7e-19 98.2 131 45.8
BolC9t57514H Brassica oleracea HOM05D005924 ORTHO05D007290 7.4e-19 97.8 131 44.3
MBI19_g12833_MAGBIO Magnolia biondii HOM05D005924 ORTHO05D007290 7.4e-19 97.8 137 44.5
CDE10G1343 Ceratophyllum demersum HOM05D005924 ORTHO05D007290 9.7e-19 97.4 131 45.0
Glyma.14G013900 Glycine max HOM05D005924 ORTHO05D007290 1.3e-18 97.1 136 41.9
Cpa.g.sc12.154 Carica papaya HOM05D005924 ORTHO05D007290 1.6e-18 96.7 126 44.4
HPP92_006039 Vanilla planifolia HOM05D005924 ORTHO05D007290 1.6e-18 96.7 86 57.0
Actinidia37157 Actinidia chinensis HOM05D005924 ORTHO05D007290 2.2e-18 96.3 132 44.7
Ah.06g181380 Amaranthus hybridus HOM05D000864 ORTHO05D002353 3.7e-18 95.5 127 45.7
BcaB08g35925 Brassica carinata HOM05D005924 ORTHO05D007290 4.8e-18 95.1 130 42.3
Sc16g0008020 Simmondsia chinensis HOM05D005924 ORTHO05D007290 6.3e-18 94.7 134 43.3
unitig_0.g996 Utricularia gibba HOM05D005924 ORTHO05D007290 4.1e-17 92.0 136 41.2
CARHR268960 Cardamine hirsuta HOM05D005924 ORTHO05D007290 1.5e-16 90.1 131 42.0
MBI16_g07767_MAGBIO Magnolia biondii HOM05D005924 ORTHO05D007290 2.6e-16 89.4 132 43.2
Oeu049390.1 Olea europaea HOM05D005924 ORTHO05D007290 5.9e-16 88.2 126 42.1
BraA10t43385Z Brassica rapa HOM05D005924 ORTHO05D007290 1.3e-15 87.0 134 41.8
Zm00001eb049780 Zea mays HOM05D005924 ORTHO05D007290 1.7e-15 86.7 148 38.5
Atru.BG.148.p Acer truncatum HOM05D005924 ORTHO05D007290 8.5e-15 84.3 87 52.9
C09p47070 Brassica napus HOM05D005924 ORTHO05D007290 8.5e-15 84.3 128 40.6
A10p12930 Brassica napus HOM05D005924 ORTHO05D007290 1.1e-14 84.0 134 41.0
Os03g0595200 Oryza sativa ssp. japonica HOM05D005924 ORTHO05D007290 1.4e-14 83.6 126 39.7
BcaC04g20171 Brassica carinata HOM05D005924 ORTHO05D007290 9.3e-14 80.9 87 50.6
AagrBONN_evm.TU.Sc2ySwM_340.252 Anthoceros agrestis HOM05D005924 ORTHO05D007290 1.4e-12 77.0 107 46.7
QL08p004311 Quercus lobata HOM05D005924 ORTHO05D007290 6.7e-12 74.7 68 50.0
Manes.03G140800 Manihot esculenta HOM05D005924 ORTHO05D007290 1.4e-09 67.0 114 41.2
AagrBONN_evm.TU.Sc2ySwM_340.382 Anthoceros agrestis HOM05D005924 ORTHO05D007290 1.5e-08 63.5 151 34.4
CBR_g27765 Chara braunii HOM05D005924 ORTHO05D007290 4.5e-08 62.0 134 34.3
arahy.Tifrunner.gnm1.ann1.HJ67LJ Arachis hypogaea HOM05D005924 ORTHO05D007290 1.7e-07 60.1 99 38.4
BolC9t57844H Brassica oleracea HOM05D005924 ORTHO05D007290 1.1e-06 57.4 99 42.4
Os03g0412200 Oryza sativa ssp. japonica HOM05D005924 ORTHO05D007290 9.4e-06 54.3 102 37.3


User provided reference genes

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