Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c5_24720 Physcomitrium patens HOM05D004316 ORTHO05D005149 0.0e+00 1105.1 562 100.0
Pp3c6_3920 Physcomitrium patens HOM05D004316 ORTHO05D005149 3.0e-129 466.5 466 57.9
Mapoly0109s0039 Marchantia polymorpha HOM05D004316 ORTHO05D005149 6.2e-103 379.0 595 41.5
Pp3c3_2450 Physcomitrium patens HOM05D004316 ORTHO05D005149 3.9e-97 359.8 573 39.6
Pp3c13_6400 Physcomitrium patens HOM05D004316 ORTHO05D005149 3.5e-90 336.7 524 40.3
AagrBONN_evm.TU.Sc2ySwM_362.2535 Anthoceros agrestis HOM05D004316 ORTHO05D005149 1.1e-88 331.6 618 35.4
SEGI_13236 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 2.8e-87 327.0 596 35.6
SEGI_35991 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 2.8e-87 327.0 596 35.6
Mapoly0052s0060 Marchantia polymorpha HOM05D004316 ORTHO05D005149 3.3e-80 303.5 577 35.5
Pp3c20_13470 Physcomitrium patens HOM05D004316 ORTHO05D005149 5.0e-68 263.1 480 35.2
Pp3c23_16170 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.9e-67 261.2 495 36.0
Pp3c8_14130 Physcomitrium patens HOM05D004316 ORTHO05D005149 9.4e-67 258.8 572 32.7
SMO201G0108 Selaginella moellendorffii HOM05D004316 ORTHO05D005149 9.1e-54 215.7 517 32.3
ATR0782G190 Amborella trichopoda HOM05D004316 ORTHO05D005149 1.0e-52 212.2 499 30.9
TAR623G0492 Trochodendron aralioides HOM05D004316 ORTHO05D005149 1.5e-43 181.8 556 27.7
CiPaw.09G038700 Carya illinoinensis HOM05D004316 ORTHO05D005149 1.4e-41 175.3 568 25.9
CiPaw.10G033700 Carya illinoinensis HOM05D004316 ORTHO05D005149 1.7e-39 168.3 574 28.0
Nn2g15213 Nelumbo nucifera HOM05D004316 ORTHO05D005149 2.8e-39 167.5 571 26.3
Haze_19850 Corylus avellana HOM05D004316 ORTHO05D005149 3.7e-39 167.2 559 27.7
Dinv12489 Davidia involucrata HOM05D004316 ORTHO05D005149 1.4e-38 165.2 310 35.8
Cfa016810 Carpinus fangiana HOM05D004316 ORTHO05D005149 1.8e-38 164.9 558 26.7
TAR633G0189 Trochodendron aralioides HOM05D004316 ORTHO05D005149 1.8e-38 164.9 557 26.2
MSTRG.19858 Avicennia marina HOM05D004316 ORTHO05D005149 2.4e-38 164.5 557 26.8
CSS0028183 Camellia sinensis var. sinensis HOM05D004316 ORTHO05D005149 3.1e-38 164.1 557 26.6
Manes.09G020900 Manihot esculenta HOM05D004316 ORTHO05D005149 4.1e-38 163.7 554 25.8
Duzib128G1660 Durio zibethinus HOM05D004316 ORTHO05D005149 9.2e-38 162.5 557 26.8
Thecc.05G152800 Theobroma cacao HOM05D004316 ORTHO05D005149 2.0e-37 161.4 555 27.4
Aqoxy1G00235 Aquilegia oxysepala HOM05D004316 ORTHO05D005149 1.0e-36 159.1 475 29.3
PSO339G4967 Papaver somniferum HOM05D004316 ORTHO05D005149 1.7e-36 158.3 549 26.2
Sabra16G0058800 Salix brachista HOM05D004316 ORTHO05D005149 1.7e-36 158.3 337 34.1
Atru.chr1.1110 Acer truncatum HOM05D004316 ORTHO05D005149 2.3e-36 157.9 335 31.9
CANSAT80G0327 Cannabis sativa HOM05D004316 ORTHO05D005149 2.9e-36 157.5 309 33.3
QL07p000671 Quercus lobata HOM05D004316 ORTHO05D005149 6.6e-36 156.4 554 24.9
Potri.006G050100 Populus trichocarpa HOM05D004316 ORTHO05D005149 1.1e-35 155.6 555 25.6
Duzib093G1448 Durio zibethinus HOM05D004316 ORTHO05D005149 1.9e-35 154.8 334 32.0
TWI74G1076 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 1.9e-35 154.8 265 37.7
Cpa.g.sc33.204 Carica papaya HOM05D004316 ORTHO05D005149 2.5e-35 154.5 305 34.4
Thhalv10006507m.g Eutrema salsugineum HOM05D004316 ORTHO05D005149 2.5e-35 154.5 217 39.6
Gohir.D01G120400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 2.5e-35 154.5 314 32.8
Potri.016G056300 Populus trichocarpa HOM05D004316 ORTHO05D005149 2.5e-35 154.5 551 26.3
Sed0026358 Sechium edule HOM05D004316 ORTHO05D005149 2.5e-35 154.5 293 34.1
Gohir.A01G131000 Gossypium hirsutum HOM05D004316 ORTHO05D005149 3.3e-35 154.1 313 32.6
Gorai.002G147000 Gossypium raimondii HOM05D004316 ORTHO05D005149 3.3e-35 154.1 314 32.5
RcHm_v2.0_Chr3g0482601 Rosa chinensis HOM05D004316 ORTHO05D005149 3.3e-35 154.1 311 34.1
AL5G38930 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 5.6e-35 153.3 228 41.2
CDE08G1472 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 5.6e-35 153.3 311 31.8
PSO384G0452 Papaver somniferum HOM05D004316 ORTHO05D005149 5.6e-35 153.3 546 26.0
Prupe.7G058900 Prunus persica HOM05D004316 ORTHO05D005149 5.6e-35 153.3 305 33.8
CDE09G0122 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 7.3e-35 152.9 302 32.5
Dinv39612 Davidia involucrata HOM05D004316 ORTHO05D005149 7.3e-35 152.9 218 42.2
Eucgr.A02343 Eucalyptus grandis HOM05D004316 ORTHO05D005149 1.2e-34 152.1 231 40.7
MD12G1074600 Malus domestica HOM05D004316 ORTHO05D005149 1.2e-34 152.1 299 34.4
arahy.Tifrunner.gnm1.ann1.WY7AF9 Arachis hypogaea HOM05D004316 ORTHO05D005149 1.6e-34 151.8 553 26.0
Duzib152G0001 Durio zibethinus HOM05D004316 ORTHO05D005149 1.6e-34 151.8 300 34.3
Aa31LG10G12240 Aethionema arabicum HOM05D004316 ORTHO05D005149 2.1e-34 151.4 295 33.6
MSTRG.6426 Avicennia marina HOM05D004316 ORTHO05D005149 2.8e-34 151.0 296 33.1
Migut.J01754 Erythranthe guttata HOM05D004316 ORTHO05D005149 2.8e-34 151.0 259 37.8
Duzib106G1406 Durio zibethinus HOM05D004316 ORTHO05D005149 4.7e-34 150.2 315 33.0
BcaC02g09937 Brassica carinata HOM05D004316 ORTHO05D005149 6.1e-34 149.8 215 39.5
C04p35000 Brassica napus HOM05D004316 ORTHO05D005149 6.1e-34 149.8 215 39.5
BolC4t25057H Brassica oleracea HOM05D004316 ORTHO05D005149 6.1e-34 149.8 215 39.5
AT3G57400 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 8.0e-34 149.4 223 39.5
arahy.Tifrunner.gnm1.ann1.7DG8CI Arachis hypogaea HOM05D004316 ORTHO05D005149 8.0e-34 149.4 298 33.6
COL.COLO4_28298 Corchorus olitorius HOM05D004316 ORTHO05D005149 1.0e-33 149.1 305 33.4
Gorai.007G360600 Gossypium raimondii HOM05D004316 ORTHO05D005149 1.0e-33 149.1 226 38.9
PGR004G2076 Punica granatum HOM05D004316 ORTHO05D005149 1.4e-33 148.7 297 32.0
Oeu023579.1 Olea europaea HOM05D004316 ORTHO05D005149 1.8e-33 148.3 548 26.3
Oeu033010.1 Olea europaea HOM05D004316 ORTHO05D005149 2.3e-33 147.9 559 26.1
BcaB02g07608 Brassica carinata HOM05D004316 ORTHO05D005149 3.0e-33 147.5 220 38.6
BcaC08g44838 Brassica carinata HOM05D004316 ORTHO05D005149 3.0e-33 147.5 290 34.5
C06p24450 Brassica napus HOM05D004316 ORTHO05D005149 3.0e-33 147.5 290 34.5
BolC6t37592H Brassica oleracea HOM05D004316 ORTHO05D005149 3.0e-33 147.5 290 34.5
DCAR_013604 Daucus carota HOM05D004316 ORTHO05D005149 3.0e-33 147.5 466 27.3
A04p03150 Brassica napus HOM05D004316 ORTHO05D005149 4.0e-33 147.1 237 36.3
Ciclev10004677m.g Citrus clementina HOM05D004316 ORTHO05D005149 4.0e-33 147.1 579 25.0
Sp5g05200 Schrenkiella parvula HOM05D004316 ORTHO05D005149 4.0e-33 147.1 297 34.0
SGA_v2.0_scaffold105G30405 Striga asiatica HOM05D004316 ORTHO05D005149 4.0e-33 147.1 478 28.7
Gohir.D11G329400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 5.2e-33 146.7 226 38.1
BcaB02g08317 Brassica carinata HOM05D004316 ORTHO05D005149 6.8e-33 146.4 251 37.5
A07p23380 Brassica napus HOM05D004316 ORTHO05D005149 8.9e-33 146.0 247 36.8
CARHR167600 Cardamine hirsuta HOM05D004316 ORTHO05D005149 1.5e-32 145.2 299 33.4
Lalb_Chr20g0110531 Lupinus albus HOM05D004316 ORTHO05D005149 2.0e-32 144.8 333 32.1
BolC8t50893H Brassica oleracea HOM05D004316 ORTHO05D005149 2.6e-32 144.4 215 40.0
Sabra06G0035000 Salix brachista HOM05D004316 ORTHO05D005149 2.6e-32 144.4 475 26.3
AT5G52500 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 3.4e-32 144.1 366 30.6
Gohir.A11G312700 Gossypium hirsutum HOM05D004316 ORTHO05D005149 3.4e-32 144.1 237 37.1
MD14G1072700 Malus domestica HOM05D004316 ORTHO05D005149 3.4e-32 144.1 297 35.4
Nn7g36300 Nelumbo nucifera HOM05D004316 ORTHO05D005149 3.4e-32 144.1 234 38.5
C08p32820 Brassica napus HOM05D004316 ORTHO05D005149 5.7e-32 143.3 215 39.5
SGA_v2.0_scaffold66G22353 Striga asiatica HOM05D004316 ORTHO05D005149 5.7e-32 143.3 476 28.4
A09p50290 Brassica napus HOM05D004316 ORTHO05D005149 7.5e-32 142.9 216 38.4
BraA09t40480Z Brassica rapa HOM05D004316 ORTHO05D005149 7.5e-32 142.9 216 38.4
TWI53G1538 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 7.5e-32 142.9 228 39.0
THA.LOC104802092 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 1.3e-31 142.1 221 36.7
Cc06_g17600 Coffea canephora HOM05D004316 ORTHO05D005149 1.7e-31 141.7 370 29.7
SalBow6G3548 Salvia bowleyana HOM05D004316 ORTHO05D005149 2.2e-31 141.4 225 38.2
Glyma.02G184700 Glycine max HOM05D004316 ORTHO05D005149 2.9e-31 141.0 251 34.7
Lsat_1_v5_gn_9_29201 Lactuca sativa HOM05D004316 ORTHO05D005149 3.7e-31 140.6 240 34.2
FAN05G0825 Fragaria x ananassa HOM05D004316 ORTHO05D005149 4.9e-31 140.2 226 37.6
SGA_v2.0_scaffold5252G54614 Striga asiatica HOM05D004316 ORTHO05D005149 8.3e-31 139.4 217 39.6
BraA07t30003Z Brassica rapa HOM05D004316 ORTHO05D005149 1.8e-30 138.3 217 39.2
Sopen04g007890 Solanum pennellii HOM05D004316 ORTHO05D005149 2.4e-30 137.9 306 30.7
ClCG04G000170 Citrullus lanatus HOM05D004316 ORTHO05D005149 3.2e-30 137.5 296 34.1
FAN02G3785 Fragaria x ananassa HOM05D004316 ORTHO05D005149 3.2e-30 137.5 225 38.2
THA.LOC104824440 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 3.2e-30 137.5 221 35.3
FAN09G3682 Fragaria x ananassa HOM05D004316 ORTHO05D005149 5.4e-30 136.7 224 36.2
Sc19g0006560 Simmondsia chinensis HOM05D004316 ORTHO05D005149 5.4e-30 136.7 318 30.2
Nitab4.5_0013624g0010 Nicotiana tabacum HOM05D004316 ORTHO05D005149 7.0e-30 136.3 473 24.1
PGSC0003DMG400027281 Solanum tuberosum HOM05D004316 ORTHO05D005149 7.0e-30 136.3 554 25.6
Lsat_1_v5_gn_5_161320 Lactuca sativa HOM05D004316 ORTHO05D005149 9.2e-30 136.0 302 31.1
Glyma.03G136300 Glycine max HOM05D004316 ORTHO05D005149 1.2e-29 135.6 215 37.7
CsaV3_4G011650 Cucumis sativus L. HOM05D004316 ORTHO05D005149 1.6e-29 135.2 296 32.4
FvH4_6g23940 Fragaria vesca HOM05D004316 ORTHO05D005149 1.6e-29 135.2 224 36.6
FAN14G3684 Fragaria x ananassa HOM05D004316 ORTHO05D005149 1.6e-29 135.2 224 36.6
Carub.0005s2424 Capsella rubella HOM05D004316 ORTHO05D005149 2.7e-29 134.4 228 35.5
Nitab4.5_0000586g0080 Nicotiana tabacum HOM05D004316 ORTHO05D005149 2.7e-29 134.4 477 25.2
CAN.G676.33 Capsicum annuum HOM05D004316 ORTHO05D005149 7.8e-29 132.9 219 38.8
MELO3C023147.2 Cucumis melo HOM05D004316 ORTHO05D005149 7.8e-29 132.9 291 32.6
Manes.08G051300 Manihot esculenta HOM05D004316 ORTHO05D005149 7.8e-29 132.9 552 23.4
Solyc10g079390.1 Solanum lycopersicum HOM05D004316 ORTHO05D005149 1.3e-28 132.1 222 35.6
Phvul.001G131600 Phaseolus vulgaris HOM05D004316 ORTHO05D005149 1.7e-28 131.7 213 37.1
unitig_22.g6044 Utricularia gibba HOM05D004316 ORTHO05D005149 1.7e-28 131.7 246 35.4
VMungo1383G1866 Vigna mungo HOM05D004316 ORTHO05D005149 3.0e-28 131.0 213 36.2
Lj1g0001621 Lotus japonicus HOM05D004316 ORTHO05D005149 5.0e-28 130.2 217 38.2
Glyma.19G138200 Glycine max HOM05D004316 ORTHO05D005149 6.6e-28 129.8 217 36.9
Ca_08453_v3 Cicer arietinum L. HOM05D004316 ORTHO05D005149 1.1e-27 129.0 217 35.5
PGSC0003DMG400008166 Solanum tuberosum HOM05D004316 ORTHO05D005149 1.1e-27 129.0 301 31.6
HanXRQChr10g0296681 Helianthus annuus HOM05D004316 ORTHO05D005149 1.5e-27 128.6 225 35.1
Lju124C42T7 Lonicera japonica HOM05D004316 ORTHO05D005149 2.5e-27 127.9 391 28.1
Solyc04g015850.3 Solanum lycopersicum HOM05D004316 ORTHO05D005149 3.3e-27 127.5 287 31.0
Ah.13g076490 Amaranthus hybridus HOM05D004316 ORTHO05D005149 7.3e-27 126.3 290 31.4
Lalb_Chr25g0287141 Lupinus albus HOM05D004316 ORTHO05D005149 7.3e-27 126.3 304 30.6
AUR62024455 Chenopodium quinoa HOM05D004316 ORTHO05D005149 9.5e-27 125.9 219 34.7
Lsat_1_v5_gn_8_81220 Lactuca sativa HOM05D004316 ORTHO05D005149 9.5e-27 125.9 235 33.2
Medtr7g091450 Medicago truncatula HOM05D004316 ORTHO05D005149 9.5e-27 125.9 216 35.6
Peaxi162Scf00130g00012 Petunia axillaris HOM05D004316 ORTHO05D005149 1.2e-26 125.6 221 36.2
SEGI_09580 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 2.8e-26 124.4 135 45.2
Lalb_Chr01g0017331 Lupinus albus HOM05D004316 ORTHO05D005149 3.6e-26 124.0 294 29.9
VMungo0720G0980 Vigna mungo HOM05D004316 ORTHO05D005149 6.2e-26 123.2 216 36.6
Nitab4.5_0000082g0160 Nicotiana tabacum HOM05D004316 ORTHO05D005149 8.0e-26 122.9 387 25.8
AUR62026044 Chenopodium quinoa HOM05D004316 ORTHO05D005149 2.3e-25 121.3 244 34.0
ECA248G0930 Erigeron canadensis HOM05D004316 ORTHO05D005149 3.1e-25 120.9 249 29.7
HanXRQChr13g0395921 Helianthus annuus HOM05D004316 ORTHO05D005149 4.4e-24 117.1 226 31.4
EL10Ac3g07095 Beta vulgaris HOM05D004316 ORTHO05D005149 3.7e-23 114.0 215 33.5
BcaC07g40393 Brassica carinata HOM05D004316 ORTHO05D005149 5.4e-22 110.2 308 29.5
Psat3g072520 Pisum sativum HOM05D004316 ORTHO05D005149 7.8e-21 106.3 200 32.5
Rhsim03G0025000 Rhododendron simsii HOM05D004316 ORTHO05D005149 1.0e-20 105.9 302 29.1
HanXRQChr05g0131861 Helianthus annuus HOM05D004316 ORTHO05D005149 5.0e-20 103.6 216 30.6
SEGI_40609 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 1.1e-19 102.4 491 24.2
TPR.G3718 Trifolium pratense HOM05D004316 ORTHO05D005149 5.8e-16 90.1 168 33.9
unitig_8.g3507 Utricularia gibba HOM05D004316 ORTHO05D005149 6.4e-15 86.7 212 26.9
ECA247G0299 Erigeron canadensis HOM05D004316 ORTHO05D005149 4.1e-14 84.0 154 33.1
AL8G26960 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 3.9e-12 77.4 99 40.4
Actinidia39221 Actinidia chinensis HOM05D004316 ORTHO05D005149 5.1e-12 77.0 166 33.7
AL205U10010 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 6.6e-12 76.6 91 42.9
Actinidia39222 Actinidia chinensis HOM05D004316 ORTHO05D005149 1.9e-11 75.1 104 37.5
GSVIVG01033262001 Vitis vinifera HOM05D004316 ORTHO05D005149 3.6e-10 70.9 133 31.6
Nn1g05572 Nelumbo nucifera HOM05D004316 ORTHO05D022954 4.7e-10 70.5 102 38.2
vmacro07846 Vaccinium macrocarpon HOM05D004316 ORTHO05D005149 1.7e-07 62.0 160 29.4


User provided reference genes

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