Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c5_23900 Physcomitrium patens HOM05D003722 ORTHO05D004589 0.0e+00 2135.9 1279 100.0
Pp3c6_6070 Physcomitrium patens HOM05D003722 ORTHO05D004589 0.0e+00 1266.5 1286 63.5
Mapoly0202s0013 Marchantia polymorpha HOM05D003722 ORTHO05D004589 2.8e-228 796.6 1164 57.5
Pp3c4_12360 Physcomitrium patens HOM05D003722 ORTHO05D004589 4.0e-182 643.3 1010 58.1
Pp3c12_17410 Physcomitrium patens HOM05D003722 ORTHO05D004589 1.7e-172 611.3 1003 49.0
SMO238G0031 Selaginella moellendorffii HOM05D003722 ORTHO05D004589 3.3e-160 570.5 670 66.7
HanXRQChr09g0261801 Helianthus annuus HOM05D003722 ORTHO05D004589 3.8e-156 557.0 898 51.8
SEGI_30451 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 1.4e-155 555.1 991 53.6
Prupe.1G404200 Prunus persica HOM05D003722 ORTHO05D004589 1.2e-154 552.0 989 51.6
ATR0598G202 Amborella trichopoda HOM05D003722 ORTHO05D004589 1.5e-152 545.0 951 53.0
CBR_g11995 Chara braunii HOM05D003722 ORTHO05D004589 1.6e-151 541.6 959 53.1
Dinv02138 Davidia involucrata HOM05D003722 ORTHO05D004589 9.1e-150 535.8 962 52.1
RcHm_v2.0_Chr6g0311801 Rosa chinensis HOM05D003722 ORTHO05D004589 1.5e-149 535.0 930 53.5
GSVIVG01035469001 Vitis vinifera HOM05D003722 ORTHO05D004589 1.3e-148 531.9 987 51.4
TAR624G1180 Trochodendron aralioides HOM05D003722 ORTHO05D004589 9.4e-147 525.8 927 53.7
SEGI_01273 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 7.9e-146 522.7 934 53.4
CiPaw.15G091900 Carya illinoinensis HOM05D003722 ORTHO05D004589 2.6e-141 507.7 989 50.5
Nitab4.5_0000446g0200 Nicotiana tabacum HOM05D003722 ORTHO05D004589 3.4e-141 507.3 928 49.8
TAR636G3697 Trochodendron aralioides HOM05D003722 ORTHO05D004589 3.4e-141 507.3 933 51.2
Phvul.009G081900 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 1.7e-140 505.0 910 53.0
Potri.018G048700 Populus trichocarpa HOM05D003722 ORTHO05D004589 3.2e-139 500.7 927 48.7
Lalb_Chr23g0267971 Lupinus albus HOM05D003722 ORTHO05D004589 4.2e-139 500.4 925 49.5
PSO135G0299 Papaver somniferum HOM05D003722 ORTHO05D004589 1.2e-138 498.8 927 50.9
PSO724G0454 Papaver somniferum HOM05D003722 ORTHO05D004589 1.4e-137 495.4 925 51.7
MD15G1049900 Malus domestica HOM05D003722 ORTHO05D004589 5.2e-137 493.4 924 50.0
MBI19_g11832_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 3.3e-136 490.7 973 50.3
Oeu036060.1 Olea europaea HOM05D003722 ORTHO05D004589 5.7e-136 490.0 926 49.9
MD08G1071300 Malus domestica HOM05D003722 ORTHO05D004589 1.7e-135 488.4 923 51.8
HanXRQChr05g0135941 Helianthus annuus HOM05D003722 ORTHO05D004589 8.2e-135 486.1 899 51.9
Lj7A221G29 Lonicera japonica HOM05D003722 ORTHO05D004589 1.8e-134 485.0 898 50.8
Aqoxy7G04082 Aquilegia oxysepala HOM05D003722 ORTHO05D004589 2.4e-134 484.6 914 52.2
Nn6g35614 Nelumbo nucifera HOM05D003722 ORTHO05D004589 2.4e-134 484.6 989 49.3
Peaxi162Scf00486g01029 Petunia axillaris HOM05D003722 ORTHO05D004589 2.4e-134 484.6 912 50.7
TWI32G0253 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 3.1e-134 484.2 912 49.8
arahy.Tifrunner.gnm1.ann1.JX1TK4 Arachis hypogaea HOM05D003722 ORTHO05D004589 5.3e-134 483.4 926 51.3
Potri.006G220900 Populus trichocarpa HOM05D003722 ORTHO05D004589 7.0e-134 483.0 929 51.1
Medtr1g015450 Medicago truncatula HOM05D003722 ORTHO05D004589 2.6e-133 481.1 920 50.9
Sc23g0004200 Simmondsia chinensis HOM05D003722 ORTHO05D004589 5.9e-133 479.9 900 52.0
Lj5g0007526 Lotus japonicus HOM05D003722 ORTHO05D004589 1.3e-132 478.8 991 49.3
Manes.16G085600 Manihot esculenta HOM05D003722 ORTHO05D004589 1.7e-132 478.4 929 51.0
FAN27G2597 Fragaria x ananassa HOM05D003722 ORTHO05D004589 4.2e-131 473.8 942 43.6
Sabra18G0046400 Salix brachista HOM05D003722 ORTHO05D004589 4.2e-131 473.8 930 46.0
Eucgr.C03158 Eucalyptus grandis HOM05D003722 ORTHO05D004589 5.5e-131 473.4 899 52.1
FvH4_2g30970 Fragaria vesca HOM05D003722 ORTHO05D004589 2.1e-130 471.5 931 50.4
FAN24G1820 Fragaria x ananassa HOM05D003722 ORTHO05D004589 2.7e-130 471.1 931 50.4
Nitab4.5_0002831g0060 Nicotiana tabacum HOM05D003722 ORTHO05D004589 3.6e-130 470.7 928 49.5
Glyma.17G225800 Glycine max HOM05D003722 ORTHO05D004589 4.7e-130 470.3 923 51.0
Hma1.2p1_0836F.1_g225970 Hydrangea macrophylla HOM05D003722 ORTHO05D004589 5.2e-129 466.8 928 50.8
Glyma.14G098900 Glycine max HOM05D003722 ORTHO05D004589 1.5e-128 465.3 921 50.3
QL02p017002 Quercus lobata HOM05D003722 ORTHO05D004589 1.5e-128 465.3 911 51.4
CsaV3_4G036040 Cucumis sativus L. HOM05D003722 ORTHO05D004589 2.0e-128 464.9 921 50.5
TAR626G0360 Trochodendron aralioides HOM05D003722 ORTHO05D004589 5.7e-128 463.4 965 49.0
Haze_18293 Corylus avellana HOM05D003722 ORTHO05D004589 7.5e-128 463.0 938 48.0
FAN20G0071 Fragaria x ananassa HOM05D003722 ORTHO05D004589 3.7e-127 460.7 930 50.0
Glyma.06G055800 Glycine max HOM05D003722 ORTHO05D004589 3.7e-127 460.7 925 49.0
Gohir.D07G019500 Gossypium hirsutum HOM05D003722 ORTHO05D004589 3.7e-127 460.7 986 48.5
TAR626G0824 Trochodendron aralioides HOM05D003722 ORTHO05D004589 3.7e-127 460.7 965 48.9
VMungo1309G1038 Vigna mungo HOM05D003722 ORTHO05D004589 4.8e-127 460.3 890 52.1
CSS0048906 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 8.2e-127 459.5 910 50.3
TPR.G38933 Trifolium pratense HOM05D003722 ORTHO05D004589 8.2e-127 459.5 913 49.8
Lsat_1_v5_gn_8_70661 Lactuca sativa HOM05D003722 ORTHO05D004589 1.4e-126 458.8 927 46.5
MSTRG.25985 Avicennia marina HOM05D003722 ORTHO05D004589 3.1e-126 457.6 911 50.2
Gohir.A07G019700 Gossypium hirsutum HOM05D003722 ORTHO05D004589 3.1e-126 457.6 986 48.2
DCAR_004379 Daucus carota HOM05D003722 ORTHO05D004589 5.3e-126 456.8 926 50.4
arahy.Tifrunner.gnm1.ann1.G8USHK Arachis hypogaea HOM05D003722 ORTHO05D004589 7.0e-126 456.4 912 50.7
Ciclev10007327m.g Citrus clementina HOM05D003722 ORTHO05D004589 9.1e-126 456.1 984 48.3
Manes.03G053433 Manihot esculenta HOM05D003722 ORTHO05D004589 1.6e-125 455.3 1018 47.4
Nn8g38669 Nelumbo nucifera HOM05D003722 ORTHO05D004589 1.6e-125 455.3 900 51.2
Rhsim03G0063100 Rhododendron simsii HOM05D003722 ORTHO05D004589 1.6e-125 455.3 925 50.3
Ca_13110_v3 Cicer arietinum L. HOM05D003722 ORTHO05D004589 2.0e-125 454.9 913 49.2
Gorai.001G020200 Gossypium raimondii HOM05D003722 ORTHO05D004589 4.5e-125 453.8 986 48.0
VMungo0647G1341 Vigna mungo HOM05D003722 ORTHO05D004589 5.9e-125 453.4 934 48.6
ClCG05G015740 Citrullus lanatus HOM05D003722 ORTHO05D004589 2.9e-124 451.1 922 50.0
Dinv41842 Davidia involucrata HOM05D003722 ORTHO05D004589 3.8e-124 450.7 926 50.5
Migut.E01781 Erythranthe guttata HOM05D003722 ORTHO05D004589 6.5e-124 449.9 924 49.1
COL.COLO4_21138 Corchorus olitorius HOM05D003722 ORTHO05D004589 8.5e-124 449.5 926 49.8
TWI34G0168 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 1.1e-123 449.1 923 49.4
CSS0013734 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 1.9e-123 448.4 929 50.3
Lalb_Chr22g0356231 Lupinus albus HOM05D003722 ORTHO05D004589 3.2e-123 447.6 927 50.1
vmacro07490 Vaccinium macrocarpon HOM05D003722 ORTHO05D004589 4.2e-123 447.2 907 48.6
Thecc.09G063300 Theobroma cacao HOM05D003722 ORTHO05D004589 5.5e-123 446.8 926 50.0
arahy.Tifrunner.gnm1.ann1.V7LPDI Arachis hypogaea HOM05D003722 ORTHO05D004589 2.7e-122 444.5 926 48.6
ECA236G0039 Erigeron canadensis HOM05D003722 ORTHO05D004589 6.1e-122 443.4 920 48.9
Solyc08g061820.3 Solanum lycopersicum HOM05D003722 ORTHO05D004589 6.1e-122 443.4 928 45.3
CDE07G1686 Ceratophyllum demersum HOM05D003722 ORTHO05D004589 1.0e-121 442.6 647 59.7
Migut.A00079 Erythranthe guttata HOM05D003722 ORTHO05D004589 1.0e-121 442.6 923 49.4
Sopen08g017250 Solanum pennellii HOM05D003722 ORTHO05D004589 1.0e-121 442.6 928 45.0
MELO3C016912.2 Cucumis melo HOM05D003722 ORTHO05D004589 1.4e-121 442.2 877 46.8
Sabra06G0170700 Salix brachista HOM05D003722 ORTHO05D004589 1.4e-121 442.2 994 45.0
PGSC0003DMG400018806 Solanum tuberosum HOM05D003722 ORTHO05D004589 1.4e-121 442.2 928 47.1
arahy.Tifrunner.gnm1.ann1.V9GZ7C Arachis hypogaea HOM05D003722 ORTHO05D004589 5.2e-121 440.3 926 50.2
DCAR_001223 Daucus carota HOM05D003722 ORTHO05D004589 8.8e-121 439.5 900 50.2
Duzib187G0791 Durio zibethinus HOM05D003722 ORTHO05D004589 1.5e-120 438.7 991 47.0
CANSAT25G1471 Cannabis sativa HOM05D003722 ORTHO05D004589 3.4e-120 437.6 918 48.7
AagrBONN_evm.TU.Sc2ySwM_117.2463 Anthoceros agrestis HOM05D003722 ORTHO05D004589 9.8e-120 436.0 759 54.8
Sed0000287 Sechium edule HOM05D003722 ORTHO05D004589 1.7e-119 435.3 844 49.2
Glyma.04G055700 Glycine max HOM05D003722 ORTHO05D004589 2.2e-119 434.9 924 47.8
PGR044G0665 Punica granatum HOM05D003722 ORTHO05D004589 1.4e-118 432.2 1038 46.0
HPP92_006154 Vanilla planifolia HOM05D003722 ORTHO05D004589 3.1e-118 431.0 928 48.1
Gohir.D06G083100 Gossypium hirsutum HOM05D003722 ORTHO05D004589 4.1e-118 430.6 892 49.4
Sed0027838 Sechium edule HOM05D003722 ORTHO05D004589 1.2e-117 429.1 926 48.7
SalBow4G2891 Salvia bowleyana HOM05D003722 ORTHO05D004589 2.0e-117 428.3 897 49.6
Actinidia27552 Actinidia chinensis HOM05D003722 ORTHO05D004589 2.7e-117 427.9 930 47.7
SGA_v2.0_scaffold163G37999 Striga asiatica HOM05D003722 ORTHO05D004589 7.7e-117 426.4 917 47.8
C03p86790 Brassica napus HOM05D003722 ORTHO05D004589 3.8e-116 424.1 939 45.5
Lalb_Chr08g0244821 Lupinus albus HOM05D003722 ORTHO05D004589 3.8e-116 424.1 988 43.9
Phvul.001G038700 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 3.8e-116 424.1 933 47.3
Atru.chr7.1848 Acer truncatum HOM05D003722 ORTHO05D004589 1.9e-115 421.8 839 48.3
BcaC01g01002 Brassica carinata HOM05D003722 ORTHO05D004589 5.5e-115 420.2 939 45.5
BolC3t20973H Brassica oleracea HOM05D003722 ORTHO05D004589 5.5e-115 420.2 939 45.5
CAN.G881.1 Capsicum annuum HOM05D003722 ORTHO05D004589 7.2e-115 419.9 675 54.8
BcaB03g12811 Brassica carinata HOM05D003722 ORTHO05D004589 1.2e-114 419.1 897 47.4
EL10Ac2g03782 Beta vulgaris HOM05D003722 ORTHO05D004589 1.6e-114 418.7 989 44.3
BraA03t15228Z Brassica rapa HOM05D003722 ORTHO05D004589 6.1e-114 416.8 909 48.3
AT4G33210 Arabidopsis thaliana HOM05D003722 ORTHO05D004589 1.4e-113 415.6 996 46.3
Carub.0007s0725 Capsella rubella HOM05D003722 ORTHO05D004589 8.9e-113 412.9 997 45.9
SGA_v2.0_scaffold169G38713 Striga asiatica HOM05D003722 ORTHO05D004589 9.8e-112 409.5 917 46.2
HanXRQChr03g0065591 Helianthus annuus HOM05D003722 ORTHO05D004589 1.7e-111 408.7 928 46.6
AUR62009080 Chenopodium quinoa HOM05D003722 ORTHO05D004589 1.1e-110 406.0 931 44.0
Sp7g30950 Schrenkiella parvula HOM05D003722 ORTHO05D004589 1.1e-110 406.0 899 47.9
AUR62020586 Chenopodium quinoa HOM05D003722 ORTHO05D004589 2.0e-109 401.7 921 46.7
Aa31sc290G30 Aethionema arabicum HOM05D003722 ORTHO05D004589 3.5e-109 401.0 908 46.8
Gorai.010G096600 Gossypium raimondii HOM05D003722 ORTHO05D004589 1.0e-108 399.4 849 46.5
Duzib168G1968 Durio zibethinus HOM05D003722 ORTHO05D004589 1.3e-108 399.1 925 43.0
SGA_v2.0_scaffold64G21877 Striga asiatica HOM05D003722 ORTHO05D004589 2.3e-108 398.3 897 46.6
BcaNung02160 Brassica carinata HOM05D003722 ORTHO05D004589 8.6e-108 396.4 909 46.6
BraA08t33724Z Brassica rapa HOM05D003722 ORTHO05D004589 8.6e-108 396.4 897 42.6
THA.LOC104803705 Tarenaya hassleriana HOM05D003722 ORTHO05D004589 9.5e-107 392.9 994 42.7
BolC7t46400H Brassica oleracea HOM05D003722 ORTHO05D004589 1.2e-106 392.5 905 46.7
A01p04970 Brassica napus HOM05D003722 ORTHO05D004589 1.6e-106 392.1 912 47.0
BraA01t00479Z Brassica rapa HOM05D003722 ORTHO05D004589 1.6e-106 392.1 912 47.0
C01p05420 Brassica napus HOM05D003722 ORTHO05D004589 2.8e-106 391.3 912 47.0
BolC1t00522H Brassica oleracea HOM05D003722 ORTHO05D004589 2.8e-106 391.3 912 47.0
CARHR241240 Cardamine hirsuta HOM05D003722 ORTHO05D004589 3.6e-106 391.0 996 45.2
CiPaw.16G068500 Carya illinoinensis HOM05D003722 ORTHO05D004589 3.0e-105 387.9 647 56.1
BcaC09g52132 Brassica carinata HOM05D003722 ORTHO05D004589 4.0e-105 387.5 899 46.9
AL7G18350 Arabidopsis lyrata HOM05D003722 ORTHO05D004589 5.2e-105 387.1 996 45.0
Medtr1g015480 Medicago truncatula HOM05D003722 ORTHO05D004589 3.7e-103 380.9 891 44.2
BolC3t20974H Brassica oleracea HOM05D003722 ORTHO05D004589 3.2e-102 377.9 899 44.2
Thhalv10024312m.g Eutrema salsugineum HOM05D003722 ORTHO05D004589 7.8e-101 373.2 912 46.5
A08p17740 Brassica napus HOM05D003722 ORTHO05D004589 1.7e-100 372.1 897 45.3
Zm00001eb048660 Zea mays HOM05D003722 ORTHO05D004589 1.5e-99 369.0 454 54.6
unitig_748.g8237 Utricularia gibba HOM05D003722 ORTHO05D004589 1.2e-98 365.9 932 47.0
Gohir.A06G081600 Gossypium hirsutum HOM05D003722 ORTHO05D004589 6.2e-98 363.6 779 50.2
Hund19422 Selenicereus undatus HOM05D003722 ORTHO05D004589 4.0e-97 360.9 827 40.5
A08p17750 Brassica napus HOM05D003722 ORTHO05D004589 8.9e-97 359.8 897 42.3
BraA08t33725Z Brassica rapa HOM05D003722 ORTHO05D004589 1.5e-96 359.0 897 42.1
C03p86800 Brassica napus HOM05D003722 ORTHO05D004589 4.9e-95 354.0 899 42.7
TWI39G1239 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 1.6e-93 349.0 835 44.0
Psat6g022880 Pisum sativum HOM05D003722 ORTHO05D004589 1.7e-92 345.5 674 46.0
Zm00001eb223490 Zea mays HOM05D003722 ORTHO05D004589 2.3e-92 345.1 434 53.7
MBI13_g31962_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 6.8e-89 333.6 603 46.6
unitig_4.g30332 Utricularia gibba HOM05D003722 ORTHO05D004589 4.4e-88 330.9 892 38.9
Os10g0396400 Oryza sativa ssp. japonica HOM05D003722 ORTHO05D004589 3.6e-82 311.2 740 50.3
MBI13_g13882_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 1.8e-81 308.9 324 63.6
Cpa.g.sc126.25 Carica papaya HOM05D003722 ORTHO05D004589 2.5e-75 288.5 780 45.8
Cc08_g01170 Coffea canephora HOM05D003722 ORTHO05D004589 4.0e-73 281.2 412 51.2
Sc09g0010110 Simmondsia chinensis HOM05D003722 ORTHO05D004589 1.6e-58 232.6 580 45.0
Actinidia25690 Actinidia chinensis HOM05D003722 ORTHO05D004589 1.8e-57 229.2 744 44.9
Oeu022303.1 Olea europaea HOM05D003722 ORTHO05D004589 1.3e-50 206.5 388 36.1
SHI18847 Sapria himalayana HOM05D000105 ORTHO05D000023 5.8e-48 197.6 608 34.0
Oeu028128.1 Olea europaea HOM05D003722 ORTHO05D004589 3.8e-47 194.9 315 52.1
SalBow1G2799 Salvia bowleyana HOM05D003722 ORTHO05D004589 1.0e-44 186.8 737 45.5
Psat3g079480 Pisum sativum HOM05D003722 ORTHO05D004589 2.3e-36 159.1 149 53.7
Cc08_g01160 Coffea canephora HOM05D003722 ORTHO05D004589 1.7e-34 152.9 364 37.9
Actinidia25691 Actinidia chinensis HOM05D003722 ORTHO05D004589 3.2e-30 138.7 134 51.5
Gohir.A06G081780 Gossypium hirsutum HOM05D003722 ORTHO05D004589 5.0e-23 114.8 110 54.5
Ah.11g044300 Amaranthus hybridus HOM05D003722 ORTHO05D004589 1.0e-20 107.1 323 27.2
VMungo0720G2633 Vigna mungo HOM05D003722 ORTHO05D004589 2.2e-18 99.4 87 56.3
Cpa.g.sc126.26 Carica papaya HOM05D003722 ORTHO05D004589 8.2e-18 97.4 90 56.7
Mapoly0101s0054 Marchantia polymorpha HOM05D003722 ORTHO05D004589 2.0e-16 92.8 61 70.5
Psat5g213240 Pisum sativum HOM05D003722 ORTHO05D004589 3.8e-15 88.6 86 52.3
ECA236G4568 Erigeron canadensis HOM05D000007 ORTHO05D000039 3.0e-12 79.0 69 58.0
Cre12.g525600 Chlamydomonas reinhardtii HOM05D003722 ORTHO05D004589 5.7e-11 74.7 461 26.7
CANSAT35G0079 Cannabis sativa HOM05D000710 ORTHO05D000336 3.8e-07 62.0 230 27.4
VMungo0251G0605 Vigna mungo HOM05D003722 ORTHO05D001926 1.5e-06 60.1 70 44.3
THA.LOC104812336 Tarenaya hassleriana HOM05D000710 ORTHO05D000336 7.2e-06 57.8 183 29.5


User provided reference genes

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