Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c5_23880 Physcomitrium patens HOM05D002799 ORTHO05D007076 1.2e-280 969.1 465 100.0
AagrBONN_evm.TU.Sc2ySwM_368.1885 Anthoceros agrestis HOM05D002799 ORTHO05D007076 3.6e-104 382.9 327 58.1
Pp3c3_18900 Physcomitrium patens HOM05D002799 ORTHO05D007076 3.6e-104 382.9 288 61.5
Mapoly0041s0072 Marchantia polymorpha HOM05D002799 ORTHO05D007076 7.7e-99 365.2 318 58.5
CBR_g26239 Chara braunii HOM05D002799 ORTHO05D007076 5.0e-90 335.9 303 54.1
ATR0829G228 Amborella trichopoda HOM05D002799 ORTHO05D007076 2.0e-86 323.9 298 54.4
Gohir.A09G055000 Gossypium hirsutum HOM05D002799 ORTHO05D007076 3.7e-85 319.7 420 44.5
GSVIVG01024449001 Vitis vinifera HOM05D002799 ORTHO05D007076 8.3e-85 318.5 284 54.9
Eucgr.K00095 Eucalyptus grandis HOM05D002799 ORTHO05D007076 1.1e-84 318.2 367 48.5
CiPaw.05G237100 Carya illinoinensis HOM05D002799 ORTHO05D007076 1.4e-84 317.8 334 50.9
QL09p025824 Quercus lobata HOM05D002799 ORTHO05D007076 1.8e-84 317.4 281 57.7
MBI04_g21139_MAGBIO Magnolia biondii HOM05D002799 ORTHO05D007076 3.1e-84 316.6 270 56.7
RcHm_v2.0_Chr1g0383851 Rosa chinensis HOM05D002799 ORTHO05D007076 4.1e-84 316.2 303 52.1
MD01G1233700 Malus domestica HOM05D002799 ORTHO05D007076 5.4e-84 315.8 293 54.9
Sed0006194 Sechium edule HOM05D002799 ORTHO05D007076 7.0e-84 315.5 291 55.7
COL.COLO4_24619 Corchorus olitorius HOM05D002799 ORTHO05D007076 1.2e-83 314.7 280 55.7
CsaV3_4G004510 Cucumis sativus L. HOM05D002799 ORTHO05D007076 1.2e-83 314.7 280 56.8
Actinidia08737 Actinidia chinensis HOM05D002799 ORTHO05D007076 1.6e-83 314.3 272 56.6
Cc03_g15080 Coffea canephora HOM05D002799 ORTHO05D007076 2.0e-83 313.9 281 55.5
TAR374G0973 Trochodendron aralioides HOM05D002799 ORTHO05D007076 2.0e-83 313.9 280 55.7
CSS0010295 Camellia sinensis var. sinensis HOM05D002799 ORTHO05D007076 2.7e-83 313.5 280 56.8
Dinv17267 Davidia involucrata HOM05D002799 ORTHO05D007076 2.7e-83 313.5 270 55.9
FAN03G1078 Fragaria x ananassa HOM05D002799 ORTHO05D007076 3.5e-83 313.2 281 54.1
FAN10G3482 Fragaria x ananassa HOM05D002799 ORTHO05D007076 3.5e-83 313.2 281 54.1
Solyc03g006460.4 Solanum lycopersicum HOM05D002799 ORTHO05D007076 3.5e-83 313.2 270 56.7
Sopen03g002460 Solanum pennellii HOM05D002799 ORTHO05D007076 3.5e-83 313.2 270 56.7
arahy.Tifrunner.gnm1.ann1.IZ2599 Arachis hypogaea HOM05D002799 ORTHO05D007076 4.5e-83 312.8 320 52.5
arahy.Tifrunner.gnm1.ann1.ZMX436 Arachis hypogaea HOM05D002799 ORTHO05D007076 4.5e-83 312.8 320 52.5
Lj3g0008833 Lotus japonicus HOM05D002799 ORTHO05D007076 4.5e-83 312.8 280 55.4
MSTRG.11401 Avicennia marina HOM05D002799 ORTHO05D007076 5.9e-83 312.4 280 57.9
BcaB08g34494 Brassica carinata HOM05D002799 ORTHO05D007076 5.9e-83 312.4 317 51.1
Ciclev10001355m.g Citrus clementina HOM05D002799 ORTHO05D007076 5.9e-83 312.4 280 55.7
FAN10G0267 Fragaria x ananassa HOM05D002799 ORTHO05D007076 5.9e-83 312.4 281 53.7
Atru.chr12.2008 Acer truncatum HOM05D002799 ORTHO05D007076 7.7e-83 312.0 280 54.6
Gohir.D09G053900 Gossypium hirsutum HOM05D002799 ORTHO05D007076 7.7e-83 312.0 421 43.9
Gorai.006G053300 Gossypium raimondii HOM05D002799 ORTHO05D007076 7.7e-83 312.0 422 44.3
Thecc.08G172500 Theobroma cacao HOM05D002799 ORTHO05D007076 7.7e-83 312.0 270 57.0
Aqoxy3G02040 Aquilegia oxysepala HOM05D002799 ORTHO05D007076 1.0e-82 311.6 298 53.0
Manes.08G164400 Manihot esculenta HOM05D002799 ORTHO05D007076 1.0e-82 311.6 280 56.1
VMungo1127G2112 Vigna mungo HOM05D002799 ORTHO05D007076 1.0e-82 311.6 280 55.7
FvH4_7g33590 Fragaria vesca HOM05D002799 ORTHO05D007076 1.7e-82 310.8 302 52.3
vmacro06500 Vaccinium macrocarpon HOM05D002799 ORTHO05D007076 1.7e-82 310.8 280 56.1
Ah.13g072670 Amaranthus hybridus HOM05D002799 ORTHO05D007076 2.9e-82 310.1 272 55.9
SalBow5G5430 Salvia bowleyana HOM05D002799 ORTHO05D007076 5.0e-82 309.3 294 54.1
Ca_29855_v3 Cicer arietinum L. HOM05D002799 ORTHO05D007076 6.5e-82 308.9 280 56.4
FAN01G1859 Fragaria x ananassa HOM05D002799 ORTHO05D007076 6.5e-82 308.9 270 54.8
PSO782G0547 Papaver somniferum HOM05D002799 ORTHO05D007076 8.5e-82 308.5 276 55.4
A03p44540 Brassica napus HOM05D002799 ORTHO05D007076 1.1e-81 308.1 311 52.7
BraA03t13587Z Brassica rapa HOM05D002799 ORTHO05D007076 1.1e-81 308.1 311 52.7
Phvul.011G021500 Phaseolus vulgaris HOM05D002799 ORTHO05D007076 1.1e-81 308.1 280 54.6
Medtr4g077510 Medicago truncatula HOM05D002799 ORTHO05D007076 1.5e-81 307.8 297 53.9
Ca_04931_v3 Cicer arietinum L. HOM05D002799 ORTHO05D007076 1.9e-81 307.4 270 57.0
Prupe.2G323900 Prunus persica HOM05D002799 ORTHO05D007076 1.9e-81 307.4 320 51.2
TWI34G0554 Tripterygium wilfordii HOM05D002799 ORTHO05D007076 1.9e-81 307.4 382 47.6
BcaC01g03181 Brassica carinata HOM05D002799 ORTHO05D007076 3.2e-81 306.6 321 49.8
C03p55340 Brassica napus HOM05D002799 ORTHO05D007076 3.2e-81 306.6 321 49.8
BolC3t17806H Brassica oleracea HOM05D002799 ORTHO05D007076 3.2e-81 306.6 321 49.8
Sp3g23560 Schrenkiella parvula HOM05D002799 ORTHO05D007076 3.2e-81 306.6 282 55.0
AUR62028151 Chenopodium quinoa HOM05D002799 ORTHO05D007076 4.2e-81 306.2 270 55.6
CANSAT21G1863 Cannabis sativa HOM05D002799 ORTHO05D007076 7.2e-81 305.4 259 57.9
Duzib211G0014 Durio zibethinus HOM05D002799 ORTHO05D007076 7.2e-81 305.4 280 53.9
AL3G42700 Arabidopsis lyrata HOM05D002799 ORTHO05D007076 1.2e-80 304.7 280 54.6
CAN.G289.47 Capsicum annuum HOM05D002799 ORTHO05D007076 1.2e-80 304.7 322 50.6
Potri.015G079500 Populus trichocarpa HOM05D002799 ORTHO05D007076 1.2e-80 304.7 331 50.5
CDE01G0680 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 2.1e-80 303.9 279 55.2
PGSC0003DMG400012810 Solanum tuberosum HOM05D002799 ORTHO05D007076 2.1e-80 303.9 283 53.7
Thhalv10002559m.g Eutrema salsugineum HOM05D002799 ORTHO05D007076 2.7e-80 303.5 327 50.2
Carub.0003s2662 Capsella rubella HOM05D002799 ORTHO05D007076 6.1e-80 302.4 319 49.8
Glyma.12G019100 Glycine max HOM05D002799 ORTHO05D007076 6.1e-80 302.4 281 53.7
Lalb_Chr03g0024441 Lupinus albus HOM05D002799 ORTHO05D007076 6.1e-80 302.4 280 54.3
AT2G04940 Arabidopsis thaliana HOM05D002799 ORTHO05D007076 8.0e-80 302.0 342 48.5
EL10Ac3g05098 Beta vulgaris HOM05D002799 ORTHO05D007076 8.0e-80 302.0 328 49.1
ECA233G3743 Erigeron canadensis HOM05D002799 ORTHO05D007076 1.4e-79 301.2 265 56.2
CARHR102970 Cardamine hirsuta HOM05D002799 ORTHO05D007076 1.8e-79 300.8 306 50.7
PSO063G7569 Papaver somniferum HOM05D002799 ORTHO05D007076 1.8e-79 300.8 322 49.1
Aa31LG3G2760 Aethionema arabicum HOM05D002799 ORTHO05D007076 2.3e-79 300.4 316 50.0
Migut.I00118 Erythranthe guttata HOM05D002799 ORTHO05D007076 2.3e-79 300.4 308 51.9
Zm00001eb430250 Zea mays HOM05D002799 ORTHO05D007076 1.2e-78 298.1 304 51.6
HPP92_015127 Vanilla planifolia HOM05D002799 ORTHO05D007076 1.5e-78 297.7 327 49.2
THA.LOC104815357 Tarenaya hassleriana HOM05D002799 ORTHO05D007076 2.6e-78 297.0 355 47.0
Hma1.2p1_0758F.1_g213600 Hydrangea macrophylla HOM05D002799 ORTHO05D007076 3.4e-78 296.6 270 55.6
Nn1g02009 Nelumbo nucifera HOM05D002799 ORTHO05D007076 4.4e-78 296.2 280 54.3
PGR004G1694 Punica granatum HOM05D002799 ORTHO05D007076 9.8e-78 295.0 281 52.7
Lsat_1_v5_gn_8_3761 Lactuca sativa HOM05D002799 ORTHO05D007076 1.7e-77 294.3 269 55.0
DCAR_009002 Daucus carota HOM05D002799 ORTHO05D007076 1.2e-75 288.1 306 51.3
HanXRQChr04g0105251 Helianthus annuus HOM05D002799 ORTHO05D007076 2.7e-75 287.0 272 52.6
Lj1C1032G6 Lonicera japonica HOM05D002799 ORTHO05D007076 6.6e-74 282.3 278 52.2
Os04g0599400 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D007076 1.9e-73 280.8 318 47.2
MD07G1305800 Malus domestica HOM05D002799 ORTHO05D007076 3.3e-73 280.0 293 49.5
Os02g0238500 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D007076 4.3e-73 279.6 266 52.6
MELO3C017614.2 Cucumis melo HOM05D002799 ORTHO05D007076 7.3e-73 278.9 321 48.0
SMO196G0267 Selaginella moellendorffii HOM05D002799 ORTHO05D007076 9.5e-73 278.5 224 57.6
Oeu014983.2 Olea europaea HOM05D002799 ORTHO05D007076 1.4e-71 274.6 314 47.8
AUR62005914 Chenopodium quinoa HOM05D002799 ORTHO05D007076 4.4e-70 269.6 270 52.2
ClCG07G017310 Citrullus lanatus HOM05D002799 ORTHO05D007076 9.8e-70 268.5 280 51.1
Hund09770 Selenicereus undatus HOM05D002799 ORTHO05D007076 9.5e-65 251.9 353 44.2
Solyc03g006452.1 Solanum lycopersicum HOM05D002799 ORTHO05D007076 3.6e-64 250.0 244 52.5
Cpa.g.sc67.53 Carica papaya HOM05D002799 ORTHO05D007076 4.0e-63 246.5 222 53.6
unitig_62.g23564 Utricularia gibba HOM05D002799 ORTHO05D007076 1.2e-62 245.0 285 48.8
Sc13g0010800 Simmondsia chinensis HOM05D002799 ORTHO05D007076 6.4e-61 239.2 180 59.4
Lj2A621G40 Lonicera japonica HOM05D002799 ORTHO05D007076 9.2e-60 235.3 181 58.6
Psat7g171360 Pisum sativum HOM05D002799 ORTHO05D007076 2.3e-58 230.7 281 45.9
Actinidia34299 Actinidia chinensis HOM05D002799 ORTHO05D007076 2.0e-54 217.6 216 50.5
Zm00001eb071960 Zea mays HOM05D002799 ORTHO05D007076 1.8e-47 194.5 127 66.1
Lj3A801T16 Lonicera japonica HOM05D002799 ORTHO05D007076 1.2e-43 181.8 268 38.1
PRCOL_00006278 Prasinoderma coloniale HOM05D002799 ORTHO05D007076 1.7e-42 177.9 274 40.1
Cfa015896 Carpinus fangiana HOM05D002799 ORTHO05D007076 1.8e-39 167.9 282 40.4
Cre06.g267850 Chlamydomonas reinhardtii HOM05D002799 ORTHO05D007076 8.9e-39 165.6 197 44.2
FvH4_7g33592 Fragaria vesca HOM05D002799 ORTHO05D007076 1.2e-38 165.2 159 53.5
FvH4_7g33593 Fragaria vesca HOM05D002799 ORTHO05D007076 2.1e-32 144.4 111 57.7
Sabra15G0103700 Salix brachista HOM05D002799 ORTHO05D007076 4.8e-32 143.3 241 36.1
SEGI_10035 Sequoiadendron giganteum HOM05D002799 ORTHO05D007076 1.3e-29 135.2 105 57.1
Peaxi162Scf00195g01110 Petunia axillaris HOM05D002799 ORTHO05D007076 1.1e-28 132.1 141 52.5
Hma1.2p1_0758F.1_g213590 Hydrangea macrophylla HOM05D002799 ORTHO05D007076 2.4e-28 131.0 160 45.6
Sabra15G0103800 Salix brachista HOM05D002799 ORTHO05D007076 3.2e-28 130.6 133 51.9
Haze_00592 Corylus avellana HOM05D002799 ORTHO05D007076 3.1e-23 114.0 118 50.0
Cfa023729 Carpinus fangiana HOM05D002799 ORTHO05D007076 2.4e-20 104.4 324 26.5
Zm00001eb315690 Zea mays HOM05D002799 ORTHO05D007076 7.1e-20 102.8 56 73.2
Nitab4.5_0000701g0060 Nicotiana tabacum HOM05D002799 ORTHO05D007076 4.6e-19 100.1 213 35.7
Nitab4.5_0000793g0030 Nicotiana tabacum HOM05D002799 ORTHO05D007076 1.5e-17 95.1 212 34.9
TPR.G19958 Trifolium pratense HOM05D002799 ORTHO05D007076 5.6e-17 93.2 62 62.9
HanXRQChr15g0477781 Helianthus annuus HOM05D002799 ORTHO05D007076 2.5e-12 77.8 125 40.0
FAN10G3554 Fragaria x ananassa HOM05D012649 ORTHO05D007076 4.3e-09 67.0 48 58.3
Actinidia04566 Actinidia chinensis HOM05D002799 ORTHO05D007076 5.7e-09 66.6 177 29.4
Lj2C621T3 Lonicera japonica HOM05D002799 ORTHO05D007076 2.8e-08 64.3 100 43.0
Haze_00593 Corylus avellana HOM05D002799 ORTHO05D007076 8.2e-08 62.8 97 44.3
Pp3c5_23890 Physcomitrium patens HOM05D002799 ORTHO05D007076 1.1e-07 62.4 34 76.5
Nitab4.5_0000793g0020 Nicotiana tabacum HOM05D002799 ORTHO05D007076 1.4e-07 62.0 55 50.9
SEGI_38885 Sequoiadendron giganteum HOM05D002799 ORTHO05D007076 1.4e-07 62.0 109 37.6
TPR.G21490 Trifolium pratense HOM05D002799 ORTHO05D007076 1.8e-07 61.6 102 45.1
QL03p008982 Quercus lobata HOM05D000009 ORTHO05D000008 3.1e-07 60.8 73 46.6
Nitab4.5_0000701g0050 Nicotiana tabacum HOM05D002799 ORTHO05D007076 3.4e-06 57.4 107 36.4
QL03p009165 Quercus lobata HOM05D000009 ORTHO05D000008 4.5e-06 57.0 49 55.1


User provided reference genes

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