Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c5_23860 Physcomitrium patens HOM05D004327 ORTHO05D005032 2.3e-274 948.3 499 100.0
Pp3c16_10790 Physcomitrium patens HOM05D004327 ORTHO05D005032 6.9e-146 521.5 446 66.1
Pp3c12_10100 Physcomitrium patens HOM05D004327 ORTHO05D005032 7.4e-132 474.9 367 70.8
Pp3c3_22200 Physcomitrium patens HOM05D004327 ORTHO05D005032 5.5e-127 458.8 362 68.5
Pp3c10_16450 Physcomitrium patens HOM05D004327 ORTHO05D005032 2.4e-122 443.4 325 72.6
AagrBONN_evm.TU.Sc2ySwM_117.785 Anthoceros agrestis HOM05D004327 ORTHO05D005032 5.5e-119 432.2 447 57.5
Medtr4g127970 Medicago truncatula HOM05D004327 ORTHO05D005032 9.4e-119 431.4 349 66.2
Lalb_Chr07g0180501 Lupinus albus HOM05D004327 ORTHO05D005032 3.6e-118 429.5 341 67.4
Glyma.17G062900 Glycine max HOM05D004327 ORTHO05D005032 4.7e-118 429.1 347 65.1
Dinv42719 Davidia involucrata HOM05D004327 ORTHO05D005032 1.8e-117 427.2 361 64.0
Dinv43382 Davidia involucrata HOM05D004327 ORTHO05D005032 1.8e-117 427.2 361 64.0
Glyma.13G096600 Glycine max HOM05D004327 ORTHO05D005032 1.8e-117 427.2 347 64.8
Cpa.g.sc233.7 Carica papaya HOM05D004327 ORTHO05D005032 5.1e-117 425.6 341 66.6
CiPaw.07G192500 Carya illinoinensis HOM05D004327 ORTHO05D005032 1.1e-116 424.5 362 63.5
Phvul.003G145300 Phaseolus vulgaris HOM05D004327 ORTHO05D005032 1.5e-116 424.1 341 65.7
VMungo1215G1888 Vigna mungo HOM05D004327 ORTHO05D005032 1.5e-116 424.1 347 64.6
ATR0580G352 Amborella trichopoda HOM05D004327 ORTHO05D005032 2.0e-116 423.7 361 64.0
Atru.chr7.613 Acer truncatum HOM05D004327 ORTHO05D005032 3.3e-116 422.9 343 66.5
Prupe.1G085300 Prunus persica HOM05D004327 ORTHO05D005032 3.3e-116 422.9 361 62.6
TAR343G0001 Trochodendron aralioides HOM05D004327 ORTHO05D005032 4.4e-116 422.5 358 64.0
CsaV3_2G008420 Cucumis sativus L. HOM05D004327 ORTHO05D005032 9.7e-116 421.4 361 62.6
Lj4g0017259 Lotus japonicus HOM05D004327 ORTHO05D005032 3.7e-115 419.5 349 65.0
Hma1.2p1_1025F.1_g249340 Hydrangea macrophylla HOM05D004327 ORTHO05D005032 6.3e-115 418.7 361 63.4
Eucgr.C00153 Eucalyptus grandis HOM05D004327 ORTHO05D005032 8.2e-115 418.3 349 63.3
DCAR_017971 Daucus carota HOM05D004327 ORTHO05D005032 1.4e-114 417.5 337 66.8
MSTRG.26218 Avicennia marina HOM05D004327 ORTHO05D005032 1.8e-114 417.2 358 63.7
arahy.Tifrunner.gnm1.ann1.UF0NDT Arachis hypogaea HOM05D004327 ORTHO05D005032 3.1e-114 416.4 349 63.9
arahy.Tifrunner.gnm1.ann1.IHC8NS Arachis hypogaea HOM05D004327 ORTHO05D005032 5.3e-114 415.6 349 63.9
GSVIVG01029211001 Vitis vinifera HOM05D004327 ORTHO05D005032 7.0e-114 415.2 361 62.3
CANSAT11G1121 Cannabis sativa HOM05D004327 ORTHO05D005032 9.1e-114 414.8 361 61.5
ClCG11G012140 Citrullus lanatus HOM05D004327 ORTHO05D005032 9.1e-114 414.8 396 58.6
Manes.14G154300 Manihot esculenta HOM05D004327 ORTHO05D005032 9.1e-114 414.8 361 62.0
vmacro06012 Vaccinium macrocarpon HOM05D004327 ORTHO05D005032 9.1e-114 414.8 341 65.4
Sed0007507 Sechium edule HOM05D004327 ORTHO05D005032 1.2e-113 414.5 344 64.2
Psat4g169000 Pisum sativum HOM05D004327 ORTHO05D005032 1.5e-113 414.1 338 65.1
MD13G1253000 Malus domestica HOM05D004327 ORTHO05D005032 2.6e-113 413.3 372 61.6
MD16G1257500 Malus domestica HOM05D004327 ORTHO05D005032 2.6e-113 413.3 384 58.9
QL02p097831 Quercus lobata HOM05D004327 ORTHO05D005032 3.5e-113 412.9 361 61.2
TPR.G5449 Trifolium pratense HOM05D004327 ORTHO05D005032 3.5e-113 412.9 349 63.9
CSS0007595 Camellia sinensis var. sinensis HOM05D004327 ORTHO05D005032 4.5e-113 412.5 361 61.8
Potri.018G092000 Populus trichocarpa HOM05D004327 ORTHO05D005032 5.9e-113 412.1 361 62.0
Mapoly0023s0050 Marchantia polymorpha HOM05D004327 ORTHO05D005032 7.7e-113 411.8 421 58.2
SMO352G0043 Selaginella moellendorffii HOM05D004327 ORTHO05D005032 1.1e-111 407.9 356 65.7
Ca_21229_v3 Cicer arietinum L. HOM05D004327 ORTHO05D005032 1.9e-111 407.1 341 65.1
Cc06_g13210 Coffea canephora HOM05D004327 ORTHO05D005032 2.5e-111 406.8 339 64.0
PSO063G6085 Papaver somniferum HOM05D004327 ORTHO05D005032 2.5e-111 406.8 364 62.1
Migut.K00240 Erythranthe guttata HOM05D004327 ORTHO05D005032 9.4e-111 404.8 364 61.3
RcHm_v2.0_Chr4g0402371 Rosa chinensis HOM05D004327 ORTHO05D005032 9.4e-111 404.8 361 60.9
Thecc.09G176900 Theobroma cacao HOM05D004327 ORTHO05D005032 1.2e-110 404.4 341 63.6
Gohir.D08G093800 Gossypium hirsutum HOM05D004327 ORTHO05D005032 6.1e-110 402.1 345 62.9
Nn8g40460 Nelumbo nucifera HOM05D004327 ORTHO05D005032 1.0e-109 401.4 361 60.7
Gohir.A08G084200 Gossypium hirsutum HOM05D004327 ORTHO05D005032 1.8e-109 400.6 345 62.6
COL.COLO4_37716 Corchorus olitorius HOM05D004327 ORTHO05D005032 2.3e-109 400.2 339 63.4
ECA240G0157 Erigeron canadensis HOM05D004327 ORTHO05D005032 2.3e-109 400.2 340 64.1
AL3G53050 Arabidopsis lyrata HOM05D004327 ORTHO05D005032 4.0e-109 399.4 341 64.2
Ciclev10008675m.g Citrus clementina HOM05D004327 ORTHO05D005032 4.0e-109 399.4 349 63.0
Rhsim03G0264600 Rhododendron simsii HOM05D004327 ORTHO05D005032 5.2e-109 399.1 348 62.4
Duzib150G0132 Durio zibethinus HOM05D004327 ORTHO05D005032 7.5e-108 395.2 360 60.0
PSO170G3199 Papaver somniferum HOM05D004327 ORTHO05D005032 7.5e-108 395.2 349 62.2
Gorai.004G099500 Gossypium raimondii HOM05D004327 ORTHO05D005032 9.7e-108 394.8 370 59.5
Migut.J01485 Erythranthe guttata HOM05D004327 ORTHO05D005032 2.2e-107 393.7 340 62.4
MSTRG.6222 Avicennia marina HOM05D004327 ORTHO05D005032 4.8e-107 392.5 340 62.6
AL8G33390 Arabidopsis lyrata HOM05D004327 ORTHO05D005032 6.3e-107 392.1 341 61.9
CARHR109440 Cardamine hirsuta HOM05D004327 ORTHO05D005032 6.3e-107 392.1 337 64.1
Duzib168G0099 Durio zibethinus HOM05D004327 ORTHO05D005032 1.1e-106 391.3 358 59.8
FvH4_4g08170 Fragaria vesca HOM05D004327 ORTHO05D005032 1.4e-106 391.0 357 60.8
FAN22G1646 Fragaria x ananassa HOM05D004327 ORTHO05D005032 3.1e-106 389.8 357 60.5
CDE04G3746 Ceratophyllum demersum HOM05D004327 ORTHO05D005032 2.0e-105 387.1 361 59.0
HanXRQChr11g0322421 Helianthus annuus HOM05D004327 ORTHO05D005032 2.6e-105 386.7 346 61.6
BolC9t54328H Brassica oleracea HOM05D004327 ORTHO05D005032 3.5e-105 386.3 340 63.2
AT5G57410 Arabidopsis thaliana HOM05D004327 ORTHO05D005032 1.0e-104 384.8 341 61.3
BolC3t13942H Brassica oleracea HOM05D004327 ORTHO05D005032 1.7e-104 384.0 341 60.7
Carub.0008s1793 Capsella rubella HOM05D004327 ORTHO05D005032 1.7e-104 384.0 341 60.4
BcaB01g04457 Brassica carinata HOM05D004327 ORTHO05D005032 2.9e-104 383.3 341 60.7
BraA03t10592Z Brassica rapa HOM05D004327 ORTHO05D005032 2.9e-104 383.3 341 60.7
Sabra18G0079100 Salix brachista HOM05D004327 ORTHO05D005032 2.9e-104 383.3 361 60.1
A03p12840 Brassica napus HOM05D004327 ORTHO05D005032 3.8e-104 382.9 349 59.6
C03p15000 Brassica napus HOM05D004327 ORTHO05D005032 5.0e-104 382.5 347 59.7
ECA236G3505 Erigeron canadensis HOM05D004327 ORTHO05D005032 1.1e-103 381.3 349 59.6
Sp6g19130 Schrenkiella parvula HOM05D004327 ORTHO05D005032 1.1e-103 381.3 341 60.4
HPP92_019412 Vanilla planifolia HOM05D004327 ORTHO05D005032 1.5e-103 380.9 364 58.8
Thhalv10013843m.g Eutrema salsugineum HOM05D004327 ORTHO05D005032 2.5e-103 380.2 341 60.1
SGA_v2.0_scaffold66G22446 Striga asiatica HOM05D004327 ORTHO05D005032 2.5e-103 380.2 375 57.9
CARHR271210 Cardamine hirsuta HOM05D004327 ORTHO05D005032 3.2e-103 379.8 341 60.4
Solyc07g019530.3 Solanum lycopersicum HOM05D004327 ORTHO05D005032 3.2e-103 379.8 337 61.4
Sopen07g008040 Solanum pennellii HOM05D004327 ORTHO05D005032 3.2e-103 379.8 337 61.4
PGR142G4100 Punica granatum HOM05D004327 ORTHO05D005032 9.4e-103 378.3 349 59.3
Sed0007415 Sechium edule HOM05D004327 ORTHO05D005032 1.6e-102 377.5 300 66.0
Thhalv10022742m.g Eutrema salsugineum HOM05D004327 ORTHO05D005032 2.1e-102 377.1 341 62.5
Peaxi162Scf00231g00726 Petunia axillaris HOM05D004327 ORTHO05D005032 6.1e-102 375.6 337 60.5
BcaC01g06496 Brassica carinata HOM05D004327 ORTHO05D005032 1.0e-101 374.8 341 59.8
Sp3g32340 Schrenkiella parvula HOM05D004327 ORTHO05D005032 6.8e-101 372.1 341 61.6
Sc14g0001280 Simmondsia chinensis HOM05D004327 ORTHO05D005032 6.8e-101 372.1 329 62.0
THA.LOC104803493 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 2.0e-100 370.5 338 61.2
Aqoxy7G03046 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 2.6e-100 370.2 350 58.6
THA.LOC104811786 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 2.6e-100 370.2 359 57.1
Aa31LG3G13300 Aethionema arabicum HOM05D004327 ORTHO05D005032 4.4e-100 369.4 358 57.8
CAN.G210.1 Capsicum annuum HOM05D004327 ORTHO05D005032 4.4e-100 369.4 326 61.7
CDE07G0842 Ceratophyllum demersum HOM05D004327 ORTHO05D005032 4.4e-100 369.4 350 58.9
SalBow6G1961 Salvia bowleyana HOM05D004327 ORTHO05D005032 4.4e-100 369.4 385 56.9
SHI02909 Sapria himalayana HOM05D004327 ORTHO05D005032 7.5e-100 368.6 345 59.4
MBI14_g17374_MAGBIO Magnolia biondii HOM05D004327 ORTHO05D005032 9.8e-100 368.2 361 57.6
A09p12090 Brassica napus HOM05D004327 ORTHO05D005032 2.2e-99 367.1 359 58.8
THA.LOC104813521 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 2.2e-99 367.1 363 57.0
BraA09t36853Z Brassica rapa HOM05D004327 ORTHO05D005032 6.3e-99 365.5 340 60.6
Zm00001eb178290 Zea mays HOM05D004327 ORTHO05D005032 8.3e-99 365.2 334 60.5
Carub.0003s3311 Capsella rubella HOM05D004327 ORTHO05D005032 1.8e-98 364.0 341 59.5
Lsat_1_v5_gn_7_54620 Lactuca sativa HOM05D004327 ORTHO05D005032 3.1e-98 363.2 335 61.2
Os08g0242900 Oryza sativa ssp. japonica HOM05D004327 ORTHO05D005032 5.4e-98 362.5 354 57.6
BcaB07g31641 Brassica carinata HOM05D004327 ORTHO05D005032 7.0e-98 362.1 341 60.4
BcaC04g22882 Brassica carinata HOM05D004327 ORTHO05D005032 7.0e-98 362.1 340 60.3
C09p14270 Brassica napus HOM05D004327 ORTHO05D005032 7.0e-98 362.1 340 60.3
Lalb_Chr13g0300201 Lupinus albus HOM05D004327 ORTHO05D005032 7.0e-98 362.1 332 59.6
CBR_g34541 Chara braunii HOM05D004327 ORTHO05D005032 4.5e-97 359.4 337 59.6
Dinv41244 Davidia involucrata HOM05D004327 ORTHO05D005032 7.7e-97 358.6 294 67.3
Hund09030 Selenicereus undatus HOM05D004327 ORTHO05D005032 1.0e-96 358.2 361 56.0
EL10Ac8g18287 Beta vulgaris HOM05D004327 ORTHO05D005032 1.3e-96 357.8 337 59.1
SMO137G0257 Selaginella moellendorffii HOM05D004327 ORTHO05D005032 3.8e-96 356.3 343 58.9
Aa31LG8G15970 Aethionema arabicum HOM05D004327 ORTHO05D005032 6.5e-96 355.5 342 59.9
Actinidia17317 Actinidia chinensis HOM05D004327 ORTHO05D005032 3.6e-94 349.7 340 60.0
unitig_0.g2679 Utricularia gibba HOM05D004327 ORTHO05D005032 4.7e-94 349.4 348 58.3
AUR62033220 Chenopodium quinoa HOM05D004327 ORTHO05D005032 9.8e-92 341.7 334 57.8
CiPaw.08G036000 Carya illinoinensis HOM05D004327 ORTHO05D005032 4.9e-91 339.3 368 54.1
Lj9A24G29 Lonicera japonica HOM05D004327 ORTHO05D005032 4.7e-86 322.8 267 64.8
CBR_g4121 Chara braunii HOM05D004327 ORTHO05D005032 1.2e-84 318.2 348 53.7
AUR62021302 Chenopodium quinoa HOM05D004327 ORTHO05D005032 2.0e-84 317.4 335 55.5
FAN17G0468 Fragaria x ananassa HOM05D004327 ORTHO05D005032 2.6e-84 317.0 364 50.8
MELO3C004022.2 Cucumis melo HOM05D004327 ORTHO05D005032 1.4e-82 311.2 303 61.1
TAR636G3612 Trochodendron aralioides HOM05D000809 ORTHO05D001196 1.4e-82 311.2 292 60.6
Actinidia38633 Actinidia chinensis HOM05D004327 ORTHO05D005032 1.7e-80 304.3 278 61.9
Haze_22092 Corylus avellana HOM05D004327 ORTHO05D005032 2.3e-77 293.9 247 63.2
Nitab4.5_0004572g0010 Nicotiana tabacum HOM05D004327 ORTHO05D005032 4.0e-77 293.1 353 50.1
AT2G18876 Arabidopsis thaliana HOM05D004327 ORTHO05D005032 3.4e-76 290.0 266 63.2
Actinidia27011 Actinidia chinensis HOM05D004327 ORTHO05D005032 1.2e-70 271.6 287 56.8
Nitab4.5_0005945g0010 Nicotiana tabacum HOM05D004327 ORTHO05D005032 2.8e-70 270.4 337 48.4
Duzib170G0255 Durio zibethinus HOM05D004327 ORTHO05D005032 2.2e-67 260.8 214 65.9
BcaB01g04461 Brassica carinata HOM05D004327 ORTHO05D005032 3.6e-62 243.4 289 48.1
Actinidia02748 Actinidia chinensis HOM05D004327 ORTHO05D005032 9.9e-60 235.3 235 61.3
BcaC01g06490 Brassica carinata HOM05D004327 ORTHO05D005032 2.8e-46 190.7 170 61.2
Aqoxy4G01695 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 3.5e-41 173.7 124 73.4
BcaC01g06489 Brassica carinata HOM05D004327 ORTHO05D005032 7.6e-28 129.4 122 53.3
Pp3c26_7180 Physcomitrium patens HOM05D004327 ORTHO05D005032 2.2e-27 127.9 123 51.2
SEGI_01506 Sequoiadendron giganteum HOM05D004327 ORTHO05D005032 3.5e-25 120.6 107 65.4
Oeu042171.1 Olea europaea HOM05D004327 ORTHO05D005032 6.3e-22 109.8 115 53.9
Haze_22093 Corylus avellana HOM05D004327 ORTHO05D005032 1.4e-21 108.6 127 52.0
FAN17G0800 Fragaria x ananassa HOM05D004327 ORTHO05D005032 2.4e-21 107.8 113 56.6
HanXRQChr09g0245491 Helianthus annuus HOM05D000502 ORTHO05D005032 4.1e-21 107.1 86 59.3
HanXRQChr08g0229701 Helianthus annuus HOM05D000502 ORTHO05D005032 1.2e-20 105.5 70 67.1
HanXRQChr13g0404041 Helianthus annuus HOM05D000502 ORTHO05D005032 1.7e-19 101.7 76 64.5
SEGI_38031 Sequoiadendron giganteum HOM05D004327 ORTHO05D005032 1.4e-18 98.6 83 66.3
Lj9A25T20 Lonicera japonica HOM05D004327 ORTHO05D005032 9.7e-15 85.9 97 51.5
Pp3c25_9090 Physcomitrium patens HOM05D004327 ORTHO05D005032 9.7e-15 85.9 97 54.6
Aqoxy7G03035 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 4.8e-14 83.6 125 46.4
BcaB05g22345 Brassica carinata HOM05D004327 ORTHO05D005032 2.9e-11 74.3 93 45.2
Pp3c25_9100 Physcomitrium patens HOM05D004327 ORTHO05D005032 5.5e-10 70.1 91 47.3
PRCOL_00002192 Prasinoderma coloniale HOM05D004327 ORTHO05D005032 9.4e-10 69.3 274 26.6
MCO09G810 Micromonas commoda HOM05D004327 ORTHO05D005032 1.5e-07 62.0 166 29.5
Oeu003512.1 Olea europaea HOM05D004327 ORTHO05D005032 2.0e-07 61.6 42 66.7
Glyma.09G140000 Glycine max HOM05D004327 ORTHO05D005032 4.4e-07 60.5 67 44.8
BraA02t05921Z Brassica rapa HOM05D004327 ORTHO05D005032 2.8e-06 57.8 57 52.6
Pp3c17_9610 Physcomitrium patens HOM05D004327 ORTHO05D005032 8.2e-06 56.2 99 38.4


User provided reference genes

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