Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c5_23700 Physcomitrium patens HOM05D003379 ORTHO05D003862 1.9e-279 965.3 533 100.0
MBI07_g41898_MAGBIO Magnolia biondii HOM05D003379 ORTHO05D003862 1.6e-23 115.2 543 28.7
ATR0582G197 Amborella trichopoda HOM05D003379 ORTHO05D003862 6.9e-19 99.8 377 29.2
ClCG05G012630 Citrullus lanatus HOM05D003379 ORTHO05D003862 1.5e-18 98.6 398 29.1
Cpa.g.sc70.68 Carica papaya HOM05D003379 ORTHO05D003862 2.2e-17 94.7 371 28.6
FAN07G0868 Fragaria x ananassa HOM05D003379 ORTHO05D003862 2.2e-17 94.7 353 30.3
Cfa007165 Carpinus fangiana HOM05D003379 ORTHO05D003862 5.0e-17 93.6 370 28.9
CDE05G0540 Ceratophyllum demersum HOM05D003379 ORTHO05D003862 5.0e-17 93.6 371 28.8
Prupe.1G216200 Prunus persica HOM05D003379 ORTHO05D003862 8.4e-17 92.8 280 31.8
Mapoly0001s0546 Marchantia polymorpha HOM05D003379 ORTHO05D003862 1.1e-16 92.4 481 27.2
Potri.002G238100 Populus trichocarpa HOM05D003379 ORTHO05D003862 1.4e-16 92.0 365 27.1
vmacro18379 Vaccinium macrocarpon HOM05D003379 ORTHO05D003862 1.4e-16 92.0 247 34.4
Lalb_Chr14g0364121 Lupinus albus HOM05D003379 ORTHO05D003862 1.9e-16 91.7 386 28.0
Sabra02G0181500 Salix brachista HOM05D003379 ORTHO05D003862 1.9e-16 91.7 367 27.2
Atru.chr6.2693 Acer truncatum HOM05D003379 ORTHO05D003862 4.2e-16 90.5 404 26.7
MD09G1002700 Malus domestica HOM05D003379 ORTHO05D003862 4.2e-16 90.5 368 28.5
AUR62037825 Chenopodium quinoa HOM05D003379 ORTHO05D003862 5.5e-16 90.1 371 28.6
Dinv19304 Davidia involucrata HOM05D003379 ORTHO05D003862 5.5e-16 90.1 533 27.2
Rhsim08G0039200 Rhododendron simsii HOM05D003379 ORTHO05D003862 5.5e-16 90.1 303 29.0
Haze_14949 Corylus avellana HOM05D003379 ORTHO05D003862 1.2e-15 89.0 369 27.9
Gohir.A07G232700 Gossypium hirsutum HOM05D003379 ORTHO05D003862 1.6e-15 88.6 368 30.7
MD17G1006900 Malus domestica HOM05D003379 ORTHO05D003862 1.6e-15 88.6 367 26.7
QL02p069539 Quercus lobata HOM05D003379 ORTHO05D003862 1.6e-15 88.6 377 27.9
Sed0002814 Sechium edule HOM05D003379 ORTHO05D003862 1.6e-15 88.6 375 28.5
Gohir.D07G239900 Gossypium hirsutum HOM05D003379 ORTHO05D003862 3.5e-15 87.4 372 30.1
CsaV3_3G027780 Cucumis sativus L. HOM05D003379 ORTHO05D003862 4.6e-15 87.0 373 29.8
Gorai.001G276100 Gossypium raimondii HOM05D003379 ORTHO05D003862 4.6e-15 87.0 372 30.1
PGR142G1656 Punica granatum HOM05D003379 ORTHO05D003862 4.6e-15 87.0 539 25.8
AUR62017428 Chenopodium quinoa HOM05D003379 ORTHO05D003862 6.1e-15 86.7 416 26.7
FAN17G1075 Fragaria x ananassa HOM05D003379 ORTHO05D003862 6.1e-15 86.7 353 28.6
Duzib132G1102 Durio zibethinus HOM05D003379 ORTHO05D003862 7.9e-15 86.3 378 27.5
RcHm_v2.0_Chr4g0428951 Rosa chinensis HOM05D003379 ORTHO05D003862 7.9e-15 86.3 301 32.2
Sc03g0005220 Simmondsia chinensis HOM05D003379 ORTHO05D003862 7.9e-15 86.3 309 27.5
TAR475G0001 Trochodendron aralioides HOM05D003379 ORTHO05D003862 7.9e-15 86.3 528 26.3
QL03p049546 Quercus lobata HOM05D003379 ORTHO05D003862 1.8e-14 85.1 374 30.7
MELO3C014781.2 Cucumis melo HOM05D003379 ORTHO05D003862 2.3e-14 84.7 345 29.9
Sed0021165 Sechium edule HOM05D003379 ORTHO05D003862 2.3e-14 84.7 542 25.3
COL.COLO4_13374 Corchorus olitorius HOM05D003379 ORTHO05D003862 3.0e-14 84.3 541 25.3
Dinv01473 Davidia involucrata HOM05D003379 ORTHO05D003862 3.9e-14 84.0 535 26.0
Nitab4.5_0005424g0010 Nicotiana tabacum HOM05D003379 ORTHO05D003862 3.9e-14 84.0 368 27.2
TWI32G0366 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 5.1e-14 83.6 531 26.0
Prupe.3G313500 Prunus persica HOM05D003379 ORTHO05D003862 6.7e-14 83.2 372 27.4
EL10Ac6g13403 Beta vulgaris HOM05D003379 ORTHO05D003862 8.7e-14 82.8 288 30.2
TAR374G0325 Trochodendron aralioides HOM05D003379 ORTHO05D003862 8.7e-14 82.8 533 25.9
Glyma.19G103400 Glycine max HOM05D003379 ORTHO05D003862 1.5e-13 82.0 237 28.7
Medtr7g084070 Medicago truncatula HOM05D003379 ORTHO05D003862 1.5e-13 82.0 252 32.1
Thecc.04G047800 Theobroma cacao HOM05D003379 ORTHO05D003862 1.5e-13 82.0 366 28.4
CiPaw.04G001500 Carya illinoinensis HOM05D003379 ORTHO05D003862 1.9e-13 81.6 364 28.0
Duzib187G1855 Durio zibethinus HOM05D003379 ORTHO05D003862 2.5e-13 81.3 360 27.5
Eucgr.I02446 Eucalyptus grandis HOM05D003379 ORTHO05D003862 2.5e-13 81.3 348 28.2
FAN12G1414 Fragaria x ananassa HOM05D003379 ORTHO05D003862 3.3e-13 80.9 372 27.4
FvH4_4g22730 Fragaria vesca HOM05D003379 ORTHO05D003862 5.7e-13 80.1 354 27.1
Gohir.D02G175200 Gossypium hirsutum HOM05D003379 ORTHO05D003862 5.7e-13 80.1 268 31.3
CiPaw.06G109000 Carya illinoinensis HOM05D003379 ORTHO05D003862 7.4e-13 79.7 533 25.5
Gorai.005G196800 Gossypium raimondii HOM05D003379 ORTHO05D003862 7.4e-13 79.7 268 31.0
CDE05G1535 Ceratophyllum demersum HOM05D003379 ORTHO05D003862 9.7e-13 79.3 373 27.9
Zm00001eb084870 Zea mays HOM05D003379 ORTHO05D003862 9.7e-13 79.3 266 30.5
Nn4g22138 Nelumbo nucifera HOM05D003379 ORTHO05D003862 1.6e-12 78.6 309 29.1
C09p63160 Brassica napus HOM05D003379 ORTHO05D003862 3.7e-12 77.4 374 27.8
Phvul.001G084300 Phaseolus vulgaris HOM05D003379 ORTHO05D003862 4.8e-12 77.0 251 29.5
Potri.014G143800 Populus trichocarpa HOM05D003379 ORTHO05D003862 4.8e-12 77.0 378 24.6
HPP92_027984 Vanilla planifolia HOM05D003379 ORTHO05D003862 4.8e-12 77.0 256 30.5
Ah.03g136390 Amaranthus hybridus HOM05D003379 ORTHO05D003862 8.2e-12 76.3 376 29.3
Ciclev10015333m.g Citrus clementina HOM05D003379 ORTHO05D003862 8.2e-12 76.3 533 24.6
Manes.11G076800 Manihot esculenta HOM05D003379 ORTHO05D003862 8.2e-12 76.3 530 24.2
THA.LOC104825464 Tarenaya hassleriana HOM05D003379 ORTHO05D003862 8.2e-12 76.3 370 27.6
MD13G1129900 Malus domestica HOM05D003379 ORTHO05D003862 1.1e-11 75.9 329 28.9
SMO117G0242 Selaginella moellendorffii HOM05D002493 ORTHO05D003175 1.4e-11 75.5 325 28.0
BolC9t59151H Brassica oleracea HOM05D003379 ORTHO05D003862 1.8e-11 75.1 374 27.5
Potri.003G163100 Populus trichocarpa HOM05D003379 ORTHO05D003862 2.4e-11 74.7 550 24.4
Haze_12496 Corylus avellana HOM05D003379 ORTHO05D003862 3.1e-11 74.3 372 27.7
Migut.E00693 Erythranthe guttata HOM05D003379 ORTHO05D003862 4.1e-11 73.9 363 27.3
VMungo1383G3656 Vigna mungo HOM05D003379 ORTHO05D003862 5.3e-11 73.6 323 25.7
Ca_08145_v3 Cicer arietinum L. HOM05D003379 ORTHO05D003862 6.9e-11 73.2 379 26.6
Lj1g0011786 Lotus japonicus HOM05D003379 ORTHO05D003862 6.9e-11 73.2 389 26.2
TWI75G1860 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 6.9e-11 73.2 272 30.9
Dinv25618 Davidia involucrata HOM05D003379 ORTHO05D003862 9.0e-11 72.8 470 25.3
Sc17g0006750 Simmondsia chinensis HOM05D003379 ORTHO05D003862 9.0e-11 72.8 246 31.3
Atru.chr12.1405 Acer truncatum HOM05D003379 ORTHO05D003862 1.2e-10 72.4 540 24.3
BraA10t44509Z Brassica rapa HOM05D003379 ORTHO05D003862 1.2e-10 72.4 303 30.0
COL.COLO4_21771 Corchorus olitorius HOM05D003379 ORTHO05D003862 1.2e-10 72.4 530 25.3
Psat3g093320 Pisum sativum HOM05D003379 ORTHO05D003862 1.2e-10 72.4 373 26.8
SGA_v2.0_scaffold306G48013 Striga asiatica HOM05D003379 ORTHO05D003862 1.2e-10 72.4 539 25.0
Ciclev10005064m.g Citrus clementina HOM05D003379 ORTHO05D003862 1.5e-10 72.0 311 28.6
Sabra03G0118600 Salix brachista HOM05D003379 ORTHO05D003862 1.5e-10 72.0 545 24.8
A10p24430 Brassica napus HOM05D003379 ORTHO05D003862 2.0e-10 71.6 303 29.4
Zm00001eb421370 Zea mays HOM05D003379 ORTHO05D003862 2.6e-10 71.2 265 29.4
Cc07_g01280 Coffea canephora HOM05D003379 ORTHO05D003862 3.4e-10 70.9 386 27.5
MSTRG.2062 Avicennia marina HOM05D003379 ORTHO05D003862 4.5e-10 70.5 532 26.9
SalBow6G5409 Salvia bowleyana HOM05D003379 ORTHO05D003862 4.5e-10 70.5 358 28.2
Actinidia36245 Actinidia chinensis HOM05D003379 ORTHO05D003862 5.9e-10 70.1 372 26.1
Sp6g30030 Schrenkiella parvula HOM05D003379 ORTHO05D003862 7.7e-10 69.7 289 29.1
Actinidia22119 Actinidia chinensis HOM05D003379 ORTHO05D003862 1.3e-09 68.9 377 26.5
Actinidia30590 Actinidia chinensis HOM05D003379 ORTHO05D003862 2.2e-09 68.2 364 28.0
Aa31LG11G15410 Aethionema arabicum HOM05D003379 ORTHO05D003862 2.2e-09 68.2 428 25.7
Nitab4.5_0002116g0010 Nicotiana tabacum HOM05D003379 ORTHO05D003862 2.2e-09 68.2 317 27.1
Glyma.16G047900 Glycine max HOM05D003379 ORTHO05D003862 2.9e-09 67.8 380 26.1
Hma1.2p1_0787F.1_g217850 Hydrangea macrophylla HOM05D003379 ORTHO05D003862 2.9e-09 67.8 382 26.7
Hund04187 Selenicereus undatus HOM05D003379 ORTHO05D003862 2.9e-09 67.8 370 25.1
AagrBONN_evm.TU.Sc2ySwM_369.605 Anthoceros agrestis HOM05D003379 ORTHO05D003862 3.8e-09 67.4 377 24.7
arahy.Tifrunner.gnm1.ann1.JRYW6U Arachis hypogaea HOM05D003379 ORTHO05D003862 3.8e-09 67.4 232 30.2
arahy.Tifrunner.gnm1.ann1.M1DIX9 Arachis hypogaea HOM05D003379 ORTHO05D003862 3.8e-09 67.4 231 30.7
THA.LOC104825281 Tarenaya hassleriana HOM05D003379 ORTHO05D003862 5.0e-09 67.0 371 26.1
Nitab4.5_0001409g0240 Nicotiana tabacum HOM05D000225 ORTHO05D001595 6.5e-09 66.6 143 34.3
AL6G24630 Arabidopsis lyrata HOM05D003379 ORTHO05D003862 8.5e-09 66.2 291 28.2
CAN.G7.8 Capsicum annuum HOM05D003379 ORTHO05D003862 8.5e-09 66.2 269 28.6
Cfa009444 Carpinus fangiana HOM05D003379 ORTHO05D003862 8.5e-09 66.2 245 30.2
Hund23589 Selenicereus undatus HOM05D003379 ORTHO05D003862 1.1e-08 65.9 379 25.3
Thhalv10013725m.g Eutrema salsugineum HOM05D003379 ORTHO05D003862 1.4e-08 65.5 240 27.9
Peaxi162Scf00171g00621 Petunia axillaris HOM05D003379 ORTHO05D003862 1.4e-08 65.5 247 30.0
AUR62014693 Chenopodium quinoa HOM05D003379 ORTHO05D003862 2.5e-08 64.7 304 27.6
Duzib147G0361 Durio zibethinus HOM05D003379 ORTHO05D003862 2.5e-08 64.7 448 23.7
Manes.08G101800 Manihot esculenta HOM05D003379 ORTHO05D003862 2.5e-08 64.7 377 26.5
Carub.0006s1216 Capsella rubella HOM05D003379 ORTHO05D003862 3.2e-08 64.3 332 26.5
Nitab4.5_0007209g0030 Nicotiana tabacum HOM05D000225 ORTHO05D001595 3.2e-08 64.3 197 30.5
DCAR_002970 Daucus carota HOM05D003379 ORTHO05D003862 4.2e-08 63.9 245 27.8
EL10Ac8g20553 Beta vulgaris HOM05D003379 ORTHO05D003862 7.2e-08 63.2 309 27.8
PGSC0003DMG400004243 Solanum tuberosum HOM05D003379 ORTHO05D003862 7.2e-08 63.2 271 29.5
FvH4_6g54290 Fragaria vesca HOM05D003379 ORTHO05D003862 9.4e-08 62.8 528 23.3
Lj7A617T72 Lonicera japonica HOM05D003379 ORTHO05D003862 9.4e-08 62.8 539 26.7
AT5G13970 Arabidopsis thaliana HOM05D003379 ORTHO05D003862 1.2e-07 62.4 296 27.4
FAN09G0861 Fragaria x ananassa HOM05D003379 ORTHO05D003862 1.2e-07 62.4 528 23.3
HanXRQChr12g0384731 Helianthus annuus HOM05D003379 ORTHO05D003862 1.2e-07 62.4 245 29.4
Lsat_1_v5_gn_0_41321 Lactuca sativa HOM05D003379 ORTHO05D003862 1.2e-07 62.4 371 25.3
HanXRQChr17g0550921 Helianthus annuus HOM05D003379 ORTHO05D003862 1.6e-07 62.0 196 29.6
BcaC04g19123 Brassica carinata HOM05D003379 ORTHO05D003862 2.1e-07 61.6 286 28.0
FAN14G1380 Fragaria x ananassa HOM05D003379 ORTHO05D003862 2.1e-07 61.6 527 23.1
Oeu027918.1 Olea europaea HOM05D003379 ORTHO05D003862 2.7e-07 61.2 285 27.0
Rhsim12G0017700 Rhododendron simsii HOM05D003379 ORTHO05D003862 2.7e-07 61.2 374 25.9
CBR_g34048 Chara braunii HOM05D003379 ORTHO05D003862 3.6e-07 60.8 195 29.7
Gohir.A03G152100 Gossypium hirsutum HOM05D003379 ORTHO05D003862 4.6e-07 60.5 268 28.0
Solyc02g091940.3 Solanum lycopersicum HOM05D003379 ORTHO05D003862 4.6e-07 60.5 249 26.5
PGSC0003DMG400021424 Solanum tuberosum HOM05D003379 ORTHO05D003862 1.4e-06 58.9 102 37.3
Carub.0006s1148 Capsella rubella HOM05D003379 ORTHO05D003862 1.8e-06 58.5 248 27.4
Ah.09g236390 Amaranthus hybridus HOM05D003379 ORTHO05D003862 2.3e-06 58.2 538 22.7
Sopen04g017060 Solanum pennellii HOM05D003379 ORTHO05D003862 2.3e-06 58.2 268 28.7
C09p63750 Brassica napus HOM05D003379 ORTHO05D003862 3.0e-06 57.8 286 27.6
Lalb_Chr22g0359971 Lupinus albus HOM05D003379 ORTHO05D003862 3.0e-06 57.8 336 24.4
Manes.09G187602 Manihot esculenta HOM05D003379 ORTHO05D003862 3.0e-06 57.8 247 28.7
Sopen02g036510 Solanum pennellii HOM05D003379 ORTHO05D003862 3.0e-06 57.8 249 25.7
FAN05G5138 Fragaria x ananassa HOM05D003379 ORTHO05D003862 3.9e-06 57.4 533 22.5
PSO478G4908 Papaver somniferum HOM05D003379 ORTHO05D003862 3.9e-06 57.4 370 25.7
A10p24890 Brassica napus HOM05D003379 ORTHO05D003862 6.7e-06 56.6 291 28.9
TWI36G1473 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 8.8e-06 56.2 371 27.2


User provided reference genes

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