Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c5_22720 Physcomitrium patens HOM05D005798 ORTHO05D007269 6.5e-224 780.4 391 100.0
AagrBONN_evm.TU.Sc2ySwM_344.2100 Anthoceros agrestis HOM05D005798 ORTHO05D007269 7.2e-98 361.7 391 48.6
AUR62031252 Chenopodium quinoa HOM05D005798 ORTHO05D007269 1.0e-96 357.8 391 46.3
SEGI_02869 Sequoiadendron giganteum HOM05D005798 ORTHO05D007269 1.3e-96 357.5 394 46.4
CiPaw.13G020800 Carya illinoinensis HOM05D005798 ORTHO05D007269 1.9e-95 353.6 391 45.3
Ciclev10020482m.g Citrus clementina HOM05D005798 ORTHO05D007269 5.7e-95 352.1 390 45.1
Hund17139 Selenicereus undatus HOM05D005798 ORTHO05D007269 1.3e-94 350.9 389 45.0
CANSAT21G0894 Cannabis sativa HOM05D005798 ORTHO05D007269 1.6e-94 350.5 389 45.0
QL04p025438 Quercus lobata HOM05D005798 ORTHO05D007269 1.6e-94 350.5 390 44.4
AUR62027448 Chenopodium quinoa HOM05D005798 ORTHO05D007269 1.1e-93 347.8 391 45.5
Mapoly0001s0452 Marchantia polymorpha HOM05D005798 ORTHO05D007269 5.3e-93 345.5 402 46.5
CSS0042045 Camellia sinensis var. sinensis HOM05D005798 ORTHO05D007269 1.5e-92 344.0 389 45.2
EL10Ac8g19272 Beta vulgaris HOM05D005798 ORTHO05D007269 2.0e-92 343.6 390 44.9
ClCG05G002770 Citrullus lanatus HOM05D005798 ORTHO05D007269 1.3e-91 340.9 392 43.6
Glyma.04G128400 Glycine max HOM05D005798 ORTHO05D007269 2.9e-91 339.7 383 43.1
PGR004G1878 Punica granatum HOM05D005798 ORTHO05D007269 2.9e-91 339.7 389 43.2
Cc02_g25760 Coffea canephora HOM05D005798 ORTHO05D007269 3.8e-91 339.3 390 43.1
Lj1g0019008 Lotus japonicus HOM05D005798 ORTHO05D007269 8.5e-91 338.2 389 42.7
Glyma.06G310400 Glycine max HOM05D005798 ORTHO05D007269 1.1e-90 337.8 381 43.3
PGR004G0434 Punica granatum HOM05D005798 ORTHO05D007269 1.1e-90 337.8 389 42.9
Phvul.005G016200 Phaseolus vulgaris HOM05D005798 ORTHO05D007269 7.2e-90 335.1 389 41.6
MELO3C006251.2 Cucumis melo HOM05D005798 ORTHO05D007269 2.1e-89 333.6 389 42.2
Medtr0103s0100 Medicago truncatula HOM05D005798 ORTHO05D007269 2.1e-89 333.6 389 41.4
MD02G1227400 Malus domestica HOM05D005798 ORTHO05D007269 2.7e-89 333.2 391 44.2
arahy.Tifrunner.gnm1.ann1.1MA0KJ Arachis hypogaea HOM05D005798 ORTHO05D007269 4.6e-89 332.4 389 42.4
Duzib128G1323 Durio zibethinus HOM05D005798 ORTHO05D007269 4.6e-89 332.4 390 44.1
Lalb_Chr19g0126311 Lupinus albus HOM05D005798 ORTHO05D007269 7.9e-89 331.6 389 42.7
vmacro21093 Vaccinium macrocarpon HOM05D005798 ORTHO05D007269 1.0e-88 331.3 392 43.9
MSTRG.20650 Avicennia marina HOM05D005798 ORTHO05D007269 1.4e-88 330.9 390 42.8
Sed0012756 Sechium edule HOM05D005798 ORTHO05D007269 1.4e-88 330.9 389 42.9
Prupe.2G112300 Prunus persica HOM05D005798 ORTHO05D007269 1.8e-88 330.5 391 44.5
VMungo1080G0989 Vigna mungo HOM05D005798 ORTHO05D007269 1.8e-88 330.5 392 41.8
arahy.Tifrunner.gnm1.ann1.6FN2NF Arachis hypogaea HOM05D005798 ORTHO05D007269 3.0e-88 329.7 389 42.4
CsaV3_3G010280 Cucumis sativus L. HOM05D005798 ORTHO05D007269 3.9e-88 329.3 389 42.2
FAN26G0835 Fragaria x ananassa HOM05D005798 ORTHO05D007269 3.9e-88 329.3 390 43.6
Psat3g172680 Pisum sativum HOM05D005798 ORTHO05D007269 3.9e-88 329.3 389 40.1
MD07G1086000 Malus domestica HOM05D005798 ORTHO05D007269 5.1e-88 328.9 391 43.2
Sc26g0001830 Simmondsia chinensis HOM05D005798 ORTHO05D007269 8.8e-88 328.2 389 42.7
TWI59G0898 Tripterygium wilfordii HOM05D005798 ORTHO05D007269 8.8e-88 328.2 389 42.7
FvH4_1g25731 Fragaria vesca HOM05D005798 ORTHO05D007269 1.5e-87 327.4 390 43.6
FAN23G2651 Fragaria x ananassa HOM05D005798 ORTHO05D007269 2.0e-87 327.0 390 43.6
Manes.05G060100 Manihot esculenta HOM05D005798 ORTHO05D007269 2.0e-87 327.0 393 42.7
Nitab4.5_0013532g0010 Nicotiana tabacum HOM05D005798 ORTHO05D007269 2.0e-87 327.0 389 42.9
RcHm_v2.0_Chr1g0343251 Rosa chinensis HOM05D005798 ORTHO05D007269 5.7e-87 325.5 392 43.6
Atru.chr5.24 Acer truncatum HOM05D005798 ORTHO05D007269 7.4e-87 325.1 393 43.5
Atru.chr5.52 Acer truncatum HOM05D005798 ORTHO05D007269 7.4e-87 325.1 391 43.7
Nitab4.5_0009219g0010 Nicotiana tabacum HOM05D005798 ORTHO05D007269 7.4e-87 325.1 389 42.7
Thecc.10G001400 Theobroma cacao HOM05D005798 ORTHO05D007269 7.4e-87 325.1 393 43.0
Ca_03850_v3 Cicer arietinum L. HOM05D005798 ORTHO05D007269 9.7e-87 324.7 390 41.0
Peaxi162Scf01124g00121 Petunia axillaris HOM05D005798 ORTHO05D007269 2.8e-86 323.2 389 42.7
FAN28G0191 Fragaria x ananassa HOM05D005798 ORTHO05D007269 4.8e-86 322.4 390 43.1
Gohir.D10G254600 Gossypium hirsutum HOM05D005798 ORTHO05D007269 4.8e-86 322.4 389 44.2
Gorai.011G295600 Gossypium raimondii HOM05D005798 ORTHO05D007269 4.8e-86 322.4 389 44.0
MBI05_g22048_MAGBIO Magnolia biondii HOM05D005798 ORTHO05D007269 4.8e-86 322.4 389 43.4
Solyc01g088390.3 Solanum lycopersicum HOM05D005798 ORTHO05D007269 8.2e-86 321.6 389 42.4
PGSC0003DMG400001703 Solanum tuberosum HOM05D005798 ORTHO05D007269 8.2e-86 321.6 389 42.7
CAN.G1480.2 Capsicum annuum HOM05D005798 ORTHO05D007269 1.1e-85 321.2 389 42.9
Gohir.A10G242600 Gossypium hirsutum HOM05D005798 ORTHO05D007269 1.1e-85 321.2 389 43.2
Sabra16G0226600 Salix brachista HOM05D005798 ORTHO05D007269 4.1e-85 319.3 390 42.1
Sopen01g035220 Solanum pennellii HOM05D005798 ORTHO05D007269 6.9e-85 318.5 389 42.2
Os05g0119600 Oryza sativa ssp. japonica HOM05D005798 ORTHO05D007269 9.1e-85 318.2 378 43.7
PSO017G1219 Papaver somniferum HOM05D005798 ORTHO05D007269 1.2e-84 317.8 392 41.6
Oeu024375.1 Olea europaea HOM05D005798 ORTHO05D007269 1.5e-84 317.4 380 41.8
Oeu024376.1 Olea europaea HOM05D005798 ORTHO05D007269 1.5e-84 317.4 380 41.8
Potri.001G346900 Populus trichocarpa HOM05D005798 ORTHO05D007269 5.9e-84 315.5 390 41.5
PSO782G4885 Papaver somniferum HOM05D005798 ORTHO05D007269 7.7e-84 315.1 392 41.1
TPR.G30814 Trifolium pratense HOM05D005798 ORTHO05D007269 1.7e-83 313.9 348 42.8
HPP92_011679 Vanilla planifolia HOM05D005798 ORTHO05D007269 6.5e-83 312.0 392 43.4
Migut.B01472 Erythranthe guttata HOM05D005798 ORTHO05D007269 1.1e-82 311.2 390 41.5
BcaB02g08835 Brassica carinata HOM05D005798 ORTHO05D007269 3.2e-82 309.7 389 41.1
Eucgr.D01150 Eucalyptus grandis HOM05D005798 ORTHO05D007269 3.2e-82 309.7 390 41.8
PSO063G7295 Papaver somniferum HOM05D005798 ORTHO05D007269 3.2e-82 309.7 402 41.0
ECA234G4178 Erigeron canadensis HOM05D005798 ORTHO05D007269 5.5e-82 308.9 368 41.8
HanXRQChr16g0519531 Helianthus annuus HOM05D005798 ORTHO05D007269 3.6e-81 306.2 389 39.6
Nn2g10726 Nelumbo nucifera HOM05D005798 ORTHO05D007269 4.7e-81 305.8 390 40.0
THA.LOC104817171 Tarenaya hassleriana HOM05D005798 ORTHO05D007269 1.0e-80 304.7 395 42.3
Zm00001eb112030 Zea mays HOM05D005798 ORTHO05D007269 3.9e-80 302.8 386 41.2
BraA05t19450Z Brassica rapa HOM05D005798 ORTHO05D007269 5.7e-79 298.9 392 40.6
BcaC02g12292 Brassica carinata HOM05D005798 ORTHO05D007269 9.7e-79 298.1 391 39.9
C04p05550 Brassica napus HOM05D005798 ORTHO05D007269 9.7e-79 298.1 391 39.9
AL4G43620 Arabidopsis lyrata HOM05D005798 ORTHO05D007269 1.3e-78 297.7 394 40.6
Sp4g26670 Schrenkiella parvula HOM05D005798 ORTHO05D007269 2.8e-78 296.6 392 40.1
Aa31LG1G26140 Aethionema arabicum HOM05D005798 ORTHO05D007269 3.7e-78 296.2 392 40.6
BolC4t22185H Brassica oleracea HOM05D005798 ORTHO05D007269 6.3e-78 295.4 390 39.5
A05p04740 Brassica napus HOM05D005798 ORTHO05D007269 8.2e-78 295.0 392 39.8
AT2G44580 Arabidopsis thaliana HOM05D005798 ORTHO05D007269 2.0e-76 290.4 395 40.0
Ah.14g086050 Amaranthus hybridus HOM05D005798 ORTHO05D007269 3.5e-76 289.7 392 40.3
Thhalv10001723m.g Eutrema salsugineum HOM05D005798 ORTHO05D007269 5.9e-76 288.9 370 41.4
unitig_52.g17377 Utricularia gibba HOM05D005798 ORTHO05D007269 1.3e-75 287.7 396 38.1
ATR0585G014 Amborella trichopoda HOM05D005798 ORTHO05D007269 1.7e-75 287.3 393 40.5
CARHR139800 Cardamine hirsuta HOM05D005798 ORTHO05D007269 2.7e-73 280.0 376 39.9
Carub.0004s2713 Capsella rubella HOM05D005798 ORTHO05D007269 8.0e-73 278.5 396 37.4
CDE06G2636 Ceratophyllum demersum HOM05D005798 ORTHO05D007269 1.0e-72 278.1 355 42.5
COL.COLO4_19318 Corchorus olitorius HOM05D005798 ORTHO05D007269 4.4e-71 272.7 320 45.0
Actinidia33294 Actinidia chinensis HOM05D005798 ORTHO05D007269 2.0e-68 263.8 356 39.9
Nn1g00612 Nelumbo nucifera HOM05D005798 ORTHO05D007269 2.0e-68 263.8 278 45.3
Lj7C553T5 Lonicera japonica HOM05D005798 ORTHO05D007269 1.6e-65 254.2 389 37.0
SGA_v2.0_scaffold17G08178 Striga asiatica HOM05D005798 ORTHO05D007269 1.2e-63 248.1 353 36.8
Cpa.g.sc3387.1 Carica papaya HOM05D005798 ORTHO05D007269 6.1e-57 225.7 248 43.5
Rhsim01G0145000 Rhododendron simsii HOM05D005798 ORTHO05D007269 4.9e-54 216.1 380 35.0
Dinv43575 Davidia involucrata HOM05D005798 ORTHO05D007269 5.0e-51 206.1 252 43.3
CBR_g39622 Chara braunii HOM05D000017 ORTHO05D000013 2.5e-50 203.8 426 31.5
Cre16.g684155 Chlamydomonas reinhardtii HOM05D005798 ORTHO05D007269 3.4e-47 193.4 415 33.5
TAR375G0847 Trochodendron aralioides HOM05D005798 ORTHO05D007269 4.9e-46 189.5 253 41.1
GSVIVG01018417001 Vitis vinifera HOM05D005798 ORTHO05D007269 7.0e-45 185.7 195 43.6
Lsat_1_v5_gn_4_46040 Lactuca sativa HOM05D005798 ORTHO05D007269 3.9e-43 179.9 195 42.6
Actinidia21608 Actinidia chinensis HOM05D005798 ORTHO05D007269 1.8e-40 171.0 165 46.1
PRCOL_00005399 Prasinoderma coloniale HOM05D005798 ORTHO05D007269 7.8e-36 155.6 380 31.8
Nn3g19112 Nelumbo nucifera HOM05D005798 ORTHO05D007269 5.0e-35 152.9 252 33.3
Prupe.2G112400 Prunus persica HOM05D005798 ORTHO05D007269 2.5e-34 150.6 202 38.6
Nn3g19416 Nelumbo nucifera HOM05D005798 ORTHO05D007269 7.5e-31 139.0 164 40.2
Nn1g07358 Nelumbo nucifera HOM05D005798 ORTHO05D007269 3.2e-29 133.7 191 38.2
Nn1g07357 Nelumbo nucifera HOM05D005798 ORTHO05D007269 1.5e-26 124.8 132 40.9
Haze_02923 Corylus avellana HOM05D005798 ORTHO05D007269 4.3e-26 123.2 184 40.2
Dinv43574 Davidia involucrata HOM05D005798 ORTHO05D007269 4.3e-26 123.2 109 49.5
MCO12G177 Micromonas commoda HOM05D005798 ORTHO05D007269 2.8e-25 120.6 481 26.4
Peaxi162Scf00417g00029 Petunia axillaris HOM05D005798 ORTHO05D007269 1.1e-24 118.6 239 28.0
Atru.chr5.133 Acer truncatum HOM05D005798 ORTHO05D007269 3.1e-24 117.1 171 39.8
HanXRQChr12g0366931 Helianthus annuus HOM05D005798 ORTHO05D007269 4.0e-24 116.7 246 30.1
CAN.G195.32 Capsicum annuum HOM05D005798 ORTHO05D007269 8.4e-22 109.0 163 36.8
Atru.chr5.134 Acer truncatum HOM05D005798 ORTHO05D007269 3.2e-21 107.1 93 50.5
GSVIVG01018418001 Vitis vinifera HOM05D005798 ORTHO05D007269 5.4e-21 106.3 137 41.6
Prupe.2G112500 Prunus persica HOM05D005798 ORTHO05D007269 5.6e-18 96.3 143 42.0
CAN.G74.39 Capsicum annuum HOM05D005798 ORTHO05D007269 2.0e-15 87.8 137 40.9
CAN.G74.38 Capsicum annuum HOM05D005798 ORTHO05D007269 9.9e-15 85.5 83 49.4
HanXRQChr07g0198081 Helianthus annuus HOM05D005798 ORTHO05D007269 3.8e-14 83.6 270 29.3
HPP92_011700 Vanilla planifolia HOM05D005798 ORTHO05D007269 6.6e-11 72.8 57 52.6
EL10Ac6g13432 Beta vulgaris HOM05D005798 ORTHO05D007269 5.6e-10 69.7 82 40.2
Nn3g19415 Nelumbo nucifera HOM05D005798 ORTHO05D007269 7.3e-10 69.3 91 38.5
MBI14_g08084_MAGBIO Magnolia biondii HOM05D005798 ORTHO05D007269 2.4e-08 64.3 85 40.0
TAR375G0441 Trochodendron aralioides HOM05D005798 ORTHO05D007269 1.2e-07 62.0 54 46.3


User provided reference genes

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