Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c5_22540 Physcomitrium patens HOM05D003956 ORTHO05D004850 0.0e+00 1945.6 973 100.0
Mapoly0009s0124 Marchantia polymorpha HOM05D003956 ORTHO05D004850 0.0e+00 1497.6 976 77.4
AagrBONN_evm.TU.Sc2ySwM_228.3276 Anthoceros agrestis HOM05D003956 ORTHO05D004850 0.0e+00 1473.4 885 82.1
Manes.03G188300 Manihot esculenta HOM05D003956 ORTHO05D004850 0.0e+00 1417.5 897 77.8
Nn3g21184 Nelumbo nucifera HOM05D003956 ORTHO05D004850 0.0e+00 1416.4 877 78.3
Peaxi162Scf00095g00414 Petunia axillaris HOM05D003956 ORTHO05D004850 0.0e+00 1414.1 927 75.1
CsaV3_3G013930 Cucumis sativus L. HOM05D003956 ORTHO05D004850 0.0e+00 1413.3 886 78.2
SMO351G0542 Selaginella moellendorffii HOM05D003956 ORTHO05D004850 0.0e+00 1411.4 874 79.1
Sopen01g032260 Solanum pennellii HOM05D003956 ORTHO05D004850 0.0e+00 1411.0 885 78.6
Gorai.011G181800 Gossypium raimondii HOM05D003956 ORTHO05D004850 0.0e+00 1410.2 920 75.8
Sed0002405 Sechium edule HOM05D003956 ORTHO05D004850 0.0e+00 1409.8 886 78.1
Solyc01g080460.3 Solanum lycopersicum HOM05D003956 ORTHO05D004850 0.0e+00 1409.8 885 78.4
Gohir.D10G162900 Gossypium hirsutum HOM05D003956 ORTHO05D004850 0.0e+00 1409.0 920 75.8
PGR004G0287 Punica granatum HOM05D003956 ORTHO05D004850 0.0e+00 1407.5 889 77.6
Dinv44455 Davidia involucrata HOM05D003956 ORTHO05D004850 0.0e+00 1407.1 890 77.4
CAN.G889.10 Capsicum annuum HOM05D003956 ORTHO05D004850 0.0e+00 1406.7 878 78.9
Aqoxy2G03183 Aquilegia oxysepala HOM05D003956 ORTHO05D004850 0.0e+00 1405.6 892 77.2
Duzib212G0153 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1405.6 888 77.4
GSVIVG01017850001 Vitis vinifera HOM05D003956 ORTHO05D004850 0.0e+00 1405.6 889 77.4
Cfa015539 Carpinus fangiana HOM05D003956 ORTHO05D004850 0.0e+00 1405.2 894 77.6
Prupe.1G146600 Prunus persica HOM05D003956 ORTHO05D004850 0.0e+00 1405.2 887 77.5
Os05g0405000 Oryza sativa ssp. japonica HOM05D003956 ORTHO05D004850 0.0e+00 1404.8 881 77.2
Nitab4.5_0000059g0230 Nicotiana tabacum HOM05D003956 ORTHO05D004850 0.0e+00 1404.4 890 77.8
QL06p006231 Quercus lobata HOM05D003956 ORTHO05D004850 0.0e+00 1404.4 901 76.8
Nitab4.5_0010477g0010 Nicotiana tabacum HOM05D003956 ORTHO05D004850 0.0e+00 1403.7 946 74.0
CiPaw.01G156600 Carya illinoinensis HOM05D003956 ORTHO05D004850 0.0e+00 1402.9 889 76.8
Potri.010G027800 Populus trichocarpa HOM05D003956 ORTHO05D004850 0.0e+00 1402.1 905 76.4
Cc03_g02730 Coffea canephora HOM05D003956 ORTHO05D004850 0.0e+00 1401.7 932 75.4
Rhsim04G0213100 Rhododendron simsii HOM05D003956 ORTHO05D004850 0.0e+00 1401.7 890 77.1
TAR365G1004 Trochodendron aralioides HOM05D003956 ORTHO05D004850 0.0e+00 1401.7 881 77.5
CANSAT78G1736 Cannabis sativa HOM05D003956 ORTHO05D004850 0.0e+00 1401.3 890 77.0
Eucgr.H03642 Eucalyptus grandis HOM05D003956 ORTHO05D004850 0.0e+00 1401.3 891 76.9
Thhalv10024330m.g Eutrema salsugineum HOM05D003956 ORTHO05D004850 0.0e+00 1399.0 872 78.3
MD16G1179500 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1398.6 916 75.2
ATR0626G228 Amborella trichopoda HOM05D003956 ORTHO05D004850 0.0e+00 1397.9 874 77.2
Cpa.g.sc16.74 Carica papaya HOM05D003956 ORTHO05D004850 0.0e+00 1394.0 881 77.1
THA.LOC104820228 Tarenaya hassleriana HOM05D003956 ORTHO05D004850 0.0e+00 1393.6 889 76.3
Haze_01011 Corylus avellana HOM05D003956 ORTHO05D004850 0.0e+00 1393.3 888 77.3
CSS0033563 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1392.9 872 77.6
Glyma.07G253700 Glycine max HOM05D003956 ORTHO05D004850 0.0e+00 1392.9 907 75.2
CARHR222330 Cardamine hirsuta HOM05D003956 ORTHO05D004850 0.0e+00 1392.5 887 76.8
MD13G1177400 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1392.5 877 77.7
MD13G1177500 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1391.7 945 73.3
BraA03t14011Z Brassica rapa HOM05D003956 ORTHO05D004850 0.0e+00 1390.9 950 72.5
TWI09G0935 Tripterygium wilfordii HOM05D003956 ORTHO05D004850 0.0e+00 1390.6 881 77.5
Atru.chr4.2704 Acer truncatum HOM05D003956 ORTHO05D004850 0.0e+00 1390.2 889 76.5
FvH4_4g16670 Fragaria vesca HOM05D003956 ORTHO05D004850 0.0e+00 1389.8 879 77.4
Zm00001eb349810 Zea mays HOM05D003956 ORTHO05D004850 0.0e+00 1389.8 878 77.3
Actinidia23451 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1389.4 895 76.3
RcHm_v2.0_Chr4g0420131 Rosa chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1389.0 879 76.9
Sp7g13780 Schrenkiella parvula HOM05D003956 ORTHO05D004850 0.0e+00 1389.0 885 76.5
Glyma.17G020600 Glycine max HOM05D003956 ORTHO05D004850 0.0e+00 1388.2 910 75.5
Ca_21564_v3 Cicer arietinum L. HOM05D003956 ORTHO05D004850 0.0e+00 1387.9 920 74.2
BcaNung00266 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1387.1 872 77.4
Lj4g0014830 Lotus japonicus HOM05D003956 ORTHO05D004850 0.0e+00 1386.7 917 74.0
BcaC06g32940 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1386.3 889 75.9
CDE08G0632 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 0.0e+00 1385.9 912 74.0
FAN22G1243 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1385.9 879 77.5
C07p47210 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1385.2 950 72.1
Ciclev10006837m.g Citrus clementina HOM05D003956 ORTHO05D004850 0.0e+00 1385.2 896 76.8
Nn4g26122 Nelumbo nucifera HOM05D003956 ORTHO05D004850 0.0e+00 1384.8 872 77.4
A01p22040 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1384.0 872 77.1
BraA01t02110Z Brassica rapa HOM05D003956 ORTHO05D004850 0.0e+00 1384.0 872 77.1
Migut.G00282 Erythranthe guttata HOM05D003956 ORTHO05D004850 0.0e+00 1383.6 875 77.1
C01p27430 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1382.9 872 77.1
AT4G15530 Arabidopsis thaliana HOM05D003956 ORTHO05D004850 0.0e+00 1382.5 870 77.5
Aa31LG9G1910 Aethionema arabicum HOM05D003956 ORTHO05D004850 0.0e+00 1381.7 892 75.2
FAN12G0499 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1381.7 889 76.5
FAN12G2270 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1381.7 889 76.5
BolC7t45243H Brassica oleracea HOM05D003956 ORTHO05D004850 0.0e+00 1381.3 950 71.9
Hund20662 Selenicereus undatus HOM05D003956 ORTHO05D004850 0.0e+00 1380.9 890 76.7
TPR.G28132 Trifolium pratense HOM05D003956 ORTHO05D004850 0.0e+00 1380.5 907 74.4
BcaC09g50248 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1379.8 870 77.2
VMungo1215G0684 Vigna mungo HOM05D003956 ORTHO05D004850 0.0e+00 1379.0 895 75.5
FAN07G1911 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1378.2 889 76.4
FAN17G1489 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1377.5 889 76.4
Phvul.003G098200 Phaseolus vulgaris HOM05D003956 ORTHO05D004850 0.0e+00 1377.1 894 75.3
ECA240G3955 Erigeron canadensis HOM05D003956 ORTHO05D004850 0.0e+00 1376.7 896 75.7
Actinidia40209 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1376.3 896 75.6
AL7G39990 Arabidopsis lyrata HOM05D003956 ORTHO05D004850 0.0e+00 1375.5 870 76.8
BolC1t02682H Brassica oleracea HOM05D003956 ORTHO05D004850 0.0e+00 1375.1 879 76.7
A03p49170 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1374.0 940 72.2
Lalb_Chr13g0303991 Lupinus albus HOM05D003956 ORTHO05D004850 0.0e+00 1373.2 889 75.0
MELO3C006585.2 Cucumis melo HOM05D003956 ORTHO05D004850 0.0e+00 1371.3 840 79.4
MSTRG.10031 Avicennia marina HOM05D003956 ORTHO05D004850 0.0e+00 1370.9 872 76.5
PSO302G0065 Papaver somniferum HOM05D003956 ORTHO05D004850 0.0e+00 1370.1 870 76.7
QL06p005921 Quercus lobata HOM05D003956 ORTHO05D004850 0.0e+00 1367.1 874 76.0
PSO170G3340 Papaver somniferum HOM05D003956 ORTHO05D004850 0.0e+00 1366.7 870 76.6
Sabra10G0012900 Salix brachista HOM05D003956 ORTHO05D004850 0.0e+00 1364.7 888 75.3
Lsat_1_v5_gn_5_51481 Lactuca sativa HOM05D003956 ORTHO05D004850 0.0e+00 1360.9 870 76.4
MSTRG.10030 Avicennia marina HOM05D003956 ORTHO05D004850 0.0e+00 1360.1 878 75.3
CDE02G0811 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 0.0e+00 1360.1 904 73.6
PGSC0003DMG400032107 Solanum tuberosum HOM05D003956 ORTHO05D004850 0.0e+00 1357.8 840 79.0
MD16G1179300 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1357.4 856 77.5
MD16G1179400 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1357.4 858 77.7
Sc25g0004550 Simmondsia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1354.7 856 77.1
Lj3C806G12 Lonicera japonica HOM05D003956 ORTHO05D004850 0.0e+00 1353.6 889 75.6
SGA_v2.0_scaffold142G35643 Striga asiatica HOM05D003956 ORTHO05D004850 0.0e+00 1351.3 854 78.2
Carub.0007s2635 Capsella rubella HOM05D003956 ORTHO05D004850 0.0e+00 1350.9 854 77.0
Duzib151G0049 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1349.7 862 76.6
SalBow2G1708 Salvia bowleyana HOM05D003956 ORTHO05D004850 0.0e+00 1349.3 870 76.2
Psat0ss7919g0200 Pisum sativum HOM05D003956 ORTHO05D004850 0.0e+00 1346.6 856 75.9
DCAR_023283 Daucus carota HOM05D003956 ORTHO05D004850 0.0e+00 1337.4 889 75.3
Thecc.04G272800 Theobroma cacao HOM05D003956 ORTHO05D004850 0.0e+00 1337.0 872 74.5
Thecc.04G272600 Theobroma cacao HOM05D003956 ORTHO05D004850 0.0e+00 1334.7 864 76.0
Duzib151G0209 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1333.9 871 74.6
Hma1.2p1_0511F.1_g169230 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 0.0e+00 1332.0 879 74.9
arahy.Tifrunner.gnm1.ann1.EQKV61 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1325.8 933 71.2
arahy.Tifrunner.gnm1.ann1.YQ8C5N Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1324.7 887 73.6
Hund19586 Selenicereus undatus HOM05D003956 ORTHO05D004850 0.0e+00 1320.1 842 76.4
arahy.Tifrunner.gnm1.ann1.I3NY02 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1307.4 901 71.5
PGR031G3666 Punica granatum HOM05D003956 ORTHO05D004850 0.0e+00 1301.2 855 73.7
Ah.11g043140 Amaranthus hybridus HOM05D003956 ORTHO05D004850 0.0e+00 1293.9 881 73.3
ClCG05G005590 Citrullus lanatus HOM05D003956 ORTHO05D004850 0.0e+00 1289.2 877 73.5
unitig_26.g8936 Utricularia gibba HOM05D003956 ORTHO05D004850 0.0e+00 1277.7 872 73.2
vmacro08238 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 0.0e+00 1273.5 1006 65.3
Eucgr.B01186 Eucalyptus grandis HOM05D003956 ORTHO05D004850 0.0e+00 1264.6 823 73.9
Rhsim02G0016700 Rhododendron simsii HOM05D003956 ORTHO05D004850 0.0e+00 1264.2 882 70.6
EL10Ac1g01820 Beta vulgaris HOM05D003956 ORTHO05D004850 0.0e+00 1260.0 881 71.4
Oeu032695.1 Olea europaea HOM05D003956 ORTHO05D004850 0.0e+00 1251.1 772 79.1
Psat4g028880 Pisum sativum HOM05D003956 ORTHO05D004850 0.0e+00 1241.5 818 73.5
Actinidia32373 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1228.8 884 69.6
arahy.Tifrunner.gnm1.ann1.DC6B04 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1219.1 901 67.7
CSS0013368 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1218.4 803 75.3
MCO12G211 Micromonas commoda HOM05D003956 ORTHO05D004850 0.0e+00 1209.9 856 69.9
Cre17.g734548 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 0.0e+00 1199.1 909 66.1
CSS0018237 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1196.8 883 69.8
Zm00001eb287770 Zea mays HOM05D003956 ORTHO05D004850 0.0e+00 1159.1 726 77.7
Hma1.2p1_2025F.1_g311530 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 0.0e+00 1158.7 878 67.7
Gohir.A10G105700 Gossypium hirsutum HOM05D003956 ORTHO05D004850 0.0e+00 1158.3 764 75.0
vmacro15287 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 0.0e+00 1153.7 875 66.4
BcaC09g50243 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1146.0 776 73.6
TPR.G28133 Trifolium pratense HOM05D003956 ORTHO05D004850 0.0e+00 1079.3 873 62.3
Cre10.g424750 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 3.3e-301 1038.5 884 60.2
unitig_749.g14056 Utricularia gibba HOM05D003956 ORTHO05D004850 5.6e-301 1037.7 631 80.3
Migut.G00280 Erythranthe guttata HOM05D003956 ORTHO05D004850 4.6e-271 938.3 577 78.9
MCO01G687 Micromonas commoda HOM05D003956 ORTHO05D004850 2.1e-260 902.9 910 55.2
Medtr4g118350 Medicago truncatula HOM05D003956 ORTHO05D004850 1.0e-241 840.9 565 72.4
AUR62035456 Chenopodium quinoa HOM05D003956 ORTHO05D004850 1.2e-194 684.5 503 69.4
AUR62034950 Chenopodium quinoa HOM05D003956 ORTHO05D004850 4.3e-192 676.0 474 71.1
AUR62035455 Chenopodium quinoa HOM05D003956 ORTHO05D004850 3.1e-190 669.8 450 73.3
CBR_g50184 Chara braunii HOM05D003956 ORTHO05D004850 1.4e-187 661.0 745 50.3
AUR62034949 Chenopodium quinoa HOM05D003956 ORTHO05D004850 8.1e-175 618.6 449 69.0
HanXRQChr03g0080571 Helianthus annuus HOM05D003956 ORTHO05D004850 1.5e-168 597.8 403 73.7
BcaC06g33414 Brassica carinata HOM05D003956 ORTHO05D004850 1.3e-153 548.1 334 80.2
SGA_v2.0_scaffold86G26866 Striga asiatica HOM05D003956 ORTHO05D004850 1.3e-148 531.6 481 60.7
Medtr4g118355 Medicago truncatula HOM05D003956 ORTHO05D004850 1.0e-124 452.2 292 74.0
SGA_v2.0_scaffold86G26865 Striga asiatica HOM05D003956 ORTHO05D004850 6.5e-124 449.5 391 60.4
AUR62034328 Chenopodium quinoa HOM05D003956 ORTHO05D004850 7.2e-99 366.3 421 48.5
arahy.Tifrunner.gnm1.ann1.9WT78J Arachis hypogaea HOM05D003956 ORTHO05D004850 4.1e-94 350.5 316 59.2
arahy.Tifrunner.gnm1.ann1.HZTZ4X Arachis hypogaea HOM05D003956 ORTHO05D004850 7.5e-80 303.1 258 60.9
HanXRQChr16g0518081 Helianthus annuus HOM05D003956 ORTHO05D004850 2.2e-79 301.6 232 67.2
arahy.Tifrunner.gnm1.ann1.7LSJ4G Arachis hypogaea HOM05D003956 ORTHO05D004850 1.1e-57 229.6 227 55.5
arahy.Tifrunner.gnm1.ann1.989M5Y Arachis hypogaea HOM05D003956 ORTHO05D004850 5.8e-56 223.8 216 54.2
unitig_749.g14057 Utricularia gibba HOM05D003956 ORTHO05D004850 1.1e-51 209.5 150 66.7
AagrBONN_evm.TU.Sc2ySwM_362.937 Anthoceros agrestis HOM05D003956 ORTHO05D004850 1.7e-47 195.7 119 79.0
Pp3c6_6540 Physcomitrium patens HOM05D003956 ORTHO05D004850 7.6e-40 170.2 112 75.0
arahy.Tifrunner.gnm1.ann1.S9XVUY Arachis hypogaea HOM05D003956 ORTHO05D004850 3.9e-36 157.9 268 39.6
BcaC09g50244 Brassica carinata HOM05D003956 ORTHO05D004850 9.3e-30 136.7 85 74.1
arahy.Tifrunner.gnm1.ann1.LGH8AH Arachis hypogaea HOM05D003956 ORTHO05D004850 1.9e-27 129.0 83 75.9
Lsat_1_v5_gn_2_81921 Lactuca sativa HOM05D005278 ORTHO05D006500 1.6e-26 125.9 90 67.8
GSVIVG01018502001 Vitis vinifera HOM05D003956 ORTHO05D004850 6.2e-26 124.0 81 74.1
Pp3s196_40 Physcomitrium patens HOM05D003956 ORTHO05D044360 2.6e-24 118.6 428 27.3
arahy.Tifrunner.gnm1.ann1.G5444S Arachis hypogaea HOM05D003956 ORTHO05D004850 1.3e-20 106.3 95 57.9
TPR.G26738 Trifolium pratense HOM05D003956 ORTHO05D000576 9.0e-17 93.6 56 69.6
QL06p005983 Quercus lobata HOM05D003956 ORTHO05D004850 1.3e-15 89.7 130 42.3
TPR.G35464 Trifolium pratense HOM05D003956 ORTHO05D004850 2.3e-12 79.0 60 56.7
MBI15_g32557_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D011598 8.8e-12 77.0 57 68.4
Pp3c5_22980 Physcomitrium patens HOM05D003956 ORTHO05D004850 7.4e-11 73.9 43 83.7
Nn8g40271 Nelumbo nucifera HOM05D001541 ORTHO05D001465 1.1e-09 70.1 59 59.3
arahy.Tifrunner.gnm1.ann1.V4Y3U4 Arachis hypogaea HOM05D003956 ORTHO05D004850 2.4e-09 68.9 49 65.3
arahy.Tifrunner.gnm1.ann1.57CL3B Arachis hypogaea HOM05D003956 ORTHO05D004850 5.3e-09 67.8 46 67.4
SGA_v2.0_scaffold86G26869 Striga asiatica HOM05D000924 ORTHO05D001209 7.7e-08 63.9 48 66.7
HanXRQChr09g0261911 Helianthus annuus HOM05D000495 ORTHO05D000357 5.0e-07 61.2 42 64.3
arahy.Tifrunner.gnm1.ann1.GGZS5I Arachis hypogaea HOM05D003956 ORTHO05D004850 2.5e-06 58.9 43 62.8


User provided reference genes

Program Settings