Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c5_22420 Physcomitrium patens HOM05D004223 ORTHO05D004792 1.7e-216 755.7 380 100.0
Pp3c6_6380 Physcomitrium patens HOM05D004223 ORTHO05D004792 3.6e-163 578.6 380 74.5
Pp3c25_8320 Physcomitrium patens HOM05D004223 ORTHO05D004792 1.7e-136 490.0 380 67.4
Mapoly0056s0052 Marchantia polymorpha HOM05D004223 ORTHO05D004792 1.5e-84 317.4 333 52.0
Duzib235G1300 Durio zibethinus HOM05D004223 ORTHO05D004792 3.5e-73 279.6 324 48.8
MD05G1287300 Malus domestica HOM05D004223 ORTHO05D004792 3.5e-73 279.6 332 45.2
Dinv32277 Davidia involucrata HOM05D004223 ORTHO05D004792 3.8e-72 276.2 307 48.9
Actinidia07682 Actinidia chinensis HOM05D004223 ORTHO05D004792 1.9e-71 273.9 306 49.0
Actinidia19511 Actinidia chinensis HOM05D004223 ORTHO05D004792 4.2e-71 272.7 306 47.4
Aqoxy1G01765 Aquilegia oxysepala HOM05D004223 ORTHO05D004792 5.5e-71 272.3 308 49.0
Nn3g20665 Nelumbo nucifera HOM05D004223 ORTHO05D004792 1.6e-70 270.8 318 48.1
Gohir.A10G039200 Gossypium hirsutum HOM05D004223 ORTHO05D004792 2.8e-70 270.0 332 46.4
Prupe.4G077600 Prunus persica HOM05D004223 ORTHO05D004792 2.8e-70 270.0 306 46.7
Thecc.06G153700 Theobroma cacao HOM05D004223 ORTHO05D004792 4.7e-70 269.2 302 50.0
Gohir.D10G040000 Gossypium hirsutum HOM05D004223 ORTHO05D004792 4.0e-69 266.2 332 45.8
Gorai.011G042100 Gossypium raimondii HOM05D004223 ORTHO05D004792 4.0e-69 266.2 332 45.8
MD10G1264700 Malus domestica HOM05D004223 ORTHO05D004792 1.5e-68 264.2 306 46.1
SMO296G0001 Selaginella moellendorffii HOM05D004223 ORTHO05D004792 2.0e-68 263.8 339 44.8
Sopen02g019940 Solanum pennellii HOM05D004223 ORTHO05D004792 2.6e-68 263.5 305 48.2
Glyma.08G084000 Glycine max HOM05D004223 ORTHO05D004792 7.5e-68 261.9 304 45.7
Glyma.05G129300 Glycine max HOM05D004223 ORTHO05D004792 1.3e-67 261.2 299 46.5
Solyc02g070860.4 Solanum lycopersicum HOM05D004223 ORTHO05D004792 1.3e-67 261.2 305 47.9
Lalb_Chr12g0208891 Lupinus albus HOM05D004223 ORTHO05D004792 3.7e-67 259.6 330 42.4
PSO541G2658 Papaver somniferum HOM05D004223 ORTHO05D004792 3.7e-67 259.6 316 45.9
GSVIVG01021418001 Vitis vinifera HOM05D004223 ORTHO05D004792 4.9e-67 259.2 305 47.9
RcHm_v2.0_Chr5g0013511 Rosa chinensis HOM05D004223 ORTHO05D004792 6.3e-67 258.8 344 43.6
PSO675G0042 Papaver somniferum HOM05D004223 ORTHO05D004792 1.1e-66 258.1 312 46.5
Migut.H01375 Erythranthe guttata HOM05D004223 ORTHO05D004792 1.8e-66 257.3 310 44.8
Ciclev10015725m.g Citrus clementina HOM05D004223 ORTHO05D004792 1.2e-65 254.6 346 41.6
CAN.G257.3 Capsicum annuum HOM05D004223 ORTHO05D004792 2.0e-65 253.8 306 47.7
Ciclev10031935m.g Citrus clementina HOM05D004223 ORTHO05D004792 2.7e-65 253.4 298 47.3
Cfa023352 Carpinus fangiana HOM05D004223 ORTHO05D004792 4.5e-65 252.7 353 40.2
DCAR_027947 Daucus carota HOM05D004223 ORTHO05D004792 5.9e-65 252.3 311 45.0
Phvul.002G194500 Phaseolus vulgaris HOM05D004223 ORTHO05D004792 5.9e-65 252.3 304 45.1
ATR0585G108 Amborella trichopoda HOM05D004223 ORTHO05D004792 7.8e-65 251.9 348 42.5
QL05p059118 Quercus lobata HOM05D004223 ORTHO05D004792 7.8e-65 251.9 318 42.8
MELO3C002724.2 Cucumis melo HOM05D004223 ORTHO05D004792 2.9e-64 250.0 349 44.7
CiPaw.10G093300 Carya illinoinensis HOM05D004223 ORTHO05D004792 3.9e-64 249.6 344 41.0
FvH4_3g05960 Fragaria vesca HOM05D004223 ORTHO05D004792 3.9e-64 249.6 310 44.5
Dinv30715 Davidia involucrata HOM05D004223 ORTHO05D004792 1.9e-63 247.3 256 52.0
PGR042G0116 Punica granatum HOM05D004223 ORTHO05D004792 3.3e-63 246.5 343 41.1
arahy.Tifrunner.gnm1.ann1.KB83YE Arachis hypogaea HOM05D004223 ORTHO05D004792 5.6e-63 245.7 312 42.9
Potri.005G203600 Populus trichocarpa HOM05D004223 ORTHO05D004792 9.5e-63 245.0 318 44.3
arahy.Tifrunner.gnm1.ann1.EM1NUG Arachis hypogaea HOM05D004223 ORTHO05D004792 1.2e-62 244.6 312 42.6
Sc05g0006430 Simmondsia chinensis HOM05D004223 ORTHO05D004792 1.2e-62 244.6 305 45.9
Oeu019944.1 Olea europaea HOM05D004223 ORTHO05D004792 2.1e-62 243.8 340 41.8
CANSAT35G1433 Cannabis sativa HOM05D004223 ORTHO05D004792 2.8e-62 243.4 336 41.7
TWI59G0075 Tripterygium wilfordii HOM05D004223 ORTHO05D004792 2.8e-62 243.4 353 40.8
VMungo0251G1974 Vigna mungo HOM05D004223 ORTHO05D004792 1.0e-61 241.5 277 45.8
Cc09_g08890 Coffea canephora HOM05D004223 ORTHO05D004792 1.4e-61 241.1 306 44.4
Sed0009895 Sechium edule HOM05D004223 ORTHO05D004792 1.8e-61 240.7 330 44.5
Manes.17G067700 Manihot esculenta HOM05D004223 ORTHO05D004792 2.3e-61 240.4 334 41.6
Medtr4g096650 Medicago truncatula HOM05D004223 ORTHO05D004792 2.3e-61 240.4 307 42.7
Migut.M00929 Erythranthe guttata HOM05D004223 ORTHO05D004792 3.1e-61 240.0 308 44.2
Duzib133G0675 Durio zibethinus HOM05D004223 ORTHO05D004792 4.0e-61 239.6 309 42.7
Lsat_1_v5_gn_7_32901 Lactuca sativa HOM05D004223 ORTHO05D004792 4.0e-61 239.6 306 44.8
Nitab4.5_0001655g0250 Nicotiana tabacum HOM05D004223 ORTHO05D004792 4.0e-61 239.6 261 50.6
Ca_06273_v3 Cicer arietinum L. HOM05D004223 ORTHO05D004792 1.2e-60 238.0 362 39.0
FvH4_6g38510 Fragaria vesca HOM05D004223 ORTHO05D004792 1.2e-60 238.0 303 44.2
Potri.002G058500 Populus trichocarpa HOM05D004223 ORTHO05D004792 1.2e-60 238.0 318 43.1
RcHm_v2.0_Chr2g0151741 Rosa chinensis HOM05D004223 ORTHO05D004792 1.2e-60 238.0 303 44.2
Thecc.01G170900 Theobroma cacao HOM05D004223 ORTHO05D004792 1.5e-60 237.7 309 42.4
HanXRQChr04g0118281 Helianthus annuus HOM05D004223 ORTHO05D004792 2.0e-60 237.3 309 44.0
Lj4g0000090 Lotus japonicus HOM05D004223 ORTHO05D004792 3.4e-60 236.5 304 42.8
Rhsim02G0155900 Rhododendron simsii HOM05D004223 ORTHO05D004792 4.9e-59 232.6 248 51.2
TPR.G12676 Trifolium pratense HOM05D004223 ORTHO05D004792 8.3e-59 231.9 347 38.0
ClCG02G018450 Citrullus lanatus HOM05D004223 ORTHO05D004792 1.4e-58 231.1 316 40.8
TWI53G0125 Tripterygium wilfordii HOM05D004223 ORTHO05D004792 1.9e-58 230.7 323 43.7
Os01g0751300 Oryza sativa ssp. japonica HOM05D004223 ORTHO05D004792 3.2e-58 229.9 347 38.9
TPR.G4831 Trifolium pratense HOM05D004223 ORTHO05D004792 3.2e-58 229.9 333 40.2
ECA236G2733 Erigeron canadensis HOM05D004223 ORTHO05D004792 5.4e-58 229.2 295 44.4
Zm00001eb153380 Zea mays HOM05D004223 ORTHO05D004792 7.0e-58 228.8 347 39.2
Psat7g090920 Pisum sativum HOM05D004223 ORTHO05D004792 9.2e-58 228.4 314 40.4
PGR042G1019 Punica granatum HOM05D004223 ORTHO05D004792 2.7e-57 226.9 313 42.8
Aa31LG1G24730 Aethionema arabicum HOM05D004223 ORTHO05D004792 3.5e-57 226.5 304 41.4
MELO3C019676.2 Cucumis melo HOM05D004223 ORTHO05D004792 6.0e-57 225.7 315 40.3
MD17G1137300 Malus domestica HOM05D004223 ORTHO05D004792 1.3e-56 224.6 311 42.1
EL10Ac8g19745 Beta vulgaris HOM05D004223 ORTHO05D004792 2.3e-56 223.8 350 40.0
Gorai.001G092500 Gossypium raimondii HOM05D004223 ORTHO05D004792 1.9e-55 220.7 318 39.9
TAR624G0476 Trochodendron aralioides HOM05D004223 ORTHO05D004792 4.3e-55 219.5 252 48.8
Gohir.A07G080900 Gossypium hirsutum HOM05D004223 ORTHO05D004792 9.5e-55 218.4 320 40.0
Lsat_1_v5_gn_7_7501 Lactuca sativa HOM05D004223 ORTHO05D004792 1.2e-54 218.0 330 42.4
Sed0004086 Sechium edule HOM05D004223 ORTHO05D004792 1.6e-54 217.6 291 41.2
Sed0020532 Sechium edule HOM05D004223 ORTHO05D004792 2.8e-54 216.9 293 40.6
Duzib160G0026 Durio zibethinus HOM05D004223 ORTHO05D004792 6.2e-54 215.7 343 40.5
Atru.chr6.2065 Acer truncatum HOM05D004223 ORTHO05D004792 8.0e-54 215.3 263 46.8
QL08p044806 Quercus lobata HOM05D004223 ORTHO05D004792 8.0e-54 215.3 261 45.6
Medtr5g091370 Medicago truncatula HOM05D004223 ORTHO05D004792 1.1e-53 214.9 313 38.3
THA.LOC104803347 Tarenaya hassleriana HOM05D004223 ORTHO05D004792 1.4e-53 214.5 303 41.6
AL5G40980 Arabidopsis lyrata HOM05D004223 ORTHO05D004792 4.0e-53 213.0 322 38.8
CsaV3_1G032560 Cucumis sativus L. HOM05D004223 ORTHO05D004792 4.0e-53 213.0 265 48.7
CsaV3_6G013790 Cucumis sativus L. HOM05D004223 ORTHO05D004792 5.2e-53 212.6 315 39.0
HPP92_021479 Vanilla planifolia HOM05D004223 ORTHO05D004792 5.2e-53 212.6 292 40.1
ClCG03G006980 Citrullus lanatus HOM05D004223 ORTHO05D004792 2.6e-52 210.3 303 45.2
AT3G59090 Arabidopsis thaliana HOM05D004223 ORTHO05D004792 9.8e-52 208.4 322 37.6
Psat2g016680 Pisum sativum HOM05D004223 ORTHO05D004792 1.7e-51 207.6 293 41.0
CARHR169510 Cardamine hirsuta HOM05D004223 ORTHO05D004792 3.7e-51 206.5 309 38.5
BraA07t30092Z Brassica rapa HOM05D000230 ORTHO05D000176 8.3e-51 205.3 311 37.6
Prupe.3G175100 Prunus persica HOM05D004223 ORTHO05D004792 1.1e-50 204.9 308 39.3
Gohir.D07G086500 Gossypium hirsutum HOM05D004223 ORTHO05D004792 1.9e-50 204.1 318 38.4
BcaC07g40242 Brassica carinata HOM05D004223 ORTHO05D004792 7.0e-50 202.2 313 37.1
C08p34260 Brassica napus HOM05D004223 ORTHO05D004792 7.0e-50 202.2 306 38.2
CiPaw.09G126400 Carya illinoinensis HOM05D004223 ORTHO05D004792 7.0e-50 202.2 238 45.4
FAN11G3669 Fragaria x ananassa HOM05D004223 ORTHO05D004792 9.2e-50 201.8 349 36.7
Carub.0005s2585 Capsella rubella HOM05D004223 ORTHO05D004792 1.6e-49 201.1 307 37.5
C06p25880 Brassica napus HOM05D000230 ORTHO05D000176 1.0e-48 198.4 311 37.0
BolC6t37750H Brassica oleracea HOM05D000230 ORTHO05D000176 1.0e-48 198.4 311 37.0
Nitab4.5_0001040g0160 Nicotiana tabacum HOM05D004223 ORTHO05D004792 1.7e-48 197.6 357 37.5
Sp5g03900 Schrenkiella parvula HOM05D004223 ORTHO05D004792 2.3e-48 197.2 310 35.8
A07p24480 Brassica napus HOM05D000230 ORTHO05D000176 3.0e-48 196.8 311 36.7
SalBow8G4695 Salvia bowleyana HOM05D004223 ORTHO05D004792 3.9e-48 196.4 399 34.3
SalBow8G5598 Salvia bowleyana HOM05D004223 ORTHO05D004792 3.9e-48 196.4 399 34.3
unitig_92.g28154 Utricularia gibba HOM05D004223 ORTHO05D004792 3.9e-48 196.4 297 39.7
MSTRG.7472 Avicennia marina HOM05D004223 ORTHO05D004792 8.6e-48 195.3 248 43.5
BcaC07g40241 Brassica carinata HOM05D004223 ORTHO05D004792 8.6e-48 195.3 280 38.9
BolC8t51023H Brassica oleracea HOM05D004223 ORTHO05D004792 8.6e-48 195.3 280 38.9
BraA09t40587Z Brassica rapa HOM05D004223 ORTHO05D004792 1.1e-47 194.9 326 36.2
Thhalv10006050m.g Eutrema salsugineum HOM05D004223 ORTHO05D004792 3.6e-46 189.9 307 36.5
BcaC08g44958 Brassica carinata HOM05D000230 ORTHO05D000176 2.6e-44 183.7 310 36.1
A09p51500 Brassica napus HOM05D004223 ORTHO05D004792 4.4e-44 183.0 322 35.4
DCAR_003936 Daucus carota HOM05D004223 ORTHO05D004792 4.4e-44 183.0 220 48.6
Ah.14g086580 Amaranthus hybridus HOM05D004223 ORTHO05D004792 1.4e-42 177.9 261 41.4
AUR62030243 Chenopodium quinoa HOM05D004223 ORTHO05D004792 1.6e-41 174.5 310 36.8
Peaxi162Scf00214g01114 Petunia axillaris HOM05D004223 ORTHO05D004792 4.6e-41 172.9 253 41.9
CDE09G0669 Ceratophyllum demersum HOM05D004223 ORTHO05D004792 5.1e-40 169.5 222 44.6
Oeu046871.2 Olea europaea HOM05D004223 ORTHO05D004792 5.6e-39 166.0 230 42.2
Sabra02G0047600 Salix brachista HOM05D004223 ORTHO05D004792 5.6e-39 166.0 239 41.8
SGA_v2.0_scaffold1G00153 Striga asiatica HOM05D004223 ORTHO05D004792 7.3e-39 165.6 319 37.0
BcaB02g07485 Brassica carinata HOM05D004223 ORTHO05D004792 1.1e-37 161.8 362 30.9
COL.COLO4_07169 Corchorus olitorius HOM05D000230 ORTHO05D000176 1.8e-37 161.0 279 36.9
SMO174G0155 Selaginella moellendorffii HOM05D004223 ORTHO05D004792 4.4e-36 156.4 242 38.8
Actinidia39561 Actinidia chinensis HOM05D004223 ORTHO05D004792 1.3e-35 154.8 266 40.2
SalBow7G0638 Salvia bowleyana HOM05D004223 ORTHO05D004792 2.9e-35 153.7 200 42.0
SGA_v2.0_scaffold333G49006 Striga asiatica HOM05D004223 ORTHO05D004792 1.4e-34 151.4 256 37.1
FAN02G1578 Fragaria x ananassa HOM05D004223 ORTHO05D004792 2.4e-34 150.6 355 33.0
Eucgr.A02011 Eucalyptus grandis HOM05D004223 ORTHO05D004792 1.0e-32 145.2 239 38.5
COL.COLO4_06072 Corchorus olitorius HOM05D004223 ORTHO05D004792 2.1e-30 137.5 145 49.7
Hund21517 Selenicereus undatus HOM05D004223 ORTHO05D004792 2.8e-30 137.1 310 32.6
Atru.chr10.1338 Acer truncatum HOM05D004223 ORTHO05D004792 1.5e-28 131.3 119 53.8
unitig_37.g12104 Utricularia gibba HOM05D004223 ORTHO05D004792 2.2e-27 127.5 139 47.5
MSTRG.16215 Avicennia marina HOM05D004223 ORTHO05D004792 1.1e-26 125.2 139 46.0
FAN16G0695 Fragaria x ananassa HOM05D004223 ORTHO05D004792 1.1e-26 125.2 237 34.6
Ca_18272_v3 Cicer arietinum L. HOM05D004223 ORTHO05D004792 3.2e-26 123.6 165 38.2
Actinidia22922 Actinidia chinensis HOM05D004223 ORTHO05D004792 2.7e-25 120.6 139 48.2
Atru.chr10.1339 Acer truncatum HOM05D004223 ORTHO05D004792 1.3e-24 118.2 133 46.6
FAN21G3874 Fragaria x ananassa HOM05D004223 ORTHO05D004792 9.0e-21 105.5 166 42.2
FAN14G4329 Fragaria x ananassa HOM05D004223 ORTHO05D004792 7.6e-20 102.4 303 30.7
Duzib138G1261 Durio zibethinus HOM05D004223 ORTHO05D004792 8.4e-19 99.0 318 27.4
vmacro10944 Vaccinium macrocarpon HOM05D004223 ORTHO05D004792 2.4e-18 97.4 391 25.8
MBI10_g27412_MAGBIO Magnolia biondii HOM05D004223 ORTHO05D004792 1.2e-17 95.1 168 37.5
Oeu040112.1 Olea europaea HOM05D004223 ORTHO05D004792 1.2e-17 95.1 103 48.5
Actinidia22925 Actinidia chinensis HOM05D004223 ORTHO05D004792 3.0e-16 90.5 76 56.6
CSS0012222 Camellia sinensis var. sinensis HOM05D004223 ORTHO05D004792 1.1e-15 88.6 102 47.1
unitig_37.g12105 Utricularia gibba HOM05D004223 ORTHO05D004792 2.8e-14 84.0 112 40.2
TPR.G14049 Trifolium pratense HOM05D004223 ORTHO05D004792 8.1e-14 82.4 107 43.9
FAN05G0022 Fragaria x ananassa HOM05D004223 ORTHO05D004792 9.0e-13 79.0 319 28.8
Oeu040113.1 Olea europaea HOM05D004223 ORTHO05D004792 9.0e-13 79.0 137 35.0
Haze_05551 Corylus avellana HOM05D004223 ORTHO05D004792 1.5e-12 78.2 96 41.7
Haze_13521 Corylus avellana HOM05D004223 ORTHO05D004792 4.2e-10 70.1 69 49.3
CDE02G0113 Ceratophyllum demersum HOM05D004223 ORTHO05D004792 5.5e-10 69.7 95 41.1
CSS0013327 Camellia sinensis var. sinensis HOM05D004223 ORTHO05D004792 2.1e-09 67.8 107 39.3
Dinv05252 Davidia involucrata HOM05D004223 ORTHO05D004792 2.7e-09 67.4 78 46.2
SMO174G0183 Selaginella moellendorffii HOM05D010282 ORTHO05D004792 3.9e-08 63.5 257 25.3
vmacro10943 Vaccinium macrocarpon HOM05D004223 ORTHO05D004792 2.5e-07 60.8 45 64.4
CBR_g22030 Chara braunii HOM05D001248 ORTHO05D001183 5.7e-07 59.7 302 25.2
Pp3c2_8490 Physcomitrium patens HOM05D001248 ORTHO05D001183 7.4e-07 59.3 302 25.2
CBR_g20333 Chara braunii HOM05D001248 ORTHO05D001183 1.3e-06 58.5 308 25.3
QL05p059167 Quercus lobata HOM05D004223 ORTHO05D004792 2.1e-06 57.8 93 33.3
HanXRQChr16g0514421 Helianthus annuus HOM05D001248 ORTHO05D001183 4.8e-06 56.6 304 24.7
Sopen01g047770 Solanum pennellii HOM05D001248 ORTHO05D001183 4.8e-06 56.6 304 23.4
CSS0014222 Camellia sinensis var. sinensis HOM05D004223 ORTHO05D004792 6.2e-06 56.2 54 55.6
Dinv05253 Davidia involucrata HOM05D004223 ORTHO05D004792 6.2e-06 56.2 87 35.6
Solyc01g105270.4 Solanum lycopersicum HOM05D001248 ORTHO05D001183 6.2e-06 56.2 304 23.4
HanXRQChr10g0295901 Helianthus annuus HOM05D001248 ORTHO05D001183 8.2e-06 55.8 303 24.1


User provided reference genes

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