Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c5_21890 Physcomitrium patens HOM05D004583 ORTHO05D005469 0.0e+00 1161.7 603 100.0
Pp3c5_21897 Physcomitrium patens HOM05D004583 ORTHO05D005469 0.0e+00 1161.7 603 100.0
Pp3c6_5840 Physcomitrium patens HOM05D004583 ORTHO05D005469 7.2e-291 1003.4 603 86.4
Pp3c9_19040 Physcomitrium patens HOM05D004583 ORTHO05D005469 3.8e-223 778.5 599 70.3
Pp3c15_22980 Physcomitrium patens HOM05D004583 ORTHO05D005469 5.3e-217 758.1 547 74.2
Mapoly0168s0005 Marchantia polymorpha HOM05D004583 ORTHO05D005469 1.1e-182 644.0 550 66.0
SMO238G0017 Selaginella moellendorffii HOM05D004583 ORTHO05D005469 6.4e-130 468.8 523 51.6
Nn6g35316 Nelumbo nucifera HOM05D004583 ORTHO05D005469 7.8e-128 461.8 575 46.6
MBI04_g20300_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 1.5e-126 457.6 574 45.1
ATR0705G143 Amborella trichopoda HOM05D004583 ORTHO05D005469 3.6e-125 453.0 580 46.6
TAR636G0454 Trochodendron aralioides HOM05D004583 ORTHO05D005469 5.3e-124 449.1 591 44.8
PSO210G3632 Papaver somniferum HOM05D004583 ORTHO05D005469 2.4e-116 423.7 576 43.9
Ciclev10007949m.g Citrus clementina HOM05D004583 ORTHO05D005469 7.6e-115 418.7 575 43.0
Potri.018G046700 Populus trichocarpa HOM05D004583 ORTHO05D005469 6.4e-114 415.6 572 42.3
MD15G1090900 Malus domestica HOM05D004583 ORTHO05D005469 8.4e-114 415.2 587 43.3
HanXRQChr11g0352321 Helianthus annuus HOM05D004583 ORTHO05D005469 1.1e-113 414.8 584 43.0
Hma1.2p1_0049F.1_g028360 Hydrangea macrophylla HOM05D004583 ORTHO05D005469 1.9e-113 414.1 594 43.3
CSS0042231 Camellia sinensis var. sinensis HOM05D004583 ORTHO05D005469 9.3e-113 411.8 585 41.9
QL12p041048 Quercus lobata HOM05D004583 ORTHO05D005469 9.3e-113 411.8 576 43.4
Pp3c16_16060 Physcomitrium patens HOM05D004583 ORTHO05D005469 3.5e-112 409.8 647 42.3
Lsat_1_v5_gn_1_42160 Lactuca sativa HOM05D004583 ORTHO05D005469 4.6e-112 409.5 574 43.6
Cfa013385 Carpinus fangiana HOM05D004583 ORTHO05D005469 7.9e-112 408.7 569 42.2
Potri.006G236400 Populus trichocarpa HOM05D004583 ORTHO05D005469 1.3e-111 407.9 571 40.6
PSO210G2011 Papaver somniferum HOM05D004583 ORTHO05D005469 2.3e-111 407.1 576 43.1
CAN.G208.65 Capsicum annuum HOM05D004583 ORTHO05D005469 3.0e-111 406.8 562 42.3
Prupe.1G445300 Prunus persica HOM05D004583 ORTHO05D005469 3.0e-111 406.8 573 42.9
Aqoxy7G03869 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 3.9e-111 406.4 586 41.6
Pp3c27_6400 Physcomitrium patens HOM05D004583 ORTHO05D005469 5.1e-111 406.0 641 45.1
TAR624G1263 Trochodendron aralioides HOM05D004583 ORTHO05D005469 5.1e-111 406.0 597 41.4
GSVIVG01035292001 Vitis vinifera HOM05D004583 ORTHO05D005469 6.7e-111 405.6 578 41.5
TWI63G0012 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 1.1e-110 404.8 585 42.4
Sabra18G0045300 Salix brachista HOM05D004583 ORTHO05D005469 1.9e-110 404.1 592 41.0
CiPaw.08G027000 Carya illinoinensis HOM05D004583 ORTHO05D005469 3.3e-110 403.3 593 41.7
Cc08_g09870 Coffea canephora HOM05D004583 ORTHO05D005469 1.3e-109 401.4 577 41.8
MD08G1111400 Malus domestica HOM05D004583 ORTHO05D005469 1.6e-109 401.0 571 42.4
SEGI_02523 Sequoiadendron giganteum HOM05D004583 ORTHO05D005469 3.7e-109 399.8 484 49.6
PGR031G0432 Punica granatum HOM05D004583 ORTHO05D005469 4.8e-109 399.4 586 42.3
Sed0024833 Sechium edule HOM05D004583 ORTHO05D005469 4.8e-109 399.4 573 40.5
ClCG08G012110 Citrullus lanatus HOM05D004583 ORTHO05D005469 1.1e-108 398.3 569 42.0
Hund03382 Selenicereus undatus HOM05D004583 ORTHO05D005469 1.1e-108 398.3 575 39.7
Thecc.09G047500 Theobroma cacao HOM05D004583 ORTHO05D005469 1.1e-108 398.3 570 40.0
CANSAT25G3668 Cannabis sativa HOM05D004583 ORTHO05D005469 4.0e-108 396.4 586 40.4
Sopen12g031740 Solanum pennellii HOM05D004583 ORTHO05D005469 5.3e-108 396.0 587 39.7
DCAR_004462 Daucus carota HOM05D004583 ORTHO05D005469 6.9e-108 395.6 571 41.3
RcHm_v2.0_Chr6g0306601 Rosa chinensis HOM05D004583 ORTHO05D005469 9.0e-108 395.2 571 41.0
Solyc12g095840.2 Solanum lycopersicum HOM05D004583 ORTHO05D005469 9.0e-108 395.2 587 39.7
Manes.16G073800 Manihot esculenta HOM05D004583 ORTHO05D005469 2.6e-107 393.7 573 40.8
Gorai.001G026100 Gossypium raimondii HOM05D004583 ORTHO05D005469 4.5e-107 392.9 574 41.1
Sabra06G0184800 Salix brachista HOM05D004583 ORTHO05D005469 4.5e-107 392.9 575 40.3
Nitab4.5_0001737g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 5.8e-107 392.5 585 40.7
Nitab4.5_0001309g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 1.0e-106 391.7 546 42.3
BcaB08g35216 Brassica carinata HOM05D004583 ORTHO05D005469 1.7e-106 391.0 591 39.8
Eucgr.C00611 Eucalyptus grandis HOM05D004583 ORTHO05D005469 1.7e-106 391.0 576 40.3
AT2G25740 Arabidopsis thaliana HOM05D004583 ORTHO05D005469 2.2e-106 390.6 587 39.5
Gohir.D07G025000 Gossypium hirsutum HOM05D004583 ORTHO05D005469 2.2e-106 390.6 574 41.1
Peaxi162Scf00064g01528 Petunia axillaris HOM05D004583 ORTHO05D005469 2.9e-106 390.2 577 40.7
Thhalv10001956m.g Eutrema salsugineum HOM05D004583 ORTHO05D005469 4.9e-106 389.4 587 40.2
FAN20G1421 Fragaria x ananassa HOM05D004583 ORTHO05D005469 4.9e-106 389.4 571 40.1
Zm00001eb293710 Zea mays HOM05D004583 ORTHO05D005469 4.9e-106 389.4 588 38.9
FvH4_2g35320 Fragaria vesca HOM05D004583 ORTHO05D005469 6.5e-106 389.0 573 40.5
BcaC07g40848 Brassica carinata HOM05D004583 ORTHO05D005469 8.4e-106 388.7 575 40.3
BolC3t15588H Brassica oleracea HOM05D004583 ORTHO05D005469 8.4e-106 388.7 587 40.7
Sc09g0009440 Simmondsia chinensis HOM05D004583 ORTHO05D005469 8.4e-106 388.7 589 40.2
Actinidia15745 Actinidia chinensis HOM05D004583 ORTHO05D005469 1.4e-105 387.9 586 41.0
C03p32470 Brassica napus HOM05D004583 ORTHO05D005469 1.9e-105 387.5 594 40.2
BolC8t51418H Brassica oleracea HOM05D004583 ORTHO05D005469 1.9e-105 387.5 575 40.3
Gohir.A07G022241 Gossypium hirsutum HOM05D004583 ORTHO05D005469 1.9e-105 387.5 576 41.1
Sp4g05420 Schrenkiella parvula HOM05D004583 ORTHO05D005469 5.5e-105 386.0 602 39.4
A03p27060 Brassica napus HOM05D004583 ORTHO05D005469 2.1e-104 384.0 593 40.3
VMungo1309G0941 Vigna mungo HOM05D004583 ORTHO05D005469 2.7e-104 383.6 603 38.6
Migut.E01537 Erythranthe guttata HOM05D004583 ORTHO05D005469 6.0e-104 382.5 587 39.9
Oeu038813.1 Olea europaea HOM05D004583 ORTHO05D005469 6.0e-104 382.5 594 39.2
AL4G17420 Arabidopsis lyrata HOM05D004583 ORTHO05D005469 1.0e-103 381.7 586 38.7
arahy.Tifrunner.gnm1.ann1.R6LPAT Arachis hypogaea HOM05D004583 ORTHO05D005469 1.0e-103 381.7 577 40.6
BraA03t11919Z Brassica rapa HOM05D004583 ORTHO05D005469 1.0e-103 381.7 593 40.1
SHI18791 Sapria himalayana HOM05D004583 ORTHO05D005469 1.0e-103 381.7 597 41.2
Carub.0004s0553 Capsella rubella HOM05D004583 ORTHO05D005469 2.3e-103 380.6 597 38.9
CBR_g21950 Chara braunii HOM05D004583 ORTHO05D005469 2.3e-103 380.6 691 39.8
A09p55470 Brassica napus HOM05D004583 ORTHO05D005469 3.0e-103 380.2 586 38.9
Os05g0521500 Oryza sativa ssp. japonica HOM05D004583 ORTHO05D005469 3.0e-103 380.2 583 40.3
TPR.G24505 Trifolium pratense HOM05D004583 ORTHO05D005469 6.7e-103 379.0 586 39.9
Phvul.009G111600 Phaseolus vulgaris HOM05D004583 ORTHO05D005469 1.5e-102 377.9 591 39.3
TWI34G1497 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 2.5e-102 377.1 584 39.7
Medtr1g007160 Medicago truncatula HOM05D004583 ORTHO05D005469 7.4e-102 375.6 595 39.3
Rhsim02G0175400 Rhododendron simsii HOM05D004583 ORTHO05D005469 1.6e-101 374.4 580 40.2
EL10Ac2g03985 Beta vulgaris HOM05D004583 ORTHO05D005469 2.8e-101 373.6 597 38.4
Aa31LG5G9840 Aethionema arabicum HOM05D004583 ORTHO05D005469 6.2e-101 372.5 578 39.6
MSTRG.14029 Avicennia marina HOM05D004583 ORTHO05D005469 1.8e-100 370.9 585 38.1
AagrBONN_evm.TU.Sc2ySwM_117.1952 Anthoceros agrestis HOM05D004583 ORTHO05D005469 3.1e-100 370.2 486 47.7
Psat6g035200 Pisum sativum HOM05D004583 ORTHO05D005469 4.1e-100 369.8 576 39.8
Duzib168G1134 Durio zibethinus HOM05D004583 ORTHO05D005469 6.9e-100 369.0 572 38.6
Lj1g0018877 Lotus japonicus HOM05D004583 ORTHO05D005469 6.9e-100 369.0 589 38.5
ECA248G2390 Erigeron canadensis HOM05D004583 ORTHO05D005469 9.0e-100 368.6 576 39.1
AUR62041959 Chenopodium quinoa HOM05D004583 ORTHO05D005469 1.7e-98 364.4 556 39.4
THA.LOC104803803 Tarenaya hassleriana HOM05D004583 ORTHO05D005469 5.0e-98 362.8 573 38.6
unitig_32.g11475 Utricularia gibba HOM05D004583 ORTHO05D005469 1.1e-97 361.7 575 38.8
AUR62009234 Chenopodium quinoa HOM05D004583 ORTHO05D005469 1.9e-97 360.9 588 37.9
Lalb_Chr22g0361041 Lupinus albus HOM05D004583 ORTHO05D005469 2.5e-97 360.5 571 38.9
Ca_15574_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 5.5e-97 359.4 584 38.0
CsaV3_2G030710 Cucumis sativus L. HOM05D004583 ORTHO05D005469 7.2e-97 359.0 583 39.1
FAN27G2572 Fragaria x ananassa HOM05D004583 ORTHO05D005469 7.9e-96 355.5 592 38.2
CARHR115490 Cardamine hirsuta HOM05D004583 ORTHO05D005469 1.3e-95 354.8 518 39.4
Medtr3g110340 Medicago truncatula HOM05D004583 ORTHO05D005469 2.3e-95 354.0 561 39.6
SGA_v2.0_scaffold169G38659 Striga asiatica HOM05D004583 ORTHO05D005469 2.3e-95 354.0 620 35.8
C08p38460 Brassica napus HOM05D004583 ORTHO05D005469 5.1e-95 352.8 575 38.4
SalBow1G6079 Salvia bowleyana HOM05D004583 ORTHO05D005469 2.5e-94 350.5 598 36.6
AUR62041963 Chenopodium quinoa HOM05D004583 ORTHO05D005469 7.4e-94 349.0 614 37.1
Psat5g020600 Pisum sativum HOM05D004583 ORTHO05D005469 9.7e-94 348.6 521 39.0
TPR.G12398 Trifolium pratense HOM05D004583 ORTHO05D005469 2.4e-92 344.0 580 37.9
Glyma.04G086400 Glycine max HOM05D004583 ORTHO05D005469 1.5e-91 341.3 494 39.7
arahy.Tifrunner.gnm1.ann1.AK4U3Y Arachis hypogaea HOM05D004583 ORTHO05D005469 2.6e-91 340.5 512 38.5
BraA09t40949Z Brassica rapa HOM05D004583 ORTHO05D005469 2.6e-91 340.5 552 38.6
CANSAT35G1178 Cannabis sativa HOM05D004583 ORTHO05D005469 4.5e-91 339.7 593 37.3
Dinv23388 Davidia involucrata HOM05D004583 ORTHO05D005469 4.5e-91 339.7 519 43.7
arahy.Tifrunner.gnm1.ann1.M0YYQ7 Arachis hypogaea HOM05D004583 ORTHO05D005469 5.9e-91 339.3 512 38.3
MSTRG.1664 Avicennia marina HOM05D004583 ORTHO05D005469 1.0e-90 338.6 501 39.7
FAN15G2845 Fragaria x ananassa HOM05D004583 ORTHO05D005469 1.3e-90 338.2 573 37.7
Aqoxy7G01424 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 1.6e-88 331.3 583 37.4
Os01g0743600 Oryza sativa ssp. japonica HOM05D004583 ORTHO05D005469 2.1e-88 330.9 574 38.2
Lj7C698G10 Lonicera japonica HOM05D004583 ORTHO05D005469 2.3e-87 327.4 541 38.1
COL.COLO4_20995 Corchorus olitorius HOM05D004583 ORTHO05D005469 2.0e-86 324.3 541 38.4
BcaC01g04904 Brassica carinata HOM05D004583 ORTHO05D005469 3.3e-86 323.6 596 37.6
MELO3C011128.2 Cucumis melo HOM05D004583 ORTHO05D005469 9.7e-86 322.0 658 33.9
arahy.Tifrunner.gnm1.ann1.6GB5J4 Arachis hypogaea HOM05D004583 ORTHO05D005469 1.1e-84 318.5 546 38.6
HPP92_022971 Vanilla planifolia HOM05D004583 ORTHO05D005469 3.8e-82 310.1 480 38.3
Lalb_Chr23g0269711 Lupinus albus HOM05D004583 ORTHO05D005469 6.5e-82 309.3 521 34.9
vmacro11048 Vaccinium macrocarpon HOM05D004583 ORTHO05D005469 3.7e-77 293.5 555 35.1
CiPaw.07G202200 Carya illinoinensis HOM05D004583 ORTHO05D005469 4.1e-76 290.0 492 39.2
Zm00001eb153580 Zea mays HOM05D004583 ORTHO05D005469 6.5e-74 282.7 576 33.5
Actinidia14686 Actinidia chinensis HOM05D004583 ORTHO05D005469 1.1e-73 282.0 594 33.8
DCAR_003076 Daucus carota HOM05D004583 ORTHO05D005469 9.4e-65 252.3 544 34.4
Rhsim02G0175600 Rhododendron simsii HOM05D004583 ORTHO05D005469 9.4e-65 252.3 504 36.7
Haze_21911 Corylus avellana HOM05D004583 ORTHO05D005469 1.7e-61 241.5 287 45.6
CDE02G1982 Ceratophyllum demersum HOM05D004583 ORTHO05D001336 5.9e-59 233.0 388 36.3
Atru.chr7.2059 Acer truncatum HOM05D004583 ORTHO05D005469 3.2e-57 227.3 281 43.8
MBI04_g32315_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 7.7e-51 206.1 165 55.8
Cpa.g.sc7.206 Carica papaya HOM05D004583 ORTHO05D005469 1.6e-48 198.4 157 54.8
CDE02G3504 Ceratophyllum demersum HOM05D004583 ORTHO05D005469 9.2e-36 156.0 155 58.7
Haze_21912 Corylus avellana HOM05D004583 ORTHO05D005469 5.6e-33 146.7 147 54.4
MBI04_g42480_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 7.3e-33 146.4 152 55.3
TPR.G9691 Trifolium pratense HOM05D004583 ORTHO05D005469 3.6e-32 144.1 191 39.8
Atru.chr7.2058 Acer truncatum HOM05D004583 ORTHO05D005469 1.4e-28 132.1 129 51.9
PRCOL_00000859 Prasinoderma coloniale HOM05D004583 ORTHO05D005469 8.6e-26 122.9 182 40.1
Glyma.06G087900 Glycine max HOM05D004583 ORTHO05D005469 1.1e-25 122.5 117 47.9
Ah.10g034890 Amaranthus hybridus HOM05D004583 ORTHO05D005469 1.4e-23 115.5 418 27.8
Aqoxy6G01950 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 3.7e-21 107.5 310 32.3
MCO16G603 Micromonas commoda HOM05D004583 ORTHO05D005469 4.9e-21 107.1 173 37.0
Ca_19225_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 1.9e-20 105.1 159 40.3
Aqoxy6G01951 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 2.1e-19 101.7 94 48.9
Lj4g0027824 Lotus japonicus HOM05D004583 ORTHO05D005469 6.6e-18 96.7 130 43.1
Ca_12761_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 1.1e-17 95.9 127 43.3
HPP92_022972 Vanilla planifolia HOM05D004583 ORTHO05D005469 8.1e-16 89.7 96 54.2
Cpa.g.c37634 Carica papaya HOM05D004583 ORTHO05D005469 2.2e-13 81.6 280 30.0
TPR.G7872 Trifolium pratense HOM05D004583 ORTHO05D005469 1.9e-12 78.6 102 41.2
Duzib150G0365 Durio zibethinus HOM05D004583 ORTHO05D005469 1.2e-11 75.9 62 50.0
Ah.02g113790 Amaranthus hybridus HOM05D000041 ORTHO05D006140 5.3e-07 60.5 112 30.4
Cre13.g585651 Chlamydomonas reinhardtii HOM05D004583 ORTHO05D005469 4.5e-06 57.4 117 34.2
Cpa.g.c46051 Carica papaya HOM05D004583 ORTHO05D005469 5.8e-06 57.0 39 61.5
CDE02G0410 Ceratophyllum demersum HOM05D000041 ORTHO05D006140 7.6e-06 56.6 112 27.7
CDE04G1628 Ceratophyllum demersum HOM05D000041 ORTHO05D006140 7.6e-06 56.6 112 30.4
SEGI_19140 Sequoiadendron giganteum HOM05D004346 ORTHO05D005153 7.6e-06 56.6 117 29.9


User provided reference genes

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