Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c5_20880 Physcomitrium patens HOM05D006193 ORTHO05D007808 5.8e-50 200.7 107 100.0
Mapoly0038s0090 Marchantia polymorpha HOM05D006193 ORTHO05D007808 8.1e-20 100.5 99 51.5
GSVIVG01016260001 Vitis vinifera HOM05D006193 ORTHO05D007808 6.9e-19 97.4 103 50.5
HPP92_011207 Vanilla planifolia HOM05D006193 ORTHO05D007808 4.9e-17 91.3 104 47.1
arahy.Tifrunner.gnm1.ann1.4G5N71 Arachis hypogaea HOM05D006193 ORTHO05D007808 8.4e-17 90.5 103 46.6
arahy.Tifrunner.gnm1.ann1.889ECD Arachis hypogaea HOM05D006193 ORTHO05D007808 8.4e-17 90.5 103 46.6
Lj5g0007819 Lotus japonicus HOM05D006193 ORTHO05D007808 1.9e-16 89.4 103 45.6
PSO210G4078 Papaver somniferum HOM05D006193 ORTHO05D007808 3.2e-16 88.6 103 47.6
Eucgr.J01081 Eucalyptus grandis HOM05D006193 ORTHO05D007808 4.2e-16 88.2 100 45.0
PSO832G3015 Papaver somniferum HOM05D006193 ORTHO05D007808 4.2e-16 88.2 103 46.6
TAR623G1160 Trochodendron aralioides HOM05D006193 ORTHO05D007808 4.2e-16 88.2 103 44.7
Peaxi162Scf00011g01839 Petunia axillaris HOM05D006193 ORTHO05D007808 5.5e-16 87.8 99 45.5
Migut.D01650 Erythranthe guttata HOM05D006193 ORTHO05D007808 7.1e-16 87.4 103 42.7
Migut.F01979 Erythranthe guttata HOM05D006193 ORTHO05D007808 7.1e-16 87.4 103 42.7
SalBow4G2149 Salvia bowleyana HOM05D006193 ORTHO05D007808 7.1e-16 87.4 103 43.7
Lalb_Chr01g0009491 Lupinus albus HOM05D006193 ORTHO05D007808 9.3e-16 87.0 103 43.7
Nn2g10831 Nelumbo nucifera HOM05D006193 ORTHO05D007808 9.3e-16 87.0 106 45.3
Nitab4.5_0000071g0090 Nicotiana tabacum HOM05D006193 ORTHO05D007808 9.3e-16 87.0 101 44.6
Hund05693 Selenicereus undatus HOM05D006193 ORTHO05D007808 9.3e-16 87.0 96 46.9
TPR.G1973 Trifolium pratense HOM05D006193 ORTHO05D007808 9.3e-16 87.0 103 42.7
ATR0329G030 Amborella trichopoda HOM05D006193 ORTHO05D007808 1.6e-15 86.3 103 43.7
Ciclev10033053m.g Citrus clementina HOM05D006193 ORTHO05D007808 1.6e-15 86.3 103 42.7
Nitab4.5_0006507g0010 Nicotiana tabacum HOM05D006193 ORTHO05D007808 1.6e-15 86.3 99 44.4
Peaxi162Scf00370g00117 Petunia axillaris HOM05D006193 ORTHO05D007808 1.6e-15 86.3 99 44.4
SGA_v2.0_scaffold355G49780 Striga asiatica HOM05D006193 ORTHO05D007808 1.6e-15 86.3 103 40.8
Atru.chr12.797 Acer truncatum HOM05D006193 ORTHO05D007808 2.1e-15 85.9 103 44.7
Gohir.A06G167900 Gossypium hirsutum HOM05D006193 ORTHO05D007808 2.1e-15 85.9 106 40.6
Potri.010G223700 Populus trichocarpa HOM05D006193 ORTHO05D007808 2.1e-15 85.9 103 43.7
Solyc03g007490.3 Solanum lycopersicum HOM05D006193 ORTHO05D007808 2.1e-15 85.9 99 44.4
Sopen03g003450 Solanum pennellii HOM05D006193 ORTHO05D007808 2.1e-15 85.9 99 44.4
TWI63G1140 Tripterygium wilfordii HOM05D006193 ORTHO05D007808 2.1e-15 85.9 103 44.7
Glyma.20G180500 Glycine max HOM05D006193 ORTHO05D007808 2.7e-15 85.5 105 42.9
PGSC0003DMG400009070 Solanum tuberosum HOM05D006193 ORTHO05D007808 2.7e-15 85.5 99 44.4
Actinidia38857 Actinidia chinensis HOM05D006193 ORTHO05D007808 3.5e-15 85.1 100 43.0
FvH4_7g19210 Fragaria vesca HOM05D006193 ORTHO05D007808 3.5e-15 85.1 103 42.7
Os03g0288400 Oryza sativa ssp. japonica HOM05D006193 ORTHO05D007808 3.5e-15 85.1 103 43.7
VMungo0720G0734 Vigna mungo HOM05D006193 ORTHO05D007808 3.5e-15 85.1 105 43.8
Manes.10G047101 Manihot esculenta HOM05D006193 ORTHO05D007808 4.6e-15 84.7 103 45.6
PGR044G2737 Punica granatum HOM05D006193 ORTHO05D007808 4.6e-15 84.7 100 44.0
CSS0007064 Camellia sinensis var. sinensis HOM05D006193 ORTHO05D007808 6.0e-15 84.3 103 41.7
Cfa001656 Carpinus fangiana HOM05D006193 ORTHO05D007808 6.0e-15 84.3 103 39.8
Cfa001990 Carpinus fangiana HOM05D006193 ORTHO05D007808 6.0e-15 84.3 103 39.8
CiPaw.02G173400 Carya illinoinensis HOM05D006193 ORTHO05D007808 7.9e-15 84.0 103 38.8
Glyma.10G210100 Glycine max HOM05D006193 ORTHO05D007808 7.9e-15 84.0 102 43.1
Phvul.007G095900 Phaseolus vulgaris HOM05D006193 ORTHO05D007808 7.9e-15 84.0 105 42.9
Sed0026653 Sechium edule HOM05D006193 ORTHO05D007808 7.9e-15 84.0 100 41.0
CAN.G108.21 Capsicum annuum HOM05D006193 ORTHO05D007808 1.0e-14 83.6 99 42.4
Haze_16878 Corylus avellana HOM05D006193 ORTHO05D007808 1.0e-14 83.6 103 39.8
HanXRQChr01g0023971 Helianthus annuus HOM05D006193 ORTHO05D007808 1.0e-14 83.6 103 40.8
HanXRQChr08g0229761 Helianthus annuus HOM05D006193 ORTHO05D007808 1.0e-14 83.6 103 40.8
unitig_37.g12308 Utricularia gibba HOM05D006193 ORTHO05D007808 1.0e-14 83.6 100 43.0
Cc02_g11260 Coffea canephora HOM05D006193 ORTHO05D007808 1.3e-14 83.2 99 43.4
Gohir.D06G175300 Gossypium hirsutum HOM05D006193 ORTHO05D007808 1.3e-14 83.2 103 40.8
Gorai.010G205700 Gossypium raimondii HOM05D006193 ORTHO05D007808 1.3e-14 83.2 103 40.8
Duzib114G0385 Durio zibethinus HOM05D006193 ORTHO05D007808 1.8e-14 82.8 103 40.8
FAN10G2131 Fragaria x ananassa HOM05D006509 ORTHO05D008144 1.8e-14 82.8 103 41.7
FAN10G3587 Fragaria x ananassa HOM05D006509 ORTHO05D007808 1.8e-14 82.8 103 41.7
Lsat_1_v5_gn_1_77620 Lactuca sativa HOM05D006193 ORTHO05D007808 1.8e-14 82.8 103 39.8
ECA248G2014 Erigeron canadensis HOM05D006193 ORTHO05D007808 2.3e-14 82.4 103 39.8
TAR369G0988 Trochodendron aralioides HOM05D006193 ORTHO05D007808 2.3e-14 82.4 100 44.0
Carub.0007s2828 Capsella rubella HOM05D006193 ORTHO05D007808 3.0e-14 82.0 103 40.8
CARHR220160 Cardamine hirsuta HOM05D006193 ORTHO05D007808 3.0e-14 82.0 103 40.8
Zm00001eb062340 Zea mays HOM05D006193 ORTHO05D007808 3.0e-14 82.0 103 42.7
MSTRG.27474 Avicennia marina HOM05D006193 ORTHO05D007808 3.9e-14 81.6 103 40.8
Thhalv10026557m.g Eutrema salsugineum HOM05D006193 ORTHO05D007808 5.1e-14 81.3 103 40.8
RcHm_v2.0_Chr1g0363061 Rosa chinensis HOM05D006193 ORTHO05D007808 5.1e-14 81.3 103 40.8
Sed0026413 Sechium edule HOM05D006193 ORTHO05D007808 5.1e-14 81.3 100 40.0
Thecc.10G076000 Theobroma cacao HOM05D006193 ORTHO05D007808 5.1e-14 81.3 103 40.8
Aa31LG9G3240 Aethionema arabicum HOM05D006193 ORTHO05D007808 6.7e-14 80.9 103 39.8
Aqoxy1G03645 Aquilegia oxysepala HOM05D006193 ORTHO05D007808 6.7e-14 80.9 103 40.8
QL08p055470 Quercus lobata HOM05D006193 ORTHO05D007808 6.7e-14 80.9 103 38.8
BcaB04g18121 Brassica carinata HOM05D006193 ORTHO05D007808 8.7e-14 80.5 103 39.8
BcaC07g37722 Brassica carinata HOM05D006193 ORTHO05D007808 8.7e-14 80.5 103 39.8
A08p10360 Brassica napus HOM05D006193 ORTHO05D007808 8.7e-14 80.5 103 39.8
BolC8t48104H Brassica oleracea HOM05D006193 ORTHO05D007808 8.7e-14 80.5 103 39.8
BraA08t33036Z Brassica rapa HOM05D006193 ORTHO05D007808 8.7e-14 80.5 103 39.8
CANSAT54G0886 Cannabis sativa HOM05D006193 ORTHO05D007808 8.7e-14 80.5 103 40.8
DCAR_016552 Daucus carota HOM05D006193 ORTHO05D007808 8.7e-14 80.5 103 38.8
CDE03G0070 Ceratophyllum demersum HOM05D006193 ORTHO05D007808 1.1e-13 80.1 103 42.7
MBI07_g44648_MAGBIO Magnolia biondii HOM05D006193 ORTHO05D007808 1.1e-13 80.1 103 42.7
Prupe.2G212200 Prunus persica HOM05D006193 ORTHO05D007808 1.1e-13 80.1 103 41.7
Sp7g11980 Schrenkiella parvula HOM05D006193 ORTHO05D007808 1.1e-13 80.1 103 39.8
AL7G42250 Arabidopsis lyrata HOM05D006193 ORTHO05D007808 1.5e-13 79.7 103 39.8
AT4G14145 Arabidopsis thaliana HOM05D006193 ORTHO05D007808 1.5e-13 79.7 103 39.8
COL.COLO4_28414 Corchorus olitorius HOM05D006193 ORTHO05D007808 1.5e-13 79.7 103 38.8
FAN03G1544 Fragaria x ananassa HOM05D006193 ORTHO05D007808 1.5e-13 79.7 97 41.2
AagrBONN_evm.TU.Sc2ySwM_228.264 Anthoceros agrestis HOM05D006193 ORTHO05D007808 2.5e-13 79.0 98 46.9
SGA_v2.0_scaffold24G10658 Striga asiatica HOM05D006193 ORTHO05D007808 3.3e-13 78.6 100 38.0
MD01G1107500 Malus domestica HOM05D006193 ORTHO05D007808 5.6e-13 77.8 103 39.8
Aqoxy1G03181 Aquilegia oxysepala HOM05D006193 ORTHO05D007808 7.4e-13 77.4 104 40.4
BraA08t34379Z Brassica rapa HOM05D006193 ORTHO05D007808 9.6e-13 77.0 103 36.9
THA.LOC104808680 Tarenaya hassleriana HOM05D006193 ORTHO05D007808 9.6e-13 77.0 103 37.9
A08p24240 Brassica napus HOM05D006193 ORTHO05D007808 2.1e-12 75.9 102 37.3
Sc20g0001780 Simmondsia chinensis HOM05D006193 ORTHO05D007808 2.1e-12 75.9 132 36.4
BcaC01g00219 Brassica carinata HOM05D006193 ORTHO05D007808 8.2e-12 73.9 103 36.9
CiPaw.16G031600 Carya illinoinensis HOM05D006193 ORTHO05D007808 1.4e-11 73.2 94 40.4
Duzib128G0799 Durio zibethinus HOM05D006193 ORTHO05D007808 5.3e-11 71.2 117 34.2
ClCG05G021080 Citrullus lanatus HOM05D006193 ORTHO05D007808 6.9e-11 70.9 129 33.3
Oeu042739.1 Olea europaea HOM05D006193 ORTHO05D007808 6.9e-11 70.9 114 36.0
Oeu014384.2 Olea europaea HOM05D006193 ORTHO05D007808 9.0e-11 70.5 130 33.8
SGA_v2.0_scaffold250G44987 Striga asiatica HOM05D006193 ORTHO05D007808 2.0e-10 69.3 96 35.4
Ca_10561_v3 Cicer arietinum L. HOM05D006193 ORTHO05D007808 3.4e-10 68.6 88 42.0
Psat6g182760 Pisum sativum HOM05D006193 ORTHO05D007808 4.5e-10 68.2 84 44.0
SMO232G0066 Selaginella moellendorffii HOM05D006193 ORTHO05D007808 4.5e-10 68.2 100 36.0
arahy.Tifrunner.gnm1.ann1.D81QGL Arachis hypogaea HOM05D006193 ORTHO05D007808 5.8e-10 67.8 82 43.9
Ah.08g217480 Amaranthus hybridus HOM05D006193 ORTHO05D007808 7.6e-10 67.4 57 56.1
arahy.Tifrunner.gnm1.ann1.N5AHK9 Arachis hypogaea HOM05D006193 ORTHO05D007808 1.3e-09 66.6 82 43.9
EL10Ac7g18239 Beta vulgaris HOM05D006193 ORTHO05D007808 1.7e-09 66.2 57 56.1
Sabra10G0173000 Salix brachista HOM05D006193 ORTHO05D007808 1.7e-09 66.2 138 31.2
AUR62001381 Chenopodium quinoa HOM05D006193 ORTHO05D007808 2.9e-09 65.5 57 52.6
MELO3C012421.2 Cucumis melo HOM05D006193 ORTHO05D007808 2.9e-09 65.5 132 30.3
SMO241G0021 Selaginella moellendorffii HOM05D006193 ORTHO05D007808 1.6e-07 59.7 98 33.7
FAN19G2294 Fragaria x ananassa HOM05D006193 ORTHO05D007808 2.3e-06 55.8 88 37.5
Rhsim03G0119300 Rhododendron simsii HOM05D006193 ORTHO05D007808 3.0e-06 55.5 177 25.4
BolC3t19959H Brassica oleracea HOM05D006193 ORTHO05D007808 5.1e-06 54.7 46 47.8


User provided reference genes

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