Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c5_19920 Physcomitrium patens HOM05D005158 ORTHO05D005510 6.5e-293 1010.0 505 100.0
Cc11_g08410 Coffea canephora HOM05D005158 ORTHO05D005510 4.9e-75 286.2 339 43.1
COL.COLO4_13149 Corchorus olitorius HOM05D005158 ORTHO05D005510 1.4e-74 284.6 378 41.5
Phvul.003G032200 Phaseolus vulgaris HOM05D005158 ORTHO05D005510 1.4e-74 284.6 344 43.9
Haze_10977 Corylus avellana HOM05D005158 ORTHO05D005510 4.2e-74 283.1 284 48.6
Actinidia36249 Actinidia chinensis HOM05D005158 ORTHO05D005510 5.5e-74 282.7 295 48.1
Duzib251G0375 Durio zibethinus HOM05D005158 ORTHO05D005510 7.1e-74 282.3 295 46.4
Lj2g0016958 Lotus japonicus HOM05D005158 ORTHO05D005510 7.1e-74 282.3 296 48.0
PSO017G1154 Papaver somniferum HOM05D005158 ORTHO05D005510 9.3e-74 282.0 295 46.4
PSO478G5200 Papaver somniferum HOM05D005158 ORTHO05D005510 1.2e-73 281.6 295 46.4
Cc11_g08400 Coffea canephora HOM05D005158 ORTHO05D005510 2.7e-73 280.4 341 41.9
Prupe.1G327200 Prunus persica HOM05D005158 ORTHO05D005510 3.5e-73 280.0 295 47.5
QL03p033448 Quercus lobata HOM05D005158 ORTHO05D005510 3.5e-73 280.0 297 46.8
SalBow8G1650 Salvia bowleyana HOM05D005158 ORTHO05D005510 4.6e-73 279.6 294 48.3
GSVIVG01008427001 Vitis vinifera HOM05D005158 ORTHO05D005510 7.9e-73 278.9 295 47.5
CiPaw.05G195800 Carya illinoinensis HOM05D005158 ORTHO05D005510 1.0e-72 278.5 297 45.1
SalBow8G5629 Salvia bowleyana HOM05D005158 ORTHO05D005510 1.3e-72 278.1 294 48.0
Potri.010G111100 Populus trichocarpa HOM05D005158 ORTHO05D005510 1.8e-72 277.7 295 46.4
TAR374G1701 Trochodendron aralioides HOM05D005158 ORTHO05D005510 2.3e-72 277.3 295 47.5
MD16G1026300 Malus domestica HOM05D005158 ORTHO05D005510 3.9e-72 276.6 295 46.8
PGR119G0382 Punica granatum HOM05D005158 ORTHO05D005510 3.9e-72 276.6 295 46.4
Cfa008628 Carpinus fangiana HOM05D005158 ORTHO05D005510 1.1e-71 275.0 282 47.5
Ciclev10015117m.g Citrus clementina HOM05D005158 ORTHO05D005510 1.1e-71 275.0 295 47.8
Sabra10G0081500 Salix brachista HOM05D005158 ORTHO05D005510 1.1e-71 275.0 295 46.4
RcHm_v2.0_Chr4g0441611 Rosa chinensis HOM05D005158 ORTHO05D005510 1.5e-71 274.6 297 47.1
Sabra15G0037900 Salix brachista HOM05D005158 ORTHO05D005510 1.5e-71 274.6 315 44.4
Lalb_Chr17g0338591 Lupinus albus HOM05D005158 ORTHO05D005510 2.5e-71 273.9 295 44.7
CSS0029988 Camellia sinensis var. sinensis HOM05D005158 ORTHO05D005510 3.3e-71 273.5 295 46.1
HanXRQChr08g0212241 Helianthus annuus HOM05D005158 ORTHO05D005510 3.3e-71 273.5 295 45.8
GSVIVG01011734001 Vitis vinifera HOM05D005158 ORTHO05D005510 3.3e-71 273.5 295 46.4
Manes.17G078700 Manihot esculenta HOM05D005158 ORTHO05D005510 7.4e-71 272.3 295 45.1
QL10p028515 Quercus lobata HOM05D005158 ORTHO05D005510 9.6e-71 271.9 356 41.0
CAN.G236.18 Capsicum annuum HOM05D005158 ORTHO05D005510 1.3e-70 271.6 295 45.8
FvH4_4g32690 Fragaria vesca HOM05D005158 ORTHO05D005510 1.3e-70 271.6 353 41.9
RcHm_v2.0_Chr7g0178481 Rosa chinensis HOM05D005158 ORTHO05D005510 1.6e-70 271.2 310 44.8
Atru.chr9.1740 Acer truncatum HOM05D005158 ORTHO05D005510 2.1e-70 270.8 295 47.1
FAN12G3950 Fragaria x ananassa HOM05D005158 ORTHO05D005510 2.1e-70 270.8 296 46.3
FAN17G2123 Fragaria x ananassa HOM05D005158 ORTHO05D005510 2.1e-70 270.8 297 46.1
HanXRQChr08g0212251 Helianthus annuus HOM05D005158 ORTHO05D005510 2.8e-70 270.4 359 39.3
Sc14g0006290 Simmondsia chinensis HOM05D005158 ORTHO05D005510 3.7e-70 270.0 293 46.8
Sc14g0007050 Simmondsia chinensis HOM05D005158 ORTHO05D005510 3.7e-70 270.0 293 46.8
Sopen05g014580 Solanum pennellii HOM05D005158 ORTHO05D005510 4.8e-70 269.6 295 45.4
MSTRG.13599 Avicennia marina HOM05D005158 ORTHO05D005510 6.2e-70 269.2 296 46.6
Eucgr.G02179 Eucalyptus grandis HOM05D005158 ORTHO05D005510 8.1e-70 268.9 293 45.4
FvH4_5g11940 Fragaria vesca HOM05D005158 ORTHO05D005510 1.1e-69 268.5 306 44.4
COL.COLO4_37683 Corchorus olitorius HOM05D000282 ORTHO05D005510 1.4e-69 268.1 295 46.1
Migut.L00352 Erythranthe guttata HOM05D005158 ORTHO05D005510 1.4e-69 268.1 312 45.5
ATR0665G468 Amborella trichopoda HOM05D005158 ORTHO05D005510 1.8e-69 267.7 295 46.1
Dinv28033 Davidia involucrata HOM05D005158 ORTHO05D005510 1.8e-69 267.7 283 46.6
CiPaw.15G143000 Carya illinoinensis HOM05D005158 ORTHO05D005510 4.0e-69 266.5 293 46.8
FAN04G1228 Fragaria x ananassa HOM05D005158 ORTHO05D005510 4.0e-69 266.5 353 41.1
MD06G1226600 Malus domestica HOM05D005158 ORTHO05D005510 4.0e-69 266.5 295 45.4
Aqoxy3G00071 Aquilegia oxysepala HOM05D005158 ORTHO05D005510 5.3e-69 266.2 293 46.4
Dinv27619 Davidia involucrata HOM05D005158 ORTHO05D005510 9.0e-69 265.4 293 44.4
Carub.0002s1765 Capsella rubella HOM05D005158 ORTHO05D005510 1.2e-68 265.0 293 44.7
Thecc.03G054800 Theobroma cacao HOM05D005158 ORTHO05D005510 1.2e-68 265.0 297 44.8
CANSAT64G2776 Cannabis sativa HOM05D005158 ORTHO05D005510 2.0e-68 264.2 297 45.5
Nn4g24217 Nelumbo nucifera HOM05D005158 ORTHO05D005510 2.0e-68 264.2 293 44.0
FvH4_5g17290 Fragaria vesca HOM05D005158 ORTHO05D005510 7.6e-68 262.3 367 39.5
FAN13G1699 Fragaria x ananassa HOM05D005158 ORTHO05D005510 7.6e-68 262.3 374 38.2
CSS0029687 Camellia sinensis var. sinensis HOM05D005158 ORTHO05D005510 1.0e-67 261.9 297 45.8
FAN18G4517 Fragaria x ananassa HOM05D005158 ORTHO05D005510 1.7e-67 261.2 314 43.3
FAN08G3331 Fragaria x ananassa HOM05D005158 ORTHO05D005510 2.2e-67 260.8 373 38.3
Ciclev10008271m.g Citrus clementina HOM05D005158 ORTHO05D005510 2.9e-67 260.4 295 45.4
Duzib205G1388 Durio zibethinus HOM05D005158 ORTHO05D005510 2.9e-67 260.4 328 41.8
AUR62014187 Chenopodium quinoa HOM05D005158 ORTHO05D005510 3.8e-67 260.0 293 45.7
Lsat_1_v5_gn_8_45001 Lactuca sativa HOM05D005158 ORTHO05D005510 8.4e-67 258.8 288 46.9
ECA233G1067 Erigeron canadensis HOM05D005158 ORTHO05D005510 1.4e-66 258.1 269 46.5
FAN18G3280 Fragaria x ananassa HOM05D005158 ORTHO05D005510 1.9e-66 257.7 323 42.1
MELO3C014995.2 Cucumis melo HOM05D005158 ORTHO05D005510 3.2e-66 256.9 297 43.4
CDE05G1850 Ceratophyllum demersum HOM05D005158 ORTHO05D005510 5.5e-66 256.1 295 44.7
CsaV3_5G015040 Cucumis sativus L. HOM05D005158 ORTHO05D005510 9.3e-66 255.4 297 43.4
Cc04_g06310 Coffea canephora HOM05D005158 ORTHO05D005510 4.6e-65 253.1 290 44.5
Haze_18844 Corylus avellana HOM05D005158 ORTHO05D005510 7.9e-65 252.3 287 44.9
MSTRG.4576 Avicennia marina HOM05D005158 ORTHO05D005510 1.8e-64 251.1 299 44.1
CSS0001942 Camellia sinensis var. sinensis HOM05D005158 ORTHO05D005510 1.8e-64 251.1 283 44.9
Sed0000270 Sechium edule HOM05D005158 ORTHO05D005510 2.3e-64 250.8 295 43.4
Migut.D01553 Erythranthe guttata HOM05D005158 ORTHO05D005510 3.0e-64 250.4 292 44.5
vmacro00408 Vaccinium macrocarpon HOM05D005158 ORTHO05D005510 3.0e-64 250.4 447 34.5
Os03g0707200 Oryza sativa ssp. japonica HOM05D005158 ORTHO05D005510 8.7e-64 248.8 282 45.4
FAN18G0401 Fragaria x ananassa HOM05D005158 ORTHO05D005510 1.9e-63 247.7 357 38.9
Ah.02g127790 Amaranthus hybridus HOM05D005158 ORTHO05D005510 3.3e-63 246.9 293 43.7
ClCG07G007220 Citrullus lanatus HOM05D005158 ORTHO05D005510 3.3e-63 246.9 297 42.4
FAN22G1395 Fragaria x ananassa HOM05D005158 ORTHO05D005510 3.3e-63 246.9 298 44.0
Hund20682 Selenicereus undatus HOM05D005158 ORTHO05D005510 2.1e-62 244.2 256 46.5
SalBow1G1317 Salvia bowleyana HOM05D005158 ORTHO05D005510 3.7e-62 243.4 283 44.9
TWI75G0580 Tripterygium wilfordii HOM05D005158 ORTHO05D005510 1.1e-61 241.9 322 41.6
Lj6A744G51 Lonicera japonica HOM05D005158 ORTHO05D005510 1.4e-61 241.5 279 45.9
Oeu046166.1 Olea europaea HOM05D005158 ORTHO05D005510 5.3e-61 239.6 295 41.4
AagrBONN_evm.TU.Sc2ySwM_344.3657 Anthoceros agrestis HOM05D005158 ORTHO05D005510 6.9e-61 239.2 252 47.2
AUR62039517 Chenopodium quinoa HOM05D005158 ORTHO05D005510 4.5e-60 236.5 350 38.9
SGA_v2.0_scaffold234G43623 Striga asiatica HOM05D005158 ORTHO05D005510 7.6e-60 235.7 296 43.9
CSS0046275 Camellia sinensis var. sinensis HOM05D005158 ORTHO05D005510 1.9e-55 221.1 248 45.2
PRCOL_00003969 Prasinoderma coloniale HOM05D005158 ORTHO05D005510 2.2e-54 217.6 301 41.9
VMungo1215G0718 Vigna mungo HOM05D005158 ORTHO05D005510 1.4e-53 214.9 330 36.4
Rhsim09G0065800 Rhododendron simsii HOM05D005158 ORTHO05D005510 3.0e-48 197.2 236 41.5
Rhsim09G0065900 Rhododendron simsii HOM05D005158 ORTHO05D005510 2.0e-47 194.5 236 40.7
Peaxi162Scf00159g01112 Petunia axillaris HOM05D005158 ORTHO05D005510 1.7e-46 191.4 236 40.3
FAN13G2578 Fragaria x ananassa HOM05D005158 ORTHO05D005510 8.2e-46 189.1 374 32.4
HPP92_016306 Vanilla planifolia HOM05D005158 ORTHO05D005510 9.1e-45 185.7 292 38.7
AUR62014186 Chenopodium quinoa HOM05D005158 ORTHO05D005510 2.9e-43 180.6 267 37.8
Prupe.5G232900 Prunus persica HOM05D005158 ORTHO05D005510 1.8e-40 171.4 192 44.8
Zm00001eb054470 Zea mays HOM05D005158 ORTHO05D005510 2.2e-38 164.5 182 44.5
SEGI_17459 Sequoiadendron giganteum HOM05D005158 ORTHO05D005510 1.1e-37 162.2 183 44.3
Dinv14415 Davidia involucrata HOM05D005158 ORTHO05D005510 3.5e-36 157.1 299 33.4
HPP92_016287 Vanilla planifolia HOM05D005158 ORTHO05D005510 2.9e-35 154.1 216 38.9
Solyc05g017900.3 Solanum lycopersicum HOM05D005158 ORTHO05D005510 6.5e-35 152.9 213 38.5
Thecc.02G284700 Theobroma cacao HOM05D005158 ORTHO05D005510 6.7e-32 142.9 207 37.7
Oeu003374.1 Olea europaea HOM05D005158 ORTHO05D005510 2.2e-30 137.9 136 47.8
Potri.008G130950 Populus trichocarpa HOM05D005158 ORTHO05D005510 4.8e-30 136.7 288 33.0
Oeu014055.2 Olea europaea HOM05D005158 ORTHO05D005510 7.0e-29 132.9 145 43.4
FAN07G0555 Fragaria x ananassa HOM05D005158 ORTHO05D005510 1.0e-27 129.0 150 44.7
Pp3c9_21990 Physcomitrium patens HOM05D005158 ORTHO05D005510 2.3e-24 117.9 307 31.3
HPP92_027195 Vanilla planifolia HOM05D005158 ORTHO05D005510 1.5e-23 115.2 186 34.9
PRCOL_00000423 Prasinoderma coloniale HOM05D005158 ORTHO05D005510 1.4e-21 108.6 209 33.5
AagrBONN_evm.TU.Sc2ySwM_368.719 Anthoceros agrestis HOM05D005158 ORTHO05D005510 5.4e-21 106.7 298 29.9
SMO118G0092 Selaginella moellendorffii HOM05D032652 ORTHO05D005510 7.0e-21 106.3 273 31.1
MCO07G148 Micromonas commoda HOM05D005158 ORTHO05D005510 1.2e-20 105.5 177 35.6
HanXRQChr08g0212291 Helianthus annuus HOM05D005158 ORTHO05D005510 2.0e-20 104.8 109 44.0
Os06g0269200 Oryza sativa ssp. japonica HOM05D005158 ORTHO05D005510 7.7e-20 102.8 86 55.8
Zm00001eb280420 Zea mays HOM05D005158 ORTHO05D005510 1.7e-19 101.7 144 38.2
Cpa.g.sc570.2 Carica papaya HOM05D005158 ORTHO05D005510 2.9e-19 100.9 121 40.5
SMO263G0001 Selaginella moellendorffii HOM05D032652 ORTHO05D005510 2.9e-19 100.9 273 30.0
Manes.06G007150 Manihot esculenta HOM05D005158 ORTHO05D005510 9.5e-18 95.9 195 31.3
Solyc05g017940.3 Solanum lycopersicum HOM05D005158 ORTHO05D005510 2.3e-16 91.3 58 69.0
DCAR_007307 Daucus carota HOM05D005158 ORTHO05D005510 4.4e-15 87.0 58 67.2
TAR622G0559 Trochodendron aralioides HOM05D005158 ORTHO05D005510 5.7e-15 86.7 58 69.0
Peaxi162Scf00159g01110 Petunia axillaris HOM05D005158 ORTHO05D005510 9.8e-15 85.9 58 67.2
Duzib068G0898 Durio zibethinus HOM05D005158 ORTHO05D005510 1.8e-13 81.6 94 46.8
MD16G1025900 Malus domestica HOM05D005158 ORTHO05D005510 5.9e-12 76.6 78 47.4
MCO04G437 Micromonas commoda HOM05D005158 ORTHO05D005510 2.3e-11 74.7 287 25.4
MCO07G404 Micromonas commoda HOM05D005158 ORTHO05D005510 1.1e-10 72.4 272 24.3
Gorai.005G131900 Gossypium raimondii HOM05D005158 ORTHO05D005510 1.5e-10 72.0 95 40.0
AagrBONN_evm.TU.Sc2ySwM_117.460 Anthoceros agrestis HOM05D005158 ORTHO05D005510 2.5e-10 71.2 252 28.2
HanXRQChr08g0212271 Helianthus annuus HOM05D005158 ORTHO05D005510 2.5e-10 71.2 62 50.0
Thecc.02G284900 Theobroma cacao HOM05D005158 ORTHO05D005510 7.3e-10 69.7 80 38.8
CBR_g49491 Chara braunii HOM05D005158 ORTHO05D005510 9.5e-10 69.3 315 25.7
Gohir.D02G122150 Gossypium hirsutum HOM05D005158 ORTHO05D005510 1.2e-09 68.9 100 38.0
C06p44960 Brassica napus HOM05D005158 ORTHO05D005510 1.6e-09 68.6 63 50.8
Pp3c15_24210 Physcomitrium patens HOM05D005158 ORTHO05D005510 5.2e-08 63.5 252 27.4
Cpa.g.sc130.33 Carica papaya HOM05D005158 ORTHO05D005510 6.8e-08 63.2 56 53.6
Prupe.5G232800 Prunus persica HOM05D005158 ORTHO05D005510 3.7e-06 57.4 84 39.3
Cre08.g372300 Chlamydomonas reinhardtii HOM05D028620 ORTHO05D005510 8.3e-06 56.2 165 27.3


User provided reference genes

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