Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c5_19550 Physcomitrium patens HOM05D004056 ORTHO05D004894 2.7e-112 408.7 210 100.0
Pp3c6_9830 Physcomitrium patens HOM05D004056 ORTHO05D004894 8.1e-72 274.2 207 72.0
DCAR_012671 Daucus carota HOM05D004056 ORTHO05D004894 2.6e-38 162.9 206 50.5
Oeu051533.1 Olea europaea HOM05D004056 ORTHO05D004894 2.9e-37 159.5 192 53.1
Hma1.2p1_0226F.1_g095370 Hydrangea macrophylla HOM05D004056 ORTHO05D004894 3.8e-37 159.1 204 51.5
CARHR218370 Cardamine hirsuta HOM05D004056 ORTHO05D004894 1.1e-36 157.5 202 49.0
Lj1A89T71 Lonicera japonica HOM05D004056 ORTHO05D004894 3.2e-36 156.0 208 47.6
HPP92_024244 Vanilla planifolia HOM05D004056 ORTHO05D004894 4.2e-36 155.6 194 48.5
MSTRG.18836 Avicennia marina HOM05D004056 ORTHO05D004894 9.3e-36 154.5 114 68.4
TAR633G1317 Trochodendron aralioides HOM05D004056 ORTHO05D004894 2.7e-35 152.9 115 69.6
Cpa.g.sc21.106 Carica papaya HOM05D004056 ORTHO05D004894 3.5e-35 152.5 225 44.9
Actinidia39428 Actinidia chinensis HOM05D004056 ORTHO05D004894 4.6e-35 152.1 117 67.5
Cfa004161 Carpinus fangiana HOM05D004056 ORTHO05D004894 4.6e-35 152.1 191 49.7
Lsat_1_v5_gn_8_89300 Lactuca sativa HOM05D004056 ORTHO05D004894 4.6e-35 152.1 115 71.3
TAR636G0170 Trochodendron aralioides HOM05D004056 ORTHO05D004894 4.6e-35 152.1 203 47.3
vmacro02784 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 4.6e-35 152.1 121 66.9
Atru.chr6.1427 Acer truncatum HOM05D004056 ORTHO05D004894 6.0e-35 151.8 184 48.4
CDE02G4431 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 6.0e-35 151.8 103 73.8
Dinv12647 Davidia involucrata HOM05D004056 ORTHO05D004894 6.0e-35 151.8 123 63.4
QL09p051117 Quercus lobata HOM05D004056 ORTHO05D004894 6.0e-35 151.8 127 63.8
vmacro14736 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 6.0e-35 151.8 114 68.4
ATR0561G205 Amborella trichopoda HOM05D004056 ORTHO05D004894 7.9e-35 151.4 214 44.4
CiPaw.01G050800 Carya illinoinensis HOM05D004056 ORTHO05D004894 7.9e-35 151.4 205 46.8
Cc01_g16690 Coffea canephora HOM05D004056 ORTHO05D004894 7.9e-35 151.4 123 64.2
Haze_15250 Corylus avellana HOM05D004056 ORTHO05D004894 7.9e-35 151.4 102 75.5
Prupe.8G198700 Prunus persica HOM05D004056 ORTHO05D004894 7.9e-35 151.4 214 46.7
VMungo1383G1286 Vigna mungo HOM05D004056 ORTHO05D004894 7.9e-35 151.4 218 45.0
arahy.Tifrunner.gnm1.ann1.2MPX2Y Arachis hypogaea HOM05D004056 ORTHO05D004894 1.0e-34 151.0 184 48.4
Nn1g07984 Nelumbo nucifera HOM05D004056 ORTHO05D004894 1.0e-34 151.0 118 66.9
Actinidia30050 Actinidia chinensis HOM05D004056 ORTHO05D004894 1.3e-34 150.6 213 48.4
CDE09G0677 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 1.3e-34 150.6 191 47.1
MD05G1171400 Malus domestica HOM05D004056 ORTHO05D004894 1.3e-34 150.6 210 46.2
CAN.G5.40 Capsicum annuum HOM05D004056 ORTHO05D004894 1.8e-34 150.2 118 64.4
Manes.13G049600 Manihot esculenta HOM05D004056 ORTHO05D004894 1.8e-34 150.2 194 48.5
Oeu057860.1 Olea europaea HOM05D004056 ORTHO05D004894 1.8e-34 150.2 130 64.6
Peaxi162Scf00068g00224 Petunia axillaris HOM05D004056 ORTHO05D004894 1.8e-34 150.2 161 56.5
Rhsim01G0253300 Rhododendron simsii HOM05D004056 ORTHO05D004894 1.8e-34 150.2 201 47.8
SalBow6G2821 Salvia bowleyana HOM05D004056 ORTHO05D004894 1.8e-34 150.2 110 70.0
SalBow6G5583 Salvia bowleyana HOM05D004056 ORTHO05D004894 1.8e-34 150.2 110 70.0
unitig_26.g9438 Utricularia gibba HOM05D004056 ORTHO05D004894 1.8e-34 150.2 201 48.8
COL.COLO4_34102 Corchorus olitorius HOM05D004056 ORTHO05D004894 2.3e-34 149.8 116 64.7
Dinv00576 Davidia involucrata HOM05D004056 ORTHO05D004894 2.3e-34 149.8 114 67.5
MBI07_g18993_MAGBIO Magnolia biondii HOM05D004056 ORTHO05D004894 2.3e-34 149.8 104 72.1
Potri.002G246100 Populus trichocarpa HOM05D004056 ORTHO05D004894 2.3e-34 149.8 105 72.4
SMO172G0031 Selaginella moellendorffii HOM05D004056 ORTHO05D004894 2.3e-34 149.8 183 52.5
MSTRG.20969 Avicennia marina HOM05D004056 ORTHO05D004894 3.0e-34 149.4 200 46.5
Nitab4.5_0001161g0130 Nicotiana tabacum HOM05D004056 ORTHO05D004894 3.0e-34 149.4 118 64.4
VMungo0331G1907 Vigna mungo HOM05D004056 ORTHO05D004894 3.0e-34 149.4 209 49.8
MD10G1159600 Malus domestica HOM05D004056 ORTHO05D004894 3.9e-34 149.1 114 65.8
Solyc09g059510.3 Solanum lycopersicum HOM05D004056 ORTHO05D004894 3.9e-34 149.1 118 64.4
Thecc.01G219700 Theobroma cacao HOM05D004056 ORTHO05D004894 3.9e-34 149.1 116 64.7
Migut.D02503 Erythranthe guttata HOM05D004056 ORTHO05D004894 5.1e-34 148.7 210 46.2
Gohir.A07G198800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 5.1e-34 148.7 102 72.5
Duzib133G0422 Durio zibethinus HOM05D004056 ORTHO05D004894 6.7e-34 148.3 102 72.5
Gohir.A07G160800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 6.7e-34 148.3 102 72.5
Gorai.001G188300 Gossypium raimondii HOM05D004056 ORTHO05D004894 6.7e-34 148.3 102 72.5
PGSC0003DMG400017485 Solanum tuberosum HOM05D004056 ORTHO05D004894 6.7e-34 148.3 103 71.8
HPP92_006215 Vanilla planifolia HOM05D004056 ORTHO05D004894 6.7e-34 148.3 128 62.5
GSVIVG01003250001 Vitis vinifera HOM05D004056 ORTHO05D004894 6.7e-34 148.3 104 72.1
Manes.12G047500 Manihot esculenta HOM05D004056 ORTHO05D004894 8.7e-34 147.9 102 73.5
TWI36G0821 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 8.7e-34 147.9 105 70.5
CiPaw.02G023900 Carya illinoinensis HOM05D004056 ORTHO05D004894 1.1e-33 147.5 114 66.7
Rhsim13G0047900 Rhododendron simsii HOM05D004056 ORTHO05D004894 1.1e-33 147.5 222 46.4
Sabra02G0187400 Salix brachista HOM05D004056 ORTHO05D004894 1.1e-33 147.5 194 47.4
TWI18G1219 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 1.1e-33 147.5 105 70.5
Dinv19168 Davidia involucrata HOM05D004056 ORTHO05D004894 1.5e-33 147.1 192 47.9
Gohir.A07G093100 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.5e-33 147.1 116 64.7
Gohir.D07G097700 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.5e-33 147.1 116 64.7
Gohir.D07G205300 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.5e-33 147.1 102 71.6
Gorai.001G231300 Gossypium raimondii HOM05D004056 ORTHO05D004894 1.5e-33 147.1 102 71.6
Lsat_1_v5_gn_5_180841 Lactuca sativa HOM05D004056 ORTHO05D004894 1.5e-33 147.1 105 72.4
Duzib138G1417 Durio zibethinus HOM05D004056 ORTHO05D004894 1.9e-33 146.7 204 46.1
Gohir.D11G145800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.9e-33 146.7 194 46.9
Gorai.007G156300 Gossypium raimondii HOM05D004056 ORTHO05D004894 1.9e-33 146.7 194 46.9
Nitab4.5_0000045g0550 Nicotiana tabacum HOM05D004056 ORTHO05D004894 1.9e-33 146.7 102 71.6
TPR.G11183 Trifolium pratense HOM05D004056 ORTHO05D004894 1.9e-33 146.7 105 70.5
Phvul.008G131500 Phaseolus vulgaris HOM05D004056 ORTHO05D004894 2.5e-33 146.4 218 44.0
Ciclev10021891m.g Citrus clementina HOM05D004056 ORTHO05D004894 3.3e-33 146.0 114 65.8
FvH4_2g18520 Fragaria vesca HOM05D004056 ORTHO05D004894 3.3e-33 146.0 199 47.2
HanXRQChr04g0108001 Helianthus annuus HOM05D004056 ORTHO05D004894 3.3e-33 146.0 103 72.8
Os02g0499000 Oryza sativa ssp. japonica HOM05D004056 ORTHO05D004894 3.3e-33 146.0 201 46.3
Ca_23224_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 4.3e-33 145.6 106 69.8
Gohir.D07G164400 Gossypium hirsutum HOM05D004056 ORTHO05D004894 4.3e-33 145.6 102 70.6
Gorai.001G105100 Gossypium raimondii HOM05D004056 ORTHO05D004894 4.3e-33 145.6 116 63.8
CANSAT01G2574 Cannabis sativa HOM05D004056 ORTHO05D004894 5.7e-33 145.2 102 70.6
Duzib211G0551 Durio zibethinus HOM05D004056 ORTHO05D004894 5.7e-33 145.2 102 71.6
TAR365G1100 Trochodendron aralioides HOM05D004056 ORTHO05D004894 5.7e-33 145.2 104 71.2
Aqoxy5G00024 Aquilegia oxysepala HOM05D004056 ORTHO05D004894 7.4e-33 144.8 126 62.7
FAN15G2777 Fragaria x ananassa HOM05D004056 ORTHO05D008391 7.4e-33 144.8 113 66.4
Sc17g0002100 Simmondsia chinensis HOM05D004056 ORTHO05D004894 7.4e-33 144.8 226 44.7
THA.LOC104804624 Tarenaya hassleriana HOM05D004056 ORTHO05D004894 7.4e-33 144.8 102 70.6
unitig_736.g22344 Utricularia gibba HOM05D004056 ORTHO05D004894 7.4e-33 144.8 136 59.6
FAN24G0472 Fragaria x ananassa HOM05D004056 ORTHO05D008391 9.6e-33 144.4 113 66.4
FAN27G1039 Fragaria x ananassa HOM05D004056 ORTHO05D004894 9.6e-33 144.4 113 66.4
HanXRQChr01g0015301 Helianthus annuus HOM05D004056 ORTHO05D004894 9.6e-33 144.4 133 60.9
Lalb_Chr19g0125861 Lupinus albus HOM05D004056 ORTHO05D004894 9.6e-33 144.4 113 67.3
Sed0026975 Sechium edule HOM05D004056 ORTHO05D004894 9.6e-33 144.4 102 72.5
MSTRG.12776 Avicennia marina HOM05D004056 ORTHO05D004894 1.6e-32 143.7 114 66.7
DCAR_018636 Daucus carota HOM05D004056 ORTHO05D004894 1.6e-32 143.7 215 43.7
Medtr8g012655 Medicago truncatula HOM05D004056 ORTHO05D004894 1.6e-32 143.7 105 71.4
arahy.Tifrunner.gnm1.ann1.8LB9ZD Arachis hypogaea HOM05D004056 ORTHO05D004894 2.1e-32 143.3 104 70.2
EL10Ac7g17907 Beta vulgaris HOM05D004056 ORTHO05D004894 2.8e-32 142.9 118 64.4
CsaV3_7G026330 Cucumis sativus L. HOM05D004056 ORTHO05D004894 2.8e-32 142.9 217 45.2
ECA248G0601 Erigeron canadensis HOM05D004056 ORTHO05D004894 2.8e-32 142.9 213 45.1
RcHm_v2.0_Chr6g0284081 Rosa chinensis HOM05D004056 ORTHO05D004894 2.8e-32 142.9 199 47.2
AL9U11310 Arabidopsis lyrata HOM05D004056 ORTHO05D004894 3.7e-32 142.5 197 45.2
Gohir.A11G139600 Gossypium hirsutum HOM05D004056 ORTHO05D004894 3.7e-32 142.5 194 46.4
AUR62016545 Chenopodium quinoa HOM05D004056 ORTHO05D004894 4.8e-32 142.1 201 46.3
BraA08t32730Z Brassica rapa HOM05D004056 ORTHO05D004894 6.2e-32 141.7 203 47.3
Lj3g0018087 Lotus japonicus HOM05D004056 ORTHO05D004894 6.2e-32 141.7 110 68.2
SGA_v2.0_scaffold18G08335 Striga asiatica HOM05D004056 ORTHO05D004894 6.2e-32 141.7 209 45.5
unitig_899.g15016 Utricularia gibba HOM05D004056 ORTHO05D004894 6.2e-32 141.7 209 45.9
TAR362G0687 Trochodendron aralioides HOM05D004056 ORTHO05D004894 1.1e-31 141.0 95 73.7
Aa31LG9G5020 Aethionema arabicum HOM05D004056 ORTHO05D004894 1.4e-31 140.6 105 68.6
ClCG09G008620 Citrullus lanatus HOM05D004056 ORTHO05D004894 1.8e-31 140.2 108 66.7
C08p08780 Brassica napus HOM05D004056 ORTHO05D004894 2.4e-31 139.8 207 46.4
Thhalv10026242m.g Eutrema salsugineum HOM05D004056 ORTHO05D004894 2.4e-31 139.8 105 67.6
Sp7g10210 Schrenkiella parvula HOM05D004056 ORTHO05D004894 4.1e-31 139.0 105 67.6
BcaC07g37403 Brassica carinata HOM05D004056 ORTHO05D004894 5.3e-31 138.7 207 45.9
BolC8t47725H Brassica oleracea HOM05D004056 ORTHO05D004894 5.3e-31 138.7 207 45.9
Glyma.08G348300 Glycine max HOM05D004056 ORTHO05D004894 5.3e-31 138.7 104 67.3
Eucgr.K02136 Eucalyptus grandis HOM05D004056 ORTHO05D004894 6.9e-31 138.3 100 69.0
PGR044G2021 Punica granatum HOM05D004056 ORTHO05D004894 6.9e-31 138.3 98 71.4
BcaB04g17724 Brassica carinata HOM05D004056 ORTHO05D004894 9.0e-31 137.9 205 43.9
Sed0002122 Sechium edule HOM05D004056 ORTHO05D004894 9.0e-31 137.9 102 68.6
ClCG07G002100 Citrullus lanatus HOM05D004056 ORTHO05D004894 1.2e-30 137.5 111 65.8
Lj1g0006098 Lotus japonicus HOM05D004056 ORTHO05D004894 1.2e-30 137.5 97 72.2
Glyma.18G159900 Glycine max HOM05D004056 ORTHO05D004894 1.5e-30 137.1 131 59.5
MD10G1039600 Malus domestica HOM05D001916 ORTHO05D004894 1.5e-30 137.1 114 62.3
A08p07180 Brassica napus HOM05D004056 ORTHO05D004894 2.0e-30 136.7 202 46.0
Hund05580 Selenicereus undatus HOM05D004056 ORTHO05D004894 2.0e-30 136.7 96 70.8
Sopen09g022670 Solanum pennellii HOM05D004056 ORTHO05D004894 2.0e-30 136.7 116 62.9
Ca_03473_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 2.6e-30 136.3 95 74.7
unitig_749.g13591 Utricularia gibba HOM05D004056 ORTHO05D004894 4.5e-30 135.6 143 54.5
AUR62001134 Chenopodium quinoa HOM05D004056 ORTHO05D004894 1.0e-29 134.4 189 45.0
Migut.N00633 Erythranthe guttata HOM05D004056 ORTHO05D004894 1.3e-29 134.0 204 42.2
TPR.G6483 Trifolium pratense HOM05D004056 ORTHO05D004894 1.3e-29 134.0 98 72.4
Zm00001eb241420 Zea mays HOM05D004056 ORTHO05D004894 1.3e-29 134.0 195 46.7
Hund18433 Selenicereus undatus HOM05D004056 ORTHO05D004894 1.7e-29 133.7 103 65.0
AT4G13040 Arabidopsis thaliana HOM05D004056 ORTHO05D004894 2.2e-29 133.3 100 69.0
Medtr7g055857 Medicago truncatula HOM05D004056 ORTHO05D004894 5.0e-29 132.1 102 68.6
MELO3C022718.2 Cucumis melo HOM05D004056 ORTHO05D004894 8.4e-29 131.3 102 67.6
Psat3g149240 Pisum sativum HOM05D004056 ORTHO05D004894 8.4e-29 131.3 102 68.6
unitig_699.g19750 Utricularia gibba HOM05D004056 ORTHO05D004894 1.1e-28 131.0 129 55.0
Sed0007046 Sechium edule HOM05D004056 ORTHO05D004894 3.2e-28 129.4 125 57.6
CsaV3_3G030040 Cucumis sativus L. HOM05D004056 ORTHO05D004894 4.2e-28 129.0 100 67.0
MELO3C028860.2 Cucumis melo HOM05D004056 ORTHO05D004894 2.1e-27 126.7 159 49.7
ECA236G1380 Erigeron canadensis HOM05D004056 ORTHO05D004894 1.0e-26 124.4 86 73.3
SMO361G0763 Selaginella moellendorffii HOM05D004056 ORTHO05D004894 6.7e-26 121.7 105 61.9
C08p08770 Brassica napus HOM05D004056 ORTHO05D004894 9.7e-25 117.9 83 71.1
BolC8t47724H Brassica oleracea HOM05D004056 ORTHO05D004894 9.7e-25 117.9 83 71.1
PSO063G1373 Papaver somniferum HOM05D004056 ORTHO05D004894 9.7e-25 117.9 102 59.8
Ah.08g214620 Amaranthus hybridus HOM05D004056 ORTHO05D004894 4.8e-24 115.5 198 41.9
PSO017G4055 Papaver somniferum HOM05D004056 ORTHO05D004894 1.1e-23 114.4 195 39.5
THA.LOC104808796 Tarenaya hassleriana HOM05D004056 ORTHO05D004894 1.8e-23 113.6 103 57.3
HanXRQChr08g0235681 Helianthus annuus HOM05D004056 ORTHO05D004894 1.1e-20 104.4 79 65.8
CSS0045016 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000018 6.1e-19 98.6 75 70.7
SGA_v2.0_scaffold6G03510 Striga asiatica HOM05D004056 ORTHO05D004894 2.3e-18 96.7 58 79.3
Carub.0007s2973 Capsella rubella HOM05D004056 ORTHO05D004894 3.0e-18 96.3 61 75.4
Psat4g203800 Pisum sativum HOM05D004056 ORTHO05D004894 1.3e-16 90.9 58 75.9
CBR_g38383 Chara braunii HOM05D004056 ORTHO05D004894 2.8e-16 89.7 95 48.4
Pp3c13_22780 Physcomitrium patens HOM05D004056 ORTHO05D004504 3.6e-11 72.8 130 40.0
Pp3c4_8660 Physcomitrium patens HOM05D004056 ORTHO05D004504 9.7e-09 64.7 85 41.2
CSS0004822 Camellia sinensis var. sinensis HOM05D004056 ORTHO05D004894 2.6e-06 56.6 57 49.1


User provided reference genes

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