Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c5_19490 Physcomitrium patens HOM05D001775 ORTHO05D006205 3.6e-54 214.5 99 100.0
Pp3c16_8850 Physcomitrium patens HOM05D001775 ORTHO05D006205 2.6e-44 181.8 99 82.8
Mapoly0001s0026 Marchantia polymorpha HOM05D001775 ORTHO05D006205 6.5e-40 167.2 97 77.3
SMO117G0070 Selaginella moellendorffii HOM05D001775 ORTHO05D006205 3.7e-35 151.4 119 62.2
SMO114G0103 Selaginella moellendorffii HOM05D001775 ORTHO05D006205 2.4e-34 148.7 98 70.4
TAR628G0191 Trochodendron aralioides HOM05D001775 ORTHO05D006205 1.0e-24 116.7 97 50.5
AagrBONN_evm.TU.Sc2ySwM_344.4857 Anthoceros agrestis HOM05D001775 ORTHO05D006205 7.3e-23 110.5 71 71.8
GSVIVG01013411001 Vitis vinifera HOM05D001775 ORTHO05D006205 7.3e-23 110.5 98 50.0
Manes.18G002900 Manihot esculenta HOM05D001775 ORTHO05D006205 1.4e-21 106.3 98 46.9
Oeu016871.1 Olea europaea HOM05D001775 ORTHO05D006205 1.4e-21 106.3 98 45.9
Ciclev10002700m.g Citrus clementina HOM05D001775 ORTHO05D006205 1.8e-21 105.9 98 48.0
CiPaw.07G134900 Carya illinoinensis HOM05D001775 ORTHO05D006205 2.3e-21 105.5 98 46.9
Oeu019572.1 Olea europaea HOM05D001775 ORTHO05D006205 2.3e-21 105.5 97 47.4
CSS0024195 Camellia sinensis var. sinensis HOM05D001775 ORTHO05D006205 3.1e-21 105.1 98 46.9
Hma1.2p1_0612F.1_g189000 Hydrangea macrophylla HOM05D001775 ORTHO05D006205 3.1e-21 105.1 98 45.9
Thecc.08G064000 Theobroma cacao HOM05D001775 ORTHO05D006205 3.1e-21 105.1 92 48.9
ATR0807G198 Amborella trichopoda HOM05D001775 ORTHO05D006205 5.2e-21 104.4 98 46.9
Cpa.g.sc26.151 Carica papaya HOM05D001775 ORTHO05D006205 5.2e-21 104.4 97 47.4
Glyma.06G015300 Glycine max HOM05D001775 ORTHO05D006205 5.2e-21 104.4 97 49.5
Cfa014124 Carpinus fangiana HOM05D001775 ORTHO05D006205 8.9e-21 103.6 92 48.9
QL02p015365 Quercus lobata HOM05D001775 ORTHO05D006205 1.5e-20 102.8 97 45.4
QL02p015396 Quercus lobata HOM05D001775 ORTHO05D006205 1.5e-20 102.8 97 45.4
FAN04G1208 Fragaria x ananassa HOM05D001775 ORTHO05D006205 2.0e-20 102.4 97 45.4
FAN08G0076 Fragaria x ananassa HOM05D001775 ORTHO05D006205 2.0e-20 102.4 97 45.4
RcHm_v2.0_Chr7g0216421 Rosa chinensis HOM05D001775 ORTHO05D006205 2.0e-20 102.4 97 46.4
Haze_22846 Corylus avellana HOM05D001775 ORTHO05D006205 2.6e-20 102.1 96 47.9
Phvul.009G007300 Phaseolus vulgaris HOM05D001775 ORTHO05D006205 2.6e-20 102.1 98 44.9
Manes.05G125900 Manihot esculenta HOM05D001775 ORTHO05D006205 3.4e-20 101.7 98 45.9
FvH4_5g25920 Fragaria vesca HOM05D001775 ORTHO05D006205 4.4e-20 101.3 97 44.3
FAN13G2435 Fragaria x ananassa HOM05D001775 ORTHO05D006205 4.4e-20 101.3 97 44.3
MBI08_g29079_MAGBIO Magnolia biondii HOM05D001775 ORTHO05D006205 4.4e-20 101.3 92 48.9
FAN18G0260 Fragaria x ananassa HOM05D001775 ORTHO05D006205 1.3e-19 99.8 92 44.6
Lj4A6T36 Lonicera japonica HOM05D001775 ORTHO05D006205 1.3e-19 99.8 92 45.7
Actinidia15517 Actinidia chinensis HOM05D001775 ORTHO05D006205 1.7e-19 99.4 91 46.2
Ca_15392_v3 Cicer arietinum L. HOM05D001775 ORTHO05D006205 1.7e-19 99.4 97 45.4
Sed0015170 Sechium edule HOM05D001775 ORTHO05D006205 1.7e-19 99.4 98 46.9
Thhalv10019232m.g Eutrema salsugineum HOM05D001775 ORTHO05D006205 2.2e-19 99.0 98 41.8
TPR.G38180 Trifolium pratense HOM05D001775 ORTHO05D006205 2.2e-19 99.0 92 45.7
CANSAT25G3735 Cannabis sativa HOM05D001775 ORTHO05D006205 3.7e-19 98.2 92 46.7
Gohir.A05G177800 Gossypium hirsutum HOM05D001775 ORTHO05D006205 3.7e-19 98.2 92 44.6
Gohir.D05G181200 Gossypium hirsutum HOM05D001775 ORTHO05D006205 3.7e-19 98.2 92 44.6
PSO541G5829 Papaver somniferum HOM05D001775 ORTHO05D006205 3.7e-19 98.2 98 43.9
Cc10_g00340 Coffea canephora HOM05D001775 ORTHO05D006205 4.9e-19 97.8 92 45.7
Eucgr.F01803 Eucalyptus grandis HOM05D001775 ORTHO05D006205 4.9e-19 97.8 96 46.9
Gorai.009G186200 Gossypium raimondii HOM05D001775 ORTHO05D006205 4.9e-19 97.8 92 44.6
PSO675G2258 Papaver somniferum HOM05D001775 ORTHO05D006205 4.9e-19 97.8 98 43.9
Sp5g31560 Schrenkiella parvula HOM05D001775 ORTHO05D006205 6.4e-19 97.4 98 40.8
PRCOL_00001546 Prasinoderma coloniale HOM05D001775 ORTHO05D006205 8.3e-19 97.1 99 43.4
BcaC08g47138 Brassica carinata HOM05D001775 ORTHO05D006205 1.4e-18 96.3 98 40.8
ClCG08G009240 Citrullus lanatus HOM05D001775 ORTHO05D006205 1.4e-18 96.3 98 44.9
Hund05085 Selenicereus undatus HOM05D001775 ORTHO05D006205 1.4e-18 96.3 98 41.8
BcaB02g07061 Brassica carinata HOM05D001775 ORTHO05D006205 1.9e-18 95.9 98 41.8
BcaC08g47254 Brassica carinata HOM05D001775 ORTHO05D006205 1.9e-18 95.9 98 40.8
A07p42030 Brassica napus HOM05D001775 ORTHO05D006205 1.9e-18 95.9 98 40.8
C06p50600 Brassica napus HOM05D001775 ORTHO05D006205 1.9e-18 95.9 98 40.8
BolC6t40085H Brassica oleracea HOM05D001775 ORTHO05D006205 1.9e-18 95.9 98 40.8
BraA07t31733Z Brassica rapa HOM05D001775 ORTHO05D006205 1.9e-18 95.9 98 40.8
SGA_v2.0_scaffold133G34600 Striga asiatica HOM05D001775 ORTHO05D006205 2.4e-18 95.5 98 41.8
CARHR069960 Cardamine hirsuta HOM05D001775 ORTHO05D006205 3.2e-18 95.1 98 40.8
Medtr3g115990 Medicago truncatula HOM05D001775 ORTHO05D006205 3.2e-18 95.1 97 44.3
THA.LOC104813743 Tarenaya hassleriana HOM05D001775 ORTHO05D006205 3.2e-18 95.1 98 39.8
Potri.005G255100 Populus trichocarpa HOM05D001775 ORTHO05D006205 5.4e-18 94.4 92 41.3
Sp1g18510 Schrenkiella parvula HOM05D001775 ORTHO05D006205 5.4e-18 94.4 98 39.8
CBR_g44541 Chara braunii HOM05D001775 ORTHO05D006205 7.0e-18 94.0 97 46.4
Thhalv10008937m.g Eutrema salsugineum HOM05D001775 ORTHO05D006205 7.0e-18 94.0 97 41.2
Aa31LG4G6480 Aethionema arabicum HOM05D001775 ORTHO05D006205 9.2e-18 93.6 94 41.5
BcaC08g45531 Brassica carinata HOM05D001775 ORTHO05D006205 1.6e-17 92.8 97 41.2
C06p32060 Brassica napus HOM05D001775 ORTHO05D006205 1.6e-17 92.8 97 41.2
BolC6t38332H Brassica oleracea HOM05D001775 ORTHO05D006205 1.6e-17 92.8 97 41.2
Carub.0002s2331 Capsella rubella HOM05D001775 ORTHO05D006205 1.6e-17 92.8 98 38.8
BcaC05g25983 Brassica carinata HOM05D001775 ORTHO05D006205 2.0e-17 92.4 92 42.4
C05p19360 Brassica napus HOM05D001775 ORTHO05D009111 2.0e-17 92.4 92 42.4
BolC5t30639H Brassica oleracea HOM05D001775 ORTHO05D006205 2.0e-17 92.4 92 42.4
CAN.G1330.2 Capsicum annuum HOM05D001775 ORTHO05D006205 2.0e-17 92.4 98 41.8
THA.LOC104811999 Tarenaya hassleriana HOM05D001775 ORTHO05D006205 2.0e-17 92.4 98 39.8
TWI12G0153 Tripterygium wilfordii HOM05D001775 ORTHO05D006205 2.0e-17 92.4 98 41.8
arahy.Tifrunner.gnm1.ann1.62LGBX Arachis hypogaea HOM05D001775 ORTHO05D006205 3.5e-17 91.7 98 41.8
arahy.Tifrunner.gnm1.ann1.NA36AX Arachis hypogaea HOM05D001775 ORTHO05D006205 3.5e-17 91.7 98 41.8
EL10Ac1g01895 Beta vulgaris HOM05D001775 ORTHO05D006205 3.5e-17 91.7 98 39.8
MELO3C026523.2 Cucumis melo HOM05D001775 ORTHO05D006205 3.5e-17 91.7 91 45.1
DCAR_016792 Daucus carota HOM05D001775 ORTHO05D006205 3.5e-17 91.7 92 44.6
AT1G76405 Arabidopsis thaliana HOM05D001775 ORTHO05D006205 4.6e-17 91.3 98 38.8
CARHR021240 Cardamine hirsuta HOM05D001775 ORTHO05D006205 4.6e-17 91.3 98 39.8
A07p28510 Brassica napus HOM05D001775 ORTHO05D006205 6.0e-17 90.9 99 41.4
AT1G20816 Arabidopsis thaliana HOM05D001775 ORTHO05D006205 7.8e-17 90.5 98 39.8
A06p16800 Brassica napus HOM05D001775 ORTHO05D009111 7.8e-17 90.5 92 41.3
BcaB07g32074 Brassica carinata HOM05D001775 ORTHO05D006205 1.0e-16 90.1 92 40.2
BraA07t30489Z Brassica rapa HOM05D001775 ORTHO05D006205 1.0e-16 90.1 98 41.8
AUR62024107 Chenopodium quinoa HOM05D001775 ORTHO05D006205 1.0e-16 90.1 98 40.8
AUR62035157 Chenopodium quinoa HOM05D001775 ORTHO05D006205 1.0e-16 90.1 98 40.8
CsaV3_6G031380 Cucumis sativus L. HOM05D001775 ORTHO05D006205 1.0e-16 90.1 91 44.0
AL2G36510 Arabidopsis lyrata HOM05D001775 ORTHO05D006205 1.3e-16 89.7 92 40.2
BraA06t24788Z Brassica rapa HOM05D001775 ORTHO05D006205 1.3e-16 89.7 92 41.3
Migut.C00377 Erythranthe guttata HOM05D001775 ORTHO05D006205 1.3e-16 89.7 92 44.6
SalBow7G0166 Salvia bowleyana HOM05D001775 ORTHO05D006205 1.3e-16 89.7 92 44.6
AagrBONN_evm.TU.Sc2ySwM_362.1823 Anthoceros agrestis HOM05D001775 ORTHO05D006205 1.7e-16 89.4 92 44.6
AL1G33820 Arabidopsis lyrata HOM05D001775 ORTHO05D006205 2.3e-16 89.0 98 38.8
Peaxi162Scf00680g00415 Petunia axillaris HOM05D001775 ORTHO05D006205 2.3e-16 89.0 98 40.8
HPP92_015233 Vanilla planifolia HOM05D001775 ORTHO05D006205 2.3e-16 89.0 93 37.6
MSTRG.24916 Avicennia marina HOM05D001775 ORTHO05D006205 3.0e-16 88.6 93 43.0
Lalb_Chr11g0061401 Lupinus albus HOM05D001775 ORTHO05D006205 3.0e-16 88.6 92 44.6
Carub.0001s2027 Capsella rubella HOM05D001775 ORTHO05D006205 3.9e-16 88.2 98 37.8
MD06G1005500 Malus domestica HOM05D001775 ORTHO05D006205 3.9e-16 88.2 98 39.8
Prupe.5G006800 Prunus persica HOM05D001775 ORTHO05D006205 3.9e-16 88.2 93 40.9
Hund01795 Selenicereus undatus HOM05D001775 ORTHO05D006205 3.9e-16 88.2 98 38.8
CDE05G0091 Ceratophyllum demersum HOM05D001775 ORTHO05D006205 5.0e-16 87.8 73 50.7
Lsat_1_v5_gn_2_1320 Lactuca sativa HOM05D001775 ORTHO05D006205 5.0e-16 87.8 98 39.8
HanXRQChr14g0427901 Helianthus annuus HOM05D001775 ORTHO05D006205 6.6e-16 87.4 97 38.1
Sc02g0009220 Simmondsia chinensis HOM05D005712 ORTHO05D007865 6.6e-16 87.4 83 44.6
Nn5g31022 Nelumbo nucifera HOM05D001775 ORTHO05D006205 1.1e-15 86.7 105 43.8
Dinv31976 Davidia involucrata HOM05D001775 ORTHO05D000295 4.3e-15 84.7 74 47.3
MCO07G511 Micromonas commoda HOM05D001775 ORTHO05D006205 4.3e-15 84.7 93 45.2
Duzib116G0384 Durio zibethinus HOM05D001775 ORTHO05D006205 7.3e-15 84.0 78 46.2
ECA238G0508 Erigeron canadensis HOM05D001775 ORTHO05D006205 9.5e-15 83.6 97 38.1
Sabra05G0197600 Salix brachista HOM05D001775 ORTHO05D006205 9.5e-15 83.6 92 41.3
Nitab4.5_0001756g0150 Nicotiana tabacum HOM05D001775 ORTHO05D006205 1.2e-14 83.2 99 40.4
Nitab4.5_0029491g0010 Nicotiana tabacum HOM05D001775 ORTHO05D006205 1.2e-14 83.2 99 40.4
vmacro21778 Vaccinium macrocarpon HOM05D001775 ORTHO05D006205 1.2e-14 83.2 135 31.9
Rhsim06G0004200 Rhododendron simsii HOM05D001775 ORTHO05D006205 2.1e-14 82.4 124 33.1
HanXRQChr05g0144711 Helianthus annuus HOM05D001775 ORTHO05D006205 8.1e-14 80.5 98 34.7
Solyc04g082680.3 Solanum lycopersicum HOM05D001775 ORTHO05D006205 8.1e-14 80.5 99 39.4
PGR083G1854 Punica granatum HOM05D001775 ORTHO05D006205 1.1e-13 80.1 108 38.0
Sopen04g036310 Solanum pennellii HOM05D001775 ORTHO05D006205 1.1e-13 80.1 99 39.4
Ah.00g001090 Amaranthus hybridus HOM05D001775 ORTHO05D006205 1.8e-13 79.3 94 38.3
ECA232G0408 Erigeron canadensis HOM05D000593 ORTHO05D006205 3.1e-13 78.6 92 35.9
HanXRQChr15g0492581 Helianthus annuus HOM05D001775 ORTHO05D006205 3.1e-13 78.6 98 35.7
PGSC0003DMG400009918 Solanum tuberosum HOM05D001775 ORTHO05D006205 4.0e-13 78.2 99 38.4
Os02g0832200 Oryza sativa ssp. japonica HOM05D001775 ORTHO05D006205 2.2e-11 72.4 93 38.7
Zm00001eb259570 Zea mays HOM05D001775 ORTHO05D006205 2.9e-11 72.0 89 37.1
TWI56G1014 Tripterygium wilfordii HOM05D001775 ORTHO05D006205 4.9e-11 71.2 131 31.3
Duzib041G0706 Durio zibethinus HOM05D001775 ORTHO05D006205 6.4e-11 70.9 60 45.0
Lsat_1_v5_gn_9_41801 Lactuca sativa HOM05D001775 ORTHO05D006205 8.3e-11 70.5 92 31.5
unitig_0.g2075 Utricularia gibba HOM05D001775 ORTHO05D006205 1.1e-10 70.1 120 33.3
Atru.chr13.81 Acer truncatum HOM05D001775 ORTHO05D006205 7.1e-10 67.4 68 44.1
arahy.Tifrunner.gnm1.ann1.3KDH9X Arachis hypogaea HOM05D001775 ORTHO05D006205 7.1e-10 67.4 77 39.0
SEGI_34722 Sequoiadendron giganteum HOM05D001775 ORTHO05D006205 7.1e-10 67.4 38 73.7
Psat5g008840 Pisum sativum HOM05D001775 ORTHO05D006205 1.0e-08 63.5 69 42.0
CDE05G0488 Ceratophyllum demersum HOM05D001775 ORTHO05D006205 3.9e-08 61.6 70 34.3
Rhsim06G0004000 Rhododendron simsii HOM05D005712 ORTHO05D007865 8.6e-08 60.5 66 36.4
COL.COLO4_36626 Corchorus olitorius HOM05D001775 ORTHO05D006205 9.5e-07 57.0 64 39.1
Nitab4.5_0005347g0040 Nicotiana tabacum HOM05D001775 ORTHO05D006205 2.8e-06 55.5 51 43.1


User provided reference genes

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