Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c5_19250 Physcomitrium patens HOM05D005329 ORTHO05D006858 2.0e-270 935.3 490 100.0
Pp3c6_11200 Physcomitrium patens HOM05D005329 ORTHO05D006858 3.0e-194 682.2 492 75.8
AagrBONN_evm.TU.Sc2ySwM_228.5763 Anthoceros agrestis HOM05D005329 ORTHO05D006858 5.8e-121 438.7 317 69.4
Mapoly0037s0028 Marchantia polymorpha HOM05D005329 ORTHO05D006858 1.3e-120 437.6 516 52.1
SMO118G0360 Selaginella moellendorffii HOM05D005329 ORTHO05D006858 3.1e-114 416.4 303 67.7
SEGI_35106 Sequoiadendron giganteum HOM05D005329 ORTHO05D006858 1.9e-111 407.1 303 66.7
GSVIVG01027681001 Vitis vinifera HOM05D005329 ORTHO05D006858 9.2e-111 404.8 306 66.3
Lj6g0011922 Lotus japonicus HOM05D005329 ORTHO05D006858 1.2e-110 404.4 338 62.1
AUR62034758 Chenopodium quinoa HOM05D005329 ORTHO05D006858 2.7e-110 403.3 349 59.6
COL.COLO4_12491 Corchorus olitorius HOM05D005329 ORTHO05D006858 3.5e-110 402.9 358 58.7
Duzib133G0265 Durio zibethinus HOM05D005329 ORTHO05D006858 1.0e-109 401.4 350 59.7
Gohir.D07G152900 Gossypium hirsutum HOM05D005329 ORTHO05D006858 1.3e-109 401.0 348 59.8
Hma1.2p1_0072F.1_g038340 Hydrangea macrophylla HOM05D005329 ORTHO05D006858 1.3e-109 401.0 333 61.3
SGA_v2.0_scaffold153G36970 Striga asiatica HOM05D005329 ORTHO05D006858 1.7e-109 400.6 408 55.6
Eucgr.E01511 Eucalyptus grandis HOM05D005329 ORTHO05D006858 3.0e-109 399.8 346 61.3
Gorai.001G175000 Gossypium raimondii HOM05D005329 ORTHO05D006858 3.9e-109 399.4 348 59.5
Cfa011170 Carpinus fangiana HOM05D005329 ORTHO05D006858 5.1e-109 399.1 397 55.4
Phvul.006G076100 Phaseolus vulgaris HOM05D005329 ORTHO05D006858 8.6e-109 398.3 312 64.4
Atru.chr5.253 Acer truncatum HOM05D005329 ORTHO05D006858 1.5e-108 397.5 397 55.4
VMungo0540G2212 Vigna mungo HOM05D005329 ORTHO05D006858 1.5e-108 397.5 312 64.7
Aqoxy7G00752 Aquilegia oxysepala HOM05D005329 ORTHO05D006858 1.9e-108 397.1 298 66.8
Thecc.01G382500 Theobroma cacao HOM05D005329 ORTHO05D006858 1.9e-108 397.1 353 58.9
ATR0807G181 Amborella trichopoda HOM05D005329 ORTHO05D006858 2.5e-108 396.7 298 65.8
Manes.01G269000 Manihot esculenta HOM05D005329 ORTHO05D006858 3.3e-108 396.4 306 63.7
Potri.014G060100 Populus trichocarpa HOM05D005329 ORTHO05D006858 3.3e-108 396.4 346 59.5
CANSAT56G1088 Cannabis sativa HOM05D005329 ORTHO05D006858 4.3e-108 396.0 325 63.4
Nitab4.5_0012722g0010 Nicotiana tabacum HOM05D005329 ORTHO05D006858 5.6e-108 395.6 330 60.9
CBR_g46453 Chara braunii HOM05D005329 ORTHO05D006858 7.3e-108 395.2 297 63.3
TWI23G1139 Tripterygium wilfordii HOM05D005329 ORTHO05D006858 9.6e-108 394.8 398 55.3
Medtr3g466380 Medicago truncatula HOM05D005329 ORTHO05D006858 1.2e-107 394.4 322 62.1
Ah.04g166190 Amaranthus hybridus HOM05D005329 ORTHO05D006858 1.6e-107 394.0 313 63.3
Nitab4.5_0000859g0250 Nicotiana tabacum HOM05D005329 ORTHO05D006858 1.6e-107 394.0 330 60.9
CsaV3_6G009150 Cucumis sativus L. HOM05D005329 ORTHO05D006858 2.1e-107 393.7 361 59.8
Prupe.2G138300 Prunus persica HOM05D005329 ORTHO05D006858 2.1e-107 393.7 347 60.8
CANSAT56G2474 Cannabis sativa HOM05D005329 ORTHO05D006858 2.8e-107 393.3 325 62.8
Ca_15027_v3 Cicer arietinum L. HOM05D005329 ORTHO05D006858 3.6e-107 392.9 326 62.0
TPR.G24981 Trifolium pratense HOM05D005329 ORTHO05D006858 3.6e-107 392.9 315 62.2
MELO3C021145.2 Cucumis melo HOM05D005329 ORTHO05D006858 4.7e-107 392.5 360 59.4
Rhsim07G0031000 Rhododendron simsii HOM05D005329 ORTHO05D006858 4.7e-107 392.5 321 62.3
Sc24g0004030 Simmondsia chinensis HOM05D005329 ORTHO05D006858 4.7e-107 392.5 313 63.9
PSO210G1941 Papaver somniferum HOM05D005329 ORTHO05D006858 6.2e-107 392.1 338 58.9
Peaxi162Scf00803g00018 Petunia axillaris HOM05D005329 ORTHO05D006858 6.2e-107 392.1 351 60.1
CSS0046286 Camellia sinensis var. sinensis HOM05D005329 ORTHO05D006858 8.1e-107 391.7 313 63.3
PGR142G4306 Punica granatum HOM05D005329 ORTHO05D006858 8.1e-107 391.7 303 66.0
arahy.Tifrunner.gnm1.ann1.UJ6N0S Arachis hypogaea HOM05D005329 ORTHO05D006858 1.1e-106 391.3 351 58.7
Sopen01g036670 Solanum pennellii HOM05D005329 ORTHO05D006858 1.1e-106 391.3 316 63.9
MD07G1115700 Malus domestica HOM05D005329 ORTHO05D006858 1.4e-106 391.0 306 65.4
TAR375G0089 Trochodendron aralioides HOM05D005329 ORTHO05D006858 1.4e-106 391.0 401 54.4
FAN06G0681 Fragaria x ananassa HOM05D005329 ORTHO05D006858 2.4e-106 390.2 306 63.4
FAN06G1173 Fragaria x ananassa HOM05D005329 ORTHO05D006858 2.4e-106 390.2 306 63.4
SalBow5G1302 Salvia bowleyana HOM05D005329 ORTHO05D006858 2.4e-106 390.2 301 65.1
vmacro13440 Vaccinium macrocarpon HOM05D005329 ORTHO05D006858 2.4e-106 390.2 333 60.1
RcHm_v2.0_Chr1g0349131 Rosa chinensis HOM05D005329 ORTHO05D006858 3.1e-106 389.8 303 64.4
Lalb_Chr20g0117361 Lupinus albus HOM05D005329 ORTHO05D006858 4.0e-106 389.4 370 57.3
CAN.G1469.16 Capsicum annuum HOM05D005329 ORTHO05D006858 6.8e-106 388.7 311 63.0
FAN03G0115 Fragaria x ananassa HOM05D005329 ORTHO05D006858 8.9e-106 388.3 306 63.1
Nn6g33989 Nelumbo nucifera HOM05D005329 ORTHO05D006858 8.9e-106 388.3 341 60.4
Solyc01g090940.3 Solanum lycopersicum HOM05D005329 ORTHO05D006858 8.9e-106 388.3 308 63.3
Glyma.11G161400 Glycine max HOM05D005329 ORTHO05D006858 1.2e-105 387.9 331 60.7
CiPaw.14G025800 Carya illinoinensis HOM05D005329 ORTHO05D006858 2.0e-105 387.1 421 52.0
FAN10G0345 Fragaria x ananassa HOM05D005329 ORTHO05D006858 2.0e-105 387.1 346 58.4
FAN10G0671 Fragaria x ananassa HOM05D005329 ORTHO05D006858 2.0e-105 387.1 346 58.4
Psat5g150560 Pisum sativum HOM05D005329 ORTHO05D006858 2.6e-105 386.7 303 63.7
Migut.B01596 Erythranthe guttata HOM05D005329 ORTHO05D006858 3.4e-105 386.3 407 53.6
Sed0016036 Sechium edule HOM05D005329 ORTHO05D006858 3.4e-105 386.3 306 63.1
Glyma.18G055100 Glycine max HOM05D005329 ORTHO05D006858 5.8e-105 385.6 390 54.6
Ciclev10020384m.g Citrus clementina HOM05D005329 ORTHO05D006858 7.6e-105 385.2 312 62.5
Dinv44120 Davidia involucrata HOM05D005329 ORTHO05D006858 7.6e-105 385.2 318 61.6
CBR_g3184 Chara braunii HOM05D005329 ORTHO05D006858 1.7e-104 384.0 304 62.2
Sp4g27210 Schrenkiella parvula HOM05D005329 ORTHO05D006858 1.7e-104 384.0 303 62.7
EL10Ac4g07683 Beta vulgaris HOM05D005329 ORTHO05D006858 2.2e-104 383.6 383 52.7
THA.LOC104817220 Tarenaya hassleriana HOM05D005329 ORTHO05D006858 2.2e-104 383.6 357 57.7
arahy.Tifrunner.gnm1.ann1.6F7D9A Arachis hypogaea HOM05D005329 ORTHO05D006858 3.8e-104 382.9 370 55.9
MSTRG.20729 Avicennia marina HOM05D005329 ORTHO05D006858 8.4e-104 381.7 353 56.9
Carub.0004s2776 Capsella rubella HOM05D005329 ORTHO05D006858 1.1e-103 381.3 331 57.7
Cc02_g24400 Coffea canephora HOM05D005329 ORTHO05D006858 1.1e-103 381.3 333 59.8
Thhalv10001472m.g Eutrema salsugineum HOM05D005329 ORTHO05D006858 1.1e-103 381.3 303 61.7
Gohir.A07G146900 Gossypium hirsutum HOM05D005329 ORTHO05D006858 5.4e-103 379.0 335 59.1
AL4G44260 Arabidopsis lyrata HOM05D005329 ORTHO05D006858 1.6e-102 377.5 415 50.6
ECA236G3830 Erigeron canadensis HOM05D005329 ORTHO05D006858 2.1e-102 377.1 301 64.5
BcaB01g03288 Brassica carinata HOM05D005329 ORTHO05D006858 2.7e-102 376.7 303 61.7
AT2G45150 Arabidopsis thaliana HOM05D005329 ORTHO05D006858 3.5e-102 376.3 354 54.8
unitig_8.g3829 Utricularia gibba HOM05D005329 ORTHO05D006858 7.8e-102 375.2 301 61.8
AT3G60620 Arabidopsis thaliana HOM05D005329 ORTHO05D006858 1.0e-101 374.8 346 56.1
HanXRQChr06g0169081 Helianthus annuus HOM05D005329 ORTHO05D006858 1.3e-101 374.4 301 63.8
Sabra14G0044000 Salix brachista HOM05D005329 ORTHO05D006858 5.1e-101 372.5 367 55.0
Sp5g02620 Schrenkiella parvula HOM05D005329 ORTHO05D006858 5.1e-101 372.5 390 54.1
BcaC01g05155 Brassica carinata HOM05D005329 ORTHO05D006858 1.5e-100 370.9 313 58.8
Carub.0005s2735 Capsella rubella HOM05D005329 ORTHO05D006858 2.5e-100 370.2 349 55.3
Zm00001eb208740 Zea mays HOM05D005329 ORTHO05D006858 4.3e-100 369.4 302 62.3
HanXRQChr04g0123141 Helianthus annuus HOM05D005329 ORTHO05D006858 2.8e-99 366.7 327 58.4
Zm00001eb230950 Zea mays HOM05D005329 ORTHO05D006858 3.6e-99 366.3 302 61.9
Lsat_1_v5_gn_7_9240 Lactuca sativa HOM05D005329 ORTHO05D006858 1.4e-98 364.4 338 56.8
QL04p038735 Quercus lobata HOM05D005329 ORTHO05D006858 2.4e-98 363.6 401 49.6
Thhalv10006014m.g Eutrema salsugineum HOM05D005329 ORTHO05D006858 3.1e-98 363.2 392 53.8
FAN01G1917 Fragaria x ananassa HOM05D005329 ORTHO05D006858 2.0e-97 360.5 306 60.1
ClCG06G003040 Citrullus lanatus HOM05D005329 ORTHO05D006858 4.4e-97 359.4 417 49.2
C08p35570 Brassica napus HOM05D005329 ORTHO05D006858 1.7e-96 357.5 330 57.3
Aa31LG10G14910 Aethionema arabicum HOM05D005329 ORTHO05D006858 1.1e-95 354.8 397 51.1
ECA236G1715 Erigeron canadensis HOM05D005329 ORTHO05D006858 2.4e-95 353.6 281 64.8
A09p52830 Brassica napus HOM05D005329 ORTHO05D006858 3.2e-95 353.2 367 53.7
C03p29890 Brassica napus HOM05D005329 ORTHO05D006858 1.2e-94 351.3 313 56.9
BolC3t15336H Brassica oleracea HOM05D005329 ORTHO05D006858 1.2e-94 351.3 313 56.9
BraA09t40715Z Brassica rapa HOM05D005329 ORTHO05D006858 2.7e-94 350.1 380 52.4
A03p25050 Brassica napus HOM05D005329 ORTHO05D006858 6.0e-94 349.0 304 58.6
BraA03t11707Z Brassica rapa HOM05D005329 ORTHO05D006858 6.0e-94 349.0 304 58.6
CDE04G3112 Ceratophyllum demersum HOM05D005329 ORTHO05D006858 6.0e-94 349.0 328 55.2
BolC8t51147H Brassica oleracea HOM05D005329 ORTHO05D006858 1.0e-93 348.2 477 44.2
PGSC0003DMG400026014 Solanum tuberosum HOM05D005329 ORTHO05D006858 4.3e-92 342.8 290 61.0
CSS0025552 Camellia sinensis var. sinensis HOM05D005329 ORTHO05D006858 9.6e-92 341.7 268 63.1
Actinidia12186 Actinidia chinensis HOM05D005329 ORTHO05D006858 6.2e-91 339.0 313 57.2
BcaC07g40582 Brassica carinata HOM05D005329 ORTHO05D006858 8.1e-91 338.6 345 55.1
Haze_02679 Corylus avellana HOM05D005329 ORTHO05D006858 2.6e-89 333.6 540 40.7
Oeu005823.1 Olea europaea HOM05D005329 ORTHO05D006858 1.1e-87 328.2 310 54.5
FvH4_7g11110 Fragaria vesca HOM05D005329 ORTHO05D006858 1.9e-87 327.4 244 66.0
DCAR_015887 Daucus carota HOM05D005329 ORTHO05D006858 2.8e-83 313.5 355 49.0
Lj7A535G33 Lonicera japonica HOM05D005329 ORTHO05D006858 1.8e-82 310.8 342 52.0
Aa31LG1G26700 Aethionema arabicum HOM05D005329 ORTHO05D006858 2.2e-80 303.9 303 53.1
HPP92_022438 Vanilla planifolia HOM05D005329 ORTHO05D006858 2.5e-79 300.4 297 51.9
Duzib138G0318 Durio zibethinus HOM05D005329 ORTHO05D006858 6.7e-77 292.4 281 54.1
Dinv43674 Davidia involucrata HOM05D005329 ORTHO05D006858 1.2e-73 281.6 281 53.4
Actinidia22816 Actinidia chinensis HOM05D005329 ORTHO05D006858 2.6e-73 280.4 345 46.7
Hund22462 Selenicereus undatus HOM05D005329 ORTHO05D006858 5.9e-73 279.3 375 46.7
MD02G1210300 Malus domestica HOM05D005329 ORTHO05D006858 1.6e-70 271.2 294 52.0
unitig_31.g34043 Utricularia gibba HOM05D005329 ORTHO05D006858 1.5e-68 264.6 290 50.3
Cre12.g489050 Chlamydomonas reinhardtii HOM05D005329 ORTHO05D006858 1.8e-66 257.7 323 44.6
Actinidia22760 Actinidia chinensis HOM05D005329 ORTHO05D006858 5.9e-65 252.7 218 56.9
PRCOL_00006057 Prasinoderma coloniale HOM05D005329 ORTHO05D006858 9.1e-50 202.2 309 41.7
MBI04_g41909_MAGBIO Magnolia biondii HOM05D005329 ORTHO05D006858 2.6e-49 200.7 191 57.1
MCO03G003 Micromonas commoda HOM05D005329 ORTHO05D006858 4.2e-47 193.4 313 35.8
AUR62044468 Chenopodium quinoa HOM05D005329 ORTHO05D006858 9.4e-47 192.2 193 51.8
CARHR171010 Cardamine hirsuta HOM05D005329 ORTHO05D006858 8.8e-45 185.7 199 51.3
MBI04_g41908_MAGBIO Magnolia biondii HOM05D005329 ORTHO05D006858 3.3e-44 183.7 153 58.2
Cpa.g.c30654 Carica papaya HOM05D005329 ORTHO05D006858 1.2e-36 158.7 134 60.4
ECA027G0001 Erigeron canadensis HOM05D000446 ORTHO05D000321 3.7e-27 127.1 179 47.5
Cpa.g.sc49.156 Carica papaya HOM05D005329 ORTHO05D006858 5.4e-26 123.2 99 61.6
A04p01540 Brassica napus HOM05D005329 ORTHO05D041517 4.9e-11 73.6 49 73.5
Actinidia31424 Actinidia chinensis HOM05D005329 ORTHO05D030836 1.0e-08 65.9 110 40.9
Thhalv10026913m.g Eutrema salsugineum HOM05D002455 ORTHO05D002816 7.3e-07 59.7 152 32.2
BraA04t15874Z Brassica rapa HOM05D005329 ORTHO05D041517 2.8e-06 57.8 51 58.8
Cfa027324 Carpinus fangiana HOM05D002455 ORTHO05D002816 2.8e-06 57.8 194 26.3


User provided reference genes

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