Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c5_190 Physcomitrium patens HOM05D004228 ORTHO05D005137 0.0e+00 1561.2 771 100.0
Mapoly0059s0059 Marchantia polymorpha HOM05D004228 ORTHO05D005137 1.9e-299 1032.3 755 68.5
Potri.003G185951 Populus trichocarpa HOM05D004228 ORTHO05D005137 1.1e-291 1006.5 769 64.8
Potri.003G185600 Populus trichocarpa HOM05D004228 ORTHO05D005137 1.9e-291 1005.7 769 64.9
Potri.003G185776 Populus trichocarpa HOM05D004228 ORTHO05D005137 1.9e-291 1005.7 769 64.8
MSTRG.13911 Avicennia marina HOM05D004228 ORTHO05D005137 3.9e-289 998.0 765 63.1
Thecc.06G048200 Theobroma cacao HOM05D004228 ORTHO05D005137 1.5e-288 996.1 765 63.9
FvH4_6g28160 Fragaria vesca HOM05D004228 ORTHO05D005137 2.5e-288 995.3 770 63.9
HanXRQChr13g0411161 Helianthus annuus HOM05D004228 ORTHO05D005137 9.6e-288 993.4 760 63.9
GSVIVG01016092001 Vitis vinifera HOM05D004228 ORTHO05D005137 2.8e-287 991.9 757 64.5
ECA233G3708 Erigeron canadensis HOM05D004228 ORTHO05D005137 3.6e-287 991.5 758 63.3
Prupe.3G104700 Prunus persica HOM05D004228 ORTHO05D005137 1.1e-286 989.9 777 63.4
RcHm_v2.0_Chr2g0132121 Rosa chinensis HOM05D004228 ORTHO05D005137 2.4e-286 988.8 770 64.0
Solyc08g075390.4 Solanum lycopersicum HOM05D004228 ORTHO05D005137 2.4e-286 988.8 766 63.1
Sopen08g024020 Solanum pennellii HOM05D004228 ORTHO05D005137 3.1e-286 988.4 766 62.9
Atru.chr1.2817 Acer truncatum HOM05D004228 ORTHO05D005137 5.2e-286 987.6 753 64.4
CAN.G930.1 Capsicum annuum HOM05D004228 ORTHO05D005137 8.9e-286 986.9 766 62.9
Glyma.13G072500 Glycine max HOM05D004228 ORTHO05D005137 8.9e-286 986.9 758 64.5
Ca_13679_v3 Cicer arietinum L. HOM05D004228 ORTHO05D005137 4.4e-285 984.6 764 64.0
Lj6g0018144 Lotus japonicus HOM05D004228 ORTHO05D005137 4.4e-285 984.6 763 63.3
Migut.E01375 Erythranthe guttata HOM05D004228 ORTHO05D005137 5.8e-285 984.2 766 62.5
THA.LOC104813593 Tarenaya hassleriana HOM05D004228 ORTHO05D005137 7.6e-285 983.8 770 62.5
CiPaw.02G164000 Carya illinoinensis HOM05D004228 ORTHO05D005137 1.7e-284 982.6 770 63.2
TAR626G1406 Trochodendron aralioides HOM05D004228 ORTHO05D005137 2.2e-284 982.2 770 63.1
Lalb_Chr18g0048351 Lupinus albus HOM05D004228 ORTHO05D005137 2.9e-284 981.9 763 63.7
Psat4g022640 Pisum sativum HOM05D004228 ORTHO05D005137 3.8e-284 981.5 763 63.4
arahy.Tifrunner.gnm1.ann1.1BZV33 Arachis hypogaea HOM05D004228 ORTHO05D005137 6.4e-284 980.7 749 64.4
FAN14G1073 Fragaria x ananassa HOM05D004228 ORTHO05D005137 6.4e-284 980.7 778 62.3
ATR0789G048 Amborella trichopoda HOM05D004228 ORTHO05D005137 1.1e-283 979.9 783 62.5
Cc08_g05800 Coffea canephora HOM05D004228 ORTHO05D005137 1.1e-283 979.9 766 63.2
VMungo0540G0565 Vigna mungo HOM05D004228 ORTHO05D005137 1.4e-283 979.5 762 64.0
Ciclev10024933m.g Citrus clementina HOM05D004228 ORTHO05D005137 1.9e-283 979.2 770 63.1
PSO170G5168 Papaver somniferum HOM05D004228 ORTHO05D005137 1.9e-283 979.2 771 62.3
Duzib160G0712 Durio zibethinus HOM05D004228 ORTHO05D005137 5.4e-283 977.6 766 62.7
Phvul.006G018900 Phaseolus vulgaris HOM05D004228 ORTHO05D005137 5.4e-283 977.6 762 63.9
SMO337G0028 Selaginella moellendorffii HOM05D004228 ORTHO05D005137 7.1e-283 977.2 755 63.2
Gorai.011G001100 Gossypium raimondii HOM05D004228 ORTHO05D005137 2.1e-282 975.7 762 63.3
HanXRQChr17g0558091 Helianthus annuus HOM05D004228 ORTHO05D005137 2.7e-282 975.3 757 63.5
Gohir.D10G000700 Gossypium hirsutum HOM05D004228 ORTHO05D005137 3.5e-282 974.9 761 63.1
TWI12G1267 Tripterygium wilfordii HOM05D004228 ORTHO05D005137 3.5e-282 974.9 778 62.3
FAN09G0969 Fragaria x ananassa HOM05D004228 ORTHO05D005137 6.0e-282 974.2 778 62.0
DCAR_030908 Daucus carota HOM05D004228 ORTHO05D005137 7.8e-282 973.8 767 61.9
CSS0026873 Camellia sinensis var. sinensis HOM05D004228 ORTHO05D005137 1.3e-281 973.0 776 61.6
Gohir.A10G000600 Gossypium hirsutum HOM05D004228 ORTHO05D005137 1.3e-281 973.0 760 63.3
Nn8g40122 Nelumbo nucifera HOM05D004228 ORTHO05D005137 2.3e-281 972.2 749 64.6
Aqoxy7G02340 Aquilegia oxysepala HOM05D004228 ORTHO05D005137 3.3e-280 968.4 766 63.2
Ah.09g231750 Amaranthus hybridus HOM05D004228 ORTHO05D005137 5.6e-280 967.6 763 63.2
Sabra03G0135800 Salix brachista HOM05D004228 ORTHO05D005137 1.6e-279 966.1 779 62.6
Carub.0002s2655 Capsella rubella HOM05D004228 ORTHO05D005137 3.6e-279 964.9 763 62.4
Thhalv10018131m.g Eutrema salsugineum HOM05D004228 ORTHO05D005137 4.8e-279 964.5 765 62.5
Os02g0793300 Oryza sativa ssp. japonica HOM05D004228 ORTHO05D005137 6.2e-279 964.1 764 62.3
HPP92_017167 Vanilla planifolia HOM05D004228 ORTHO05D005137 6.2e-279 964.1 783 61.0
BraA07t30343Z Brassica rapa HOM05D004228 ORTHO05D005137 8.1e-279 963.8 770 61.9
Rhsim08G0202500 Rhododendron simsii HOM05D004228 ORTHO05D005137 2.4e-278 962.2 821 58.5
Actinidia25487 Actinidia chinensis HOM05D004228 ORTHO05D005137 3.1e-278 961.8 770 61.6
EL10Ac8g19421 Beta vulgaris HOM05D004228 ORTHO05D005137 9.0e-278 960.3 765 62.1
A07p26990 Brassica napus HOM05D004228 ORTHO05D005137 9.0e-278 960.3 770 61.9
Sp5g34750 Schrenkiella parvula HOM05D004228 ORTHO05D005137 2.0e-277 959.1 768 61.3
AL2G40390 Arabidopsis lyrata HOM05D004228 ORTHO05D005137 5.8e-277 957.6 762 62.1
C06p29710 Brassica napus HOM05D004228 ORTHO05D005137 1.3e-276 956.4 770 61.6
Aa31LG4G1300 Aethionema arabicum HOM05D004228 ORTHO05D005137 2.2e-276 955.7 758 62.5
AT1G79690 Arabidopsis thaliana HOM05D004228 ORTHO05D005137 2.2e-276 955.7 766 61.6
CARHR073460 Cardamine hirsuta HOM05D004228 ORTHO05D005137 2.2e-276 955.7 768 61.1
BolC6t38132H Brassica oleracea HOM05D004228 ORTHO05D005137 3.8e-276 954.9 770 61.3
BcaB02g08706 Brassica carinata HOM05D004228 ORTHO05D005137 8.4e-276 953.7 770 61.6
BcaNung04171 Brassica carinata HOM05D004228 ORTHO05D005137 1.9e-275 952.6 768 61.1
CANSAT64G2586 Cannabis sativa HOM05D004228 ORTHO05D005137 3.2e-275 951.8 777 61.0
BcaC08g47528 Brassica carinata HOM05D004228 ORTHO05D005137 4.2e-275 951.4 763 61.9
Dinv21435 Davidia involucrata HOM05D004228 ORTHO05D005137 4.2e-275 951.4 770 61.8
ECA240G4106 Erigeron canadensis HOM05D004228 ORTHO05D005137 4.2e-275 951.4 757 61.6
Zm00001eb192570 Zea mays HOM05D004228 ORTHO05D005137 7.1e-275 950.7 770 61.4
BcaB02g07234 Brassica carinata HOM05D004228 ORTHO05D005137 4.6e-274 948.0 768 61.3
Lsat_1_v5_gn_6_17241 Lactuca sativa HOM05D004228 ORTHO05D005137 6.0e-274 947.6 758 61.6
Sed0017026 Sechium edule HOM05D004228 ORTHO05D005137 5.1e-273 944.5 776 60.8
Lsat_1_v5_gn_3_53241 Lactuca sativa HOM05D004228 ORTHO05D005137 1.5e-272 943.0 772 61.1
C06p53520 Brassica napus HOM05D004228 ORTHO05D005137 5.6e-272 941.0 771 60.8
CsaV3_7G031770 Cucumis sativus L. HOM05D004228 ORTHO05D005137 1.8e-270 936.0 758 61.7
AagrBONN_evm.TU.Sc2ySwM_117.2286 Anthoceros agrestis HOM05D004228 ORTHO05D005137 2.6e-269 932.2 689 67.8
AUR62002649 Chenopodium quinoa HOM05D004228 ORTHO05D005137 5.8e-269 931.0 768 60.9
BolC6t40368H Brassica oleracea HOM05D004228 ORTHO05D005137 3.8e-268 928.3 771 60.3
BraA07t31978Z Brassica rapa HOM05D004228 ORTHO05D005137 2.4e-267 925.6 738 62.2
MELO3C023479.2 Cucumis melo HOM05D004228 ORTHO05D005137 3.2e-267 925.2 756 61.4
MELO3C023478.2 Cucumis melo HOM05D004228 ORTHO05D005137 2.3e-265 919.1 770 59.7
A07p44700 Brassica napus HOM05D004228 ORTHO05D005137 2.5e-264 915.6 743 61.5
ECA240G2553 Erigeron canadensis HOM05D004228 ORTHO05D005137 1.3e-263 913.3 738 61.2
CsaV3_7G031780 Cucumis sativus L. HOM05D004228 ORTHO05D005137 1.8e-262 909.4 769 59.4
DCAR_002193 Daucus carota HOM05D004228 ORTHO05D005137 3.4e-261 905.2 767 58.9
ClCG09G003440 Citrullus lanatus HOM05D004228 ORTHO05D005137 4.5e-261 904.8 759 59.6
Haze_16698 Corylus avellana HOM05D004228 ORTHO05D005137 4.9e-260 901.4 865 54.6
THA.LOC104808168 Tarenaya hassleriana HOM05D004228 ORTHO05D005137 4.9e-260 901.4 767 58.5
ATR0580G052 Amborella trichopoda HOM05D004228 ORTHO05D005137 8.2e-255 884.0 732 59.8
SGA_v2.0_scaffold121G33058 Striga asiatica HOM05D004228 ORTHO05D005137 4.5e-253 878.2 711 61.9
unitig_37.g12907 Utricularia gibba HOM05D004228 ORTHO05D005137 2.5e-251 872.5 771 57.2
MELO3C023481.2 Cucumis melo HOM05D004228 ORTHO05D005137 1.3e-249 866.7 749 57.9
Medtr3g437740 Medicago truncatula HOM05D004228 ORTHO05D005137 3.7e-247 858.6 689 62.0
Peaxi162Scf00193g00726 Petunia axillaris HOM05D004228 ORTHO05D005137 6.5e-244 847.8 726 58.8
arahy.Tifrunner.gnm1.ann1.GHRN5T Arachis hypogaea HOM05D004228 ORTHO05D005137 7.2e-243 844.3 756 58.2
Actinidia18265 Actinidia chinensis HOM05D004228 ORTHO05D005137 3.6e-242 842.0 676 61.5
VMungo1080G1878 Vigna mungo HOM05D004228 ORTHO05D005137 2.2e-236 822.8 736 56.7
Eucgr.J03134 Eucalyptus grandis HOM05D004228 ORTHO05D005137 5.5e-235 818.1 665 61.1
vmacro19079 Vaccinium macrocarpon HOM05D004228 ORTHO05D005137 1.8e-233 813.1 755 55.9
arahy.Tifrunner.gnm1.ann1.XEX8KQ Arachis hypogaea HOM05D004228 ORTHO05D005137 3.0e-233 812.4 739 57.5
MD17G1227300 Malus domestica HOM05D004228 ORTHO05D005137 4.8e-231 805.1 706 58.9
FAN02G0630 Fragaria x ananassa HOM05D004228 ORTHO05D005137 1.1e-230 803.9 691 58.9
Nitab4.5_0002244g0120 Nicotiana tabacum HOM05D004228 ORTHO05D005137 2.3e-209 733.0 629 58.7
Nitab4.5_0000030g0500 Nicotiana tabacum HOM05D004228 ORTHO05D005137 2.8e-207 726.1 657 56.3
Lsat_1_v5_gn_0_21180 Lactuca sativa HOM05D004228 ORTHO05D005137 8.6e-204 714.5 640 56.1
Lsat_1_v5_gn_0_21260 Lactuca sativa HOM05D004228 ORTHO05D005137 8.3e-199 698.0 651 55.0
Manes.11G069700 Manihot esculenta HOM05D004228 ORTHO05D005137 9.2e-198 694.5 537 64.1
CsaV3_7G031760 Cucumis sativus L. HOM05D004228 ORTHO05D003934 1.2e-186 657.5 559 58.1
AUR62034058 Chenopodium quinoa HOM05D004228 ORTHO05D005137 2.9e-183 646.4 743 49.1
Hma1.2p1_0338F.1_g129690 Hydrangea macrophylla HOM05D004228 ORTHO05D005137 1.9e-166 590.5 508 58.1
Oeu057157.1 Olea europaea HOM05D004228 ORTHO05D005137 1.4e-161 574.3 440 63.0
arahy.Tifrunner.gnm1.ann1.W5V7W0 Arachis hypogaea HOM05D004228 ORTHO05D005137 2.1e-149 533.9 437 60.4
PSO017G5477 Papaver somniferum HOM05D004228 ORTHO05D005137 6.5e-135 485.7 370 65.1
PSO017G2203 Papaver somniferum HOM05D004228 ORTHO05D005137 1.3e-114 418.3 350 57.7
SEGI_32687 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 2.7e-109 400.6 354 58.5
MBI14_g16439_MAGBIO Magnolia biondii HOM05D004228 ORTHO05D005137 8.2e-106 389.0 590 39.7
COL.COLO4_26790 Corchorus olitorius HOM05D004228 ORTHO05D005137 1.2e-104 385.2 265 68.3
Cpa.g.sc167.19 Carica papaya HOM05D004228 ORTHO05D005137 2.5e-78 297.7 249 60.2
Lsat_1_v5_gn_3_49001 Lactuca sativa HOM05D004228 ORTHO05D005137 6.2e-77 293.1 248 56.5
MBI14_g16438_MAGBIO Magnolia biondii HOM05D004228 ORTHO05D005137 4.3e-70 270.4 183 68.3
CBR_g49119 Chara braunii HOM05D004228 ORTHO05D005137 1.7e-66 258.5 220 56.8
MD09G1228800 Malus domestica HOM05D004228 ORTHO05D005137 7.1e-65 253.1 266 51.1
RcHm_v2.0_Chr2g0132171 Rosa chinensis HOM05D004228 ORTHO05D005137 2.0e-59 235.0 254 53.1
MD00G1188200 Malus domestica HOM05D004228 ORTHO05D005137 2.9e-58 231.1 249 50.6
Gorai.007G245800 Gossypium raimondii HOM05D004228 ORTHO05D005137 9.2e-57 226.1 152 69.7
Gorai.008G198300 Gossypium raimondii HOM05D004228 ORTHO05D005137 1.1e-54 219.2 137 74.5
COL.COLO4_26791 Corchorus olitorius HOM05D004228 ORTHO05D005137 2.5e-54 218.0 355 38.9
Gohir.D12G184901 Gossypium hirsutum HOM05D004228 ORTHO05D005137 4.4e-51 207.2 137 71.5
Lsat_1_v5_gn_6_87921 Lactuca sativa HOM05D004228 ORTHO05D005137 5.8e-51 206.8 210 52.9
CBR_g49132 Chara braunii HOM05D004228 ORTHO05D005137 8.4e-50 203.0 148 64.2
CBR_g49120 Chara braunii HOM05D000019 ORTHO05D000002 2.6e-43 181.4 204 49.5
Gorai.006G048700 Gossypium raimondii HOM05D004228 ORTHO05D005137 1.0e-39 169.5 105 73.3
SEGI_04747 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 2.3e-39 168.3 107 70.1
Nitab4.5_0002244g0110 Nicotiana tabacum HOM05D004228 ORTHO05D005137 5.6e-38 163.7 107 72.0
Glyma.20G046501 Glycine max HOM05D004228 ORTHO05D005137 9.6e-38 162.9 150 55.3
Oeu057158.1 Olea europaea HOM05D004228 ORTHO05D005137 1.8e-36 158.7 104 72.1
Nitab4.5_0000030g0490 Nicotiana tabacum HOM05D004228 ORTHO05D005137 2.4e-36 158.3 104 71.2
SEGI_21553 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 9.0e-36 156.4 120 61.7
SEGI_17966 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 1.2e-35 156.0 116 65.5
FAN02G0140 Fragaria x ananassa HOM05D004228 ORTHO05D005137 7.6e-35 153.3 113 62.8
CBR_g49131 Chara braunii HOM05D007088 ORTHO05D008477 3.2e-33 147.9 95 70.5
MD09G1229100 Malus domestica HOM05D004228 ORTHO05D005137 1.6e-32 145.6 83 78.3
Cfa001845 Carpinus fangiana HOM05D004228 ORTHO05D005137 4.6e-32 144.1 116 60.3
Gorai.002G214900 Gossypium raimondii HOM05D004228 ORTHO05D005137 3.4e-27 127.9 79 74.7
Gohir.A06G076350 Gossypium hirsutum HOM05D004228 ORTHO05D005137 4.5e-27 127.5 89 68.5
Gohir.D02G099801 Gossypium hirsutum HOM05D004228 ORTHO05D005137 4.5e-27 127.5 89 68.5
Gohir.A07G034550 Gossypium hirsutum HOM05D004228 ORTHO05D005137 1.0e-26 126.3 89 67.4
Glyma.20G046401 Glycine max HOM05D004228 ORTHO05D005137 1.3e-26 125.9 103 64.1
Gohir.A05G304350 Gossypium hirsutum HOM05D004228 ORTHO05D005137 1.7e-26 125.6 83 71.1
Gohir.D13G121066 Gossypium hirsutum HOM05D004228 ORTHO05D005137 5.5e-25 120.6 79 69.6
MD00G1188000 Malus domestica HOM05D004228 ORTHO05D005137 3.9e-23 114.4 71 69.0
CDE02G2004 Ceratophyllum demersum HOM05D004228 ORTHO05D005137 3.7e-21 107.8 107 51.4
MCO12G087 Micromonas commoda HOM05D004228 ORTHO05D005137 3.1e-20 104.8 162 40.7
SEGI_15998 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 1.1e-17 96.3 83 54.2
Gohir.D09G001001 Gossypium hirsutum HOM05D004228 ORTHO05D005137 9.7e-14 83.2 120 40.0
Lsat_1_v5_gn_5_149700 Lactuca sativa HOM05D004228 ORTHO05D016156 6.3e-13 80.5 86 48.8
Pp3c5_70 Physcomitrium patens HOM05D004228 ORTHO05D005137 6.9e-12 77.0 44 77.3
Gorai.009G406300 Gossypium raimondii HOM05D004228 ORTHO05D005137 9.1e-12 76.6 120 38.3
Cre08.g381800 Chlamydomonas reinhardtii HOM05D004228 ORTHO05D005137 6.5e-10 70.5 93 43.0
Gohir.A11G044150 Gossypium hirsutum HOM05D004228 ORTHO05D005137 1.4e-07 62.8 51 60.8
unitig_26.g8931 Utricularia gibba HOM05D005721 ORTHO05D006758 1.1e-06 59.7 145 31.7
CBR_g49122 Chara braunii HOM05D000019 ORTHO05D000002 7.4e-06 57.0 164 27.4
A05p44340 Brassica napus HOM05D003800 ORTHO05D004549 9.7e-06 56.6 152 30.9
BraA06t23290Z Brassica rapa HOM05D003800 ORTHO05D004549 9.7e-06 56.6 152 30.9


User provided reference genes

Program Settings