Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c5_18660 Physcomitrium patens HOM05D006034 ORTHO05D007535 1.1e-218 763.1 409 100.0
Mapoly0014s0071 Marchantia polymorpha HOM05D006034 ORTHO05D007535 4.4e-114 415.6 338 58.3
SEGI_04673 Sequoiadendron giganteum HOM05D006034 ORTHO05D007535 2.7e-100 369.8 299 63.2
HanXRQChr12g0354751 Helianthus annuus HOM05D006034 ORTHO05D007535 3.5e-95 352.8 292 55.8
Migut.J00593 Erythranthe guttata HOM05D006034 ORTHO05D007535 5.0e-94 349.0 308 53.6
Gorai.010G081700 Gossypium raimondii HOM05D006034 ORTHO05D007535 8.6e-94 348.2 293 60.8
Gohir.A06G071400 Gossypium hirsutum HOM05D006034 ORTHO05D007535 1.1e-93 347.8 293 59.0
COL.COLO4_18220 Corchorus olitorius HOM05D006034 ORTHO05D001756 1.9e-93 347.1 254 62.6
Gohir.D06G070100 Gossypium hirsutum HOM05D006034 ORTHO05D007535 3.3e-93 346.3 293 60.1
PGSC0003DMG400000341 Solanum tuberosum HOM05D006034 ORTHO05D007535 9.5e-93 344.7 256 61.7
Lsat_1_v5_gn_5_145641 Lactuca sativa HOM05D006034 ORTHO05D007535 4.7e-92 342.4 252 61.1
Ciclev10008848m.g Citrus clementina HOM05D006034 ORTHO05D007535 1.8e-91 340.5 257 61.9
TAR636G0081 Trochodendron aralioides HOM05D006034 ORTHO05D007535 2.3e-91 340.1 252 61.9
GSVIVG01015225001 Vitis vinifera HOM05D006034 ORTHO05D007535 8.9e-91 338.2 251 62.2
MELO3C015455.2 Cucumis melo HOM05D006034 ORTHO05D007535 2.0e-90 337.0 253 58.9
ECA234G0840 Erigeron canadensis HOM05D006034 ORTHO05D001756 5.7e-90 335.5 252 59.9
SMO118G0489 Selaginella moellendorffii HOM05D006034 ORTHO05D007535 7.5e-90 335.1 240 63.8
Cc06_g11190 Coffea canephora HOM05D006034 ORTHO05D007535 1.3e-89 334.3 251 60.2
Eucgr.C00910 Eucalyptus grandis HOM05D006034 ORTHO05D007535 1.7e-89 334.0 292 57.5
SGA_v2.0_scaffold62G21594 Striga asiatica HOM05D006034 ORTHO05D007535 3.7e-89 332.8 256 61.3
Lj2g0022455 Lotus japonicus HOM05D006034 ORTHO05D007535 6.3e-89 332.0 292 57.5
VMungo0464G0679 Vigna mungo HOM05D006034 ORTHO05D007535 1.1e-88 331.3 301 56.8
Glyma.07G128800 Glycine max HOM05D006034 ORTHO05D007535 1.4e-88 330.9 293 57.7
Potri.006G150200 Populus trichocarpa HOM05D006034 ORTHO05D007535 1.8e-88 330.5 296 56.1
MD15G1204600 Malus domestica HOM05D006034 ORTHO05D007535 5.4e-88 328.9 287 60.3
HPP92_023401 Vanilla planifolia HOM05D006034 ORTHO05D007535 7.8e-87 325.1 248 57.3
ATR0705G153 Amborella trichopoda HOM05D006034 ORTHO05D007535 1.0e-86 324.7 286 55.9
MD02G1076200 Malus domestica HOM05D006034 ORTHO05D007535 1.0e-86 324.7 292 59.6
FAN26G1667 Fragaria x ananassa HOM05D006034 ORTHO05D007535 1.3e-86 324.3 294 57.5
THA.LOC104807985 Tarenaya hassleriana HOM05D006034 ORTHO05D007535 1.3e-86 324.3 324 57.7
Lalb_Chr24g0393801 Lupinus albus HOM05D006034 ORTHO05D007535 2.9e-86 323.2 289 56.4
RcHm_v2.0_Chr2g0093061 Rosa chinensis HOM05D006034 ORTHO05D007535 3.9e-86 322.8 253 56.1
CAN.G1241.18 Capsicum annuum HOM05D006034 ORTHO05D007535 6.6e-86 322.0 256 58.2
FvH4_1g22100 Fragaria vesca HOM05D006034 ORTHO05D007535 1.1e-85 321.2 253 56.1
FAN19G2130 Fragaria x ananassa HOM05D006034 ORTHO05D007535 1.1e-85 321.2 253 56.1
Sopen12g003720 Solanum pennellii HOM05D006034 ORTHO05D007535 1.1e-85 321.2 252 57.5
AagrBONN_evm.TU.Sc2ySwM_228.1841 Anthoceros agrestis HOM05D006034 ORTHO05D007535 4.3e-85 319.3 375 52.5
Aqoxy7G04066 Aquilegia oxysepala HOM05D006034 ORTHO05D007535 9.5e-85 318.2 251 58.2
Lj7C673T11 Lonicera japonica HOM05D006034 ORTHO05D007535 2.1e-84 317.0 256 58.6
TPR.G35498 Trifolium pratense HOM05D006034 ORTHO05D007535 6.1e-84 315.5 305 54.1
Prupe.7G212400 Prunus persica HOM05D006034 ORTHO05D007535 8.0e-84 315.1 252 56.7
PSO210G3620 Papaver somniferum HOM05D006034 ORTHO05D007535 1.0e-83 314.7 255 56.5
PSO210G1139 Papaver somniferum HOM05D006034 ORTHO05D007535 1.4e-83 314.3 255 56.5
CiPaw.03G217800 Carya illinoinensis HOM05D006034 ORTHO05D007535 2.3e-83 313.5 311 53.1
Medtr4g036675 Medicago truncatula HOM05D006034 ORTHO05D007535 6.8e-83 312.0 295 55.3
QL02p062983 Quercus lobata HOM05D006034 ORTHO05D007535 6.8e-83 312.0 251 57.8
Manes.03G032201 Manihot esculenta HOM05D006034 ORTHO05D007535 2.0e-82 310.5 256 57.0
Os01g0722100 Oryza sativa ssp. japonica HOM05D006034 ORTHO05D007535 2.0e-82 310.5 252 56.3
Psat1g049600 Pisum sativum HOM05D006034 ORTHO05D007535 2.0e-82 310.5 237 61.2
arahy.Tifrunner.gnm1.ann1.VJWZ4U Arachis hypogaea HOM05D006034 ORTHO05D007535 2.6e-82 310.1 344 51.2
AUR62031326 Chenopodium quinoa HOM05D006034 ORTHO05D007535 4.4e-82 309.3 236 58.1
Zm00001eb361670 Zea mays HOM05D006034 ORTHO05D007535 9.8e-82 308.1 253 56.5
arahy.Tifrunner.gnm1.ann1.JYMB6X Arachis hypogaea HOM05D006034 ORTHO05D007535 1.3e-81 307.8 344 51.2
Sed0009633 Sechium edule HOM05D006034 ORTHO05D007535 1.3e-81 307.8 241 59.3
TWI32G0461 Tripterygium wilfordii HOM05D006034 ORTHO05D007535 1.7e-81 307.4 258 64.3
CBR_g36936 Chara braunii HOM05D006034 ORTHO05D007535 2.7e-79 300.1 250 58.0
CsaV3_1G040270 Cucumis sativus L. HOM05D006034 ORTHO05D007535 1.7e-78 297.4 215 61.9
Actinidia25263 Actinidia chinensis HOM05D006034 ORTHO05D007535 3.9e-78 296.2 226 61.1
PGR142G3838 Punica granatum HOM05D006034 ORTHO05D007535 8.6e-78 295.0 296 57.1
Carub.0007s1101 Capsella rubella HOM05D006034 ORTHO05D007535 3.3e-77 293.1 292 52.1
FAN23G1099 Fragaria x ananassa HOM05D006034 ORTHO05D007535 3.3e-77 293.1 237 54.9
THA.LOC104827538 Tarenaya hassleriana HOM05D006034 ORTHO05D007535 7.5e-74 282.0 297 56.2
A08p19610 Brassica napus HOM05D006034 ORTHO05D007535 3.7e-73 279.6 252 54.8
Oeu021834.2 Olea europaea HOM05D006034 ORTHO05D007535 4.9e-73 279.3 253 53.4
Sp7g27400 Schrenkiella parvula HOM05D006034 ORTHO05D007535 4.9e-73 279.3 252 54.4
C03p89230 Brassica napus HOM05D006034 ORTHO05D007535 6.4e-73 278.9 252 54.8
BolC3t21232H Brassica oleracea HOM05D006034 ORTHO05D007535 1.4e-72 277.7 252 54.4
BraA08t33919Z Brassica rapa HOM05D006034 ORTHO05D007535 2.4e-72 276.9 252 54.4
AL7G22860 Arabidopsis lyrata HOM05D006034 ORTHO05D007535 5.4e-72 275.8 252 53.2
BcaB03g12611 Brassica carinata HOM05D006034 ORTHO05D007535 9.2e-72 275.0 252 53.6
Sabra06G0118900 Salix brachista HOM05D006034 ORTHO05D007535 9.2e-72 275.0 296 47.6
BcaC01g01176 Brassica carinata HOM05D006034 ORTHO05D007535 1.2e-71 274.6 252 53.6
CARHR237370 Cardamine hirsuta HOM05D006034 ORTHO05D007535 3.9e-70 269.6 252 52.4
MSTRG.19527 Avicennia marina HOM05D006034 ORTHO05D007535 2.1e-68 263.8 203 60.1
SalBow6G0258 Salvia bowleyana HOM05D006034 ORTHO05D007535 2.1e-68 263.8 289 53.3
FAN28G0362 Fragaria x ananassa HOM05D006034 ORTHO05D007535 1.2e-66 258.1 193 59.6
Hma1.2p1_0800F.1_g219990 Hydrangea macrophylla HOM05D006034 ORTHO05D007535 2.0e-66 257.3 186 64.5
Solyc12g008790.3 Solanum lycopersicum HOM05D006034 ORTHO05D007535 1.6e-63 247.7 186 60.2
Thecc.09G091900 Theobroma cacao HOM05D006034 ORTHO05D007535 2.7e-63 246.9 204 55.9
EL10Ac8g19307 Beta vulgaris HOM05D006034 ORTHO05D007535 1.0e-62 245.0 190 57.9
Glyma.01G003200 Glycine max HOM05D006034 ORTHO05D007535 6.6e-62 242.3 204 54.9
Duzib150G0162 Durio zibethinus HOM05D006034 ORTHO05D007535 1.2e-60 238.0 280 52.1
CsaV3_UNG066530 Cucumis sativus L. HOM05D006034 ORTHO05D007535 9.9e-58 228.4 162 62.3
BcaC09g51741 Brassica carinata HOM05D000577 ORTHO05D007535 1.3e-57 228.0 237 49.8
Aa31LG2G20940 Aethionema arabicum HOM05D006034 ORTHO05D007535 2.9e-57 226.9 334 45.2
Ca_25619_v3 Cicer arietinum L. HOM05D006034 ORTHO05D007535 2.3e-54 217.2 199 58.8
ClCG03G015740 Citrullus lanatus HOM05D000085 ORTHO05D001756 3.0e-54 216.9 315 43.8
Thhalv10025613m.g Eutrema salsugineum HOM05D006034 ORTHO05D007535 5.1e-54 216.1 245 47.3
Nn8g38904 Nelumbo nucifera HOM05D006034 ORTHO05D007535 4.3e-53 213.0 256 43.8
CDE05G1399 Ceratophyllum demersum HOM05D006034 ORTHO05D007535 5.6e-53 212.6 248 43.5
Sed0024135 Sechium edule HOM05D006034 ORTHO05D007535 9.6e-53 211.8 152 61.2
Atru.chr7.1566 Acer truncatum HOM05D006034 ORTHO05D007535 1.3e-52 211.5 187 54.0
Haze_25892 Corylus avellana HOM05D006034 ORTHO05D007535 3.1e-51 206.8 256 44.9
vmacro17221 Vaccinium macrocarpon HOM05D006034 ORTHO05D007535 2.0e-50 204.1 256 42.6
Nitab4.5_0000540g0250 Nicotiana tabacum HOM05D006034 ORTHO05D007535 5.8e-50 202.6 250 42.0
PRCOL_00006271 Prasinoderma coloniale HOM05D006034 ORTHO05D007535 7.6e-50 202.2 289 43.6
Phvul.004G171500 Phaseolus vulgaris HOM05D006034 ORTHO05D007535 3.5e-47 193.4 209 56.5
AUR62027411 Chenopodium quinoa HOM05D006034 ORTHO05D007535 3.0e-46 190.3 193 46.6
Nitab4.5_0011903g0020 Nicotiana tabacum HOM05D006034 ORTHO05D007535 1.1e-45 188.3 256 40.2
Sc18g0001930 Simmondsia chinensis HOM05D006034 ORTHO05D007535 1.1e-45 188.3 188 50.5
Hund24744 Selenicereus undatus HOM05D006034 ORTHO05D007535 4.8e-44 183.0 428 36.7
Hma1.2p1_0800F.1_g219980 Hydrangea macrophylla HOM05D006034 ORTHO05D007535 8.1e-44 182.2 122 69.7
TWI34G0201 Tripterygium wilfordii HOM05D006034 ORTHO05D007535 1.8e-43 181.0 121 66.9
C01p09780 Brassica napus HOM05D006034 ORTHO05D007535 9.3e-40 168.7 204 45.6
Peaxi162Scf00498g00128 Petunia axillaris HOM05D006034 ORTHO05D007535 1.1e-35 155.2 122 58.2
THA.LOC104814611 Tarenaya hassleriana HOM05D006034 ORTHO05D007535 1.1e-35 155.2 212 39.2
MD13G1273400 Malus domestica HOM05D006034 ORTHO05D007535 6.5e-33 146.0 157 43.3
DCAR_011988 Daucus carota HOM05D006034 ORTHO05D007535 1.4e-32 144.8 249 34.9
BcaC09g52218 Brassica carinata HOM05D006034 ORTHO05D007535 2.5e-32 144.1 129 56.6
C01p09940 Brassica napus HOM05D000577 ORTHO05D007535 7.1e-32 142.5 253 37.2
Rhsim05G0022600 Rhododendron simsii HOM05D000085 ORTHO05D001756 2.1e-31 141.0 262 34.4
AT4G29540 Arabidopsis thaliana HOM05D006034 ORTHO05D007535 1.3e-30 138.3 87 75.9
CSS0015474 Camellia sinensis var. sinensis HOM05D006034 ORTHO05D007535 2.3e-30 137.5 87 70.1
MBI01_g02257_MAGBIO Magnolia biondii HOM05D006034 ORTHO05D007535 1.3e-28 131.7 301 31.2
CSS0007101 Camellia sinensis var. sinensis HOM05D006034 ORTHO05D007535 3.1e-27 127.1 99 58.6
Ca_29456_v3 Cicer arietinum L. HOM05D003386 ORTHO05D007535 2.0e-26 124.4 278 31.7
BolC1t00956H Brassica oleracea HOM05D000577 ORTHO05D001093 1.9e-24 117.9 253 33.6
arahy.Tifrunner.gnm1.ann1.ZF8ARW Arachis hypogaea HOM05D006034 ORTHO05D007535 1.2e-23 115.2 91 54.9
C01p09900 Brassica napus HOM05D006034 ORTHO05D007535 3.5e-23 113.6 117 51.3
arahy.Tifrunner.gnm1.ann1.N9NTP8 Arachis hypogaea HOM05D000344 ORTHO05D005296 7.9e-23 112.5 89 57.3
arahy.Tifrunner.gnm1.ann1.9T8A1S Arachis hypogaea HOM05D006034 ORTHO05D007535 3.9e-22 110.2 91 52.7
arahy.Tifrunner.gnm1.ann1.4X02I9 Arachis hypogaea HOM05D006034 ORTHO05D007535 1.6e-20 104.8 91 52.7
Haze_27155 Corylus avellana HOM05D003386 ORTHO05D007535 1.0e-17 95.5 191 34.6
THA.LOC109116077 Tarenaya hassleriana HOM05D006034 ORTHO05D007535 1.1e-16 92.0 93 44.1
unitig_27.g24727 Utricularia gibba HOM05D006034 ORTHO05D007535 2.5e-13 80.9 71 50.7
BolC1t00940H Brassica oleracea HOM05D006034 ORTHO05D007535 9.7e-13 79.0 78 52.6
arahy.Tifrunner.gnm1.ann1.UHY7MZ Arachis hypogaea HOM05D006034 ORTHO05D005279 1.1e-11 75.5 97 44.3
MD17G1181800 Malus domestica HOM05D006034 ORTHO05D007535 2.4e-11 74.3 61 52.5
Hma1.2p1_0800F.1_g220000 Hydrangea macrophylla HOM05D006034 ORTHO05D007535 7.7e-10 69.3 65 49.2
arahy.Tifrunner.gnm1.ann1.C7GQ4M Arachis hypogaea HOM05D006034 ORTHO05D007535 1.7e-09 68.2 55 56.4
CsaV3_UNG066540 Cucumis sativus L. HOM05D006034 ORTHO05D007535 3.8e-09 67.0 65 43.1
arahy.Tifrunner.gnm1.ann1.RIAB4B Arachis hypogaea HOM05D006034 ORTHO05D007535 6.5e-09 66.2 51 56.9
Dinv36751 Davidia involucrata HOM05D006034 ORTHO05D007535 3.6e-07 60.5 50 56.0


User provided reference genes

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