Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c5_17020 Physcomitrium patens HOM05D004767 ORTHO05D005674 1.3e-132 476.5 263 100.0
Mapoly0040s0029 Marchantia polymorpha HOM05D004767 ORTHO05D005674 2.3e-60 236.5 311 44.4
AagrBONN_evm.TU.Sc2ySwM_344.1647 Anthoceros agrestis HOM05D004767 ORTHO05D005674 6.4e-58 228.4 299 44.1
Ah.09g236950 Amaranthus hybridus HOM05D004767 ORTHO05D005674 1.9e-46 190.3 267 40.8
CDE08G0085 Ceratophyllum demersum HOM05D004767 ORTHO05D005674 4.3e-46 189.1 313 39.0
Peaxi162Scf00431g00415 Petunia axillaris HOM05D004767 ORTHO05D005674 7.3e-46 188.3 309 37.2
CiPaw.03G094400 Carya illinoinensis HOM05D004767 ORTHO05D005674 1.2e-45 187.6 324 36.1
SalBow2G0232 Salvia bowleyana HOM05D004767 ORTHO05D005674 1.2e-45 187.6 308 37.3
Hma1.2p1_0085F.1_g044390 Hydrangea macrophylla HOM05D004767 ORTHO05D005674 2.1e-45 186.8 320 37.5
Nn6g31627 Nelumbo nucifera HOM05D004767 ORTHO05D005674 3.6e-45 186.0 298 38.3
PGSC0003DMG400003462 Solanum tuberosum HOM05D004767 ORTHO05D005674 4.7e-45 185.7 301 36.9
MSTRG.16702 Avicennia marina HOM05D004767 ORTHO05D005674 3.1e-44 183.0 318 36.5
TAR625G0043 Trochodendron aralioides HOM05D004767 ORTHO05D005674 4.0e-44 182.6 293 37.5
DCAR_019301 Daucus carota HOM05D004767 ORTHO05D005674 5.2e-44 182.2 300 37.0
SalBow6G2358 Salvia bowleyana HOM05D004767 ORTHO05D005674 6.8e-44 181.8 349 35.0
Sopen02g012180 Solanum pennellii HOM05D004767 ORTHO05D005674 6.8e-44 181.8 309 36.2
Solyc02g038750.3 Solanum lycopersicum HOM05D004767 ORTHO05D005674 8.9e-44 181.4 309 36.2
HPP92_003941 Vanilla planifolia HOM05D004767 ORTHO05D005674 8.9e-44 181.4 295 38.6
Oeu010411.1 Olea europaea HOM05D004767 ORTHO05D005674 1.2e-43 181.0 318 34.9
Manes.02G116500 Manihot esculenta HOM05D004767 ORTHO05D005674 2.0e-43 180.3 325 33.5
PSO017G2362 Papaver somniferum HOM05D004767 ORTHO05D005674 2.0e-43 180.3 321 35.8
CDE02G0197 Ceratophyllum demersum HOM05D004767 ORTHO05D005674 2.6e-43 179.9 295 39.0
Glyma.11G099900 Glycine max HOM05D004767 ORTHO05D005674 2.6e-43 179.9 243 42.0
TAR381G0314 Trochodendron aralioides HOM05D004767 ORTHO05D005674 2.6e-43 179.9 324 36.1
Eucgr.H00074 Eucalyptus grandis HOM05D004767 ORTHO05D005674 3.4e-43 179.5 327 35.8
PGR102G1152 Punica granatum HOM05D004767 ORTHO05D005674 4.4e-43 179.1 299 37.1
Os07g0660700 Oryza sativa ssp. japonica HOM05D004767 ORTHO05D005674 5.8e-43 178.7 318 35.8
SalBow6G5765 Salvia bowleyana HOM05D004767 ORTHO05D005674 5.8e-43 178.7 349 34.7
Glyma.10G129800 Glycine max HOM05D004767 ORTHO05D005674 7.5e-43 178.3 329 35.6
QL10p048860 Quercus lobata HOM05D004767 ORTHO05D005674 7.5e-43 178.3 311 34.7
Sc03g0004110 Simmondsia chinensis HOM05D004767 ORTHO05D005674 7.5e-43 178.3 296 35.8
SMO364G0336 Selaginella moellendorffii HOM05D004767 ORTHO05D005674 9.9e-43 177.9 296 36.8
Lalb_Chr05g0214971 Lupinus albus HOM05D004767 ORTHO05D005674 1.3e-42 177.6 319 35.7
Nitab4.5_0006401g0010 Nicotiana tabacum HOM05D004767 ORTHO05D005674 1.7e-42 177.2 321 35.2
Lj1g0021179 Lotus japonicus HOM05D004767 ORTHO05D005674 2.2e-42 176.8 301 35.9
Lalb_Chr09g0324851 Lupinus albus HOM05D004767 ORTHO05D005674 2.9e-42 176.4 293 37.2
Medtr4g077783 Medicago truncatula HOM05D004767 ORTHO05D005674 2.9e-42 176.4 320 35.3
Medtr4g111810 Medicago truncatula HOM05D004767 ORTHO05D005674 3.7e-42 176.0 295 36.6
Thecc.01G130700 Theobroma cacao HOM05D004767 ORTHO05D005674 4.9e-42 175.6 317 36.6
TPR.G26773 Trifolium pratense HOM05D004767 ORTHO05D005674 4.9e-42 175.6 295 36.6
Ca_02533_v3 Cicer arietinum L. HOM05D004767 ORTHO05D005674 6.4e-42 175.3 294 36.4
Psat1g185000 Pisum sativum HOM05D004767 ORTHO05D005674 6.4e-42 175.3 320 35.3
SGA_v2.0_scaffold108G30887 Striga asiatica HOM05D004767 ORTHO05D005674 6.4e-42 175.3 293 37.2
Duzib264G0649 Durio zibethinus HOM05D004767 ORTHO05D005674 8.3e-42 174.9 329 36.2
Nitab4.5_0000235g0120 Nicotiana tabacum HOM05D004767 ORTHO05D005674 8.3e-42 174.9 341 33.7
Phvul.011G028400 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 8.3e-42 174.9 299 36.5
Gohir.D04G022900 Gossypium hirsutum HOM05D004767 ORTHO05D005674 1.1e-41 174.5 293 37.2
ECA233G4977 Erigeron canadensis HOM05D004767 ORTHO05D005674 1.4e-41 174.1 299 36.1
Gorai.012G034000 Gossypium raimondii HOM05D004767 ORTHO05D005674 1.4e-41 174.1 293 37.2
Sed0012135 Sechium edule HOM05D004767 ORTHO05D005674 1.4e-41 174.1 302 36.8
Aqoxy6G02991 Aquilegia oxysepala HOM05D004767 ORTHO05D005674 1.9e-41 173.7 325 34.8
EL10Ac8g19950 Beta vulgaris HOM05D004767 ORTHO05D005674 1.9e-41 173.7 328 33.5
Hund21306 Selenicereus undatus HOM05D004767 ORTHO05D005674 1.9e-41 173.7 296 36.5
VMungo1127G0990 Vigna mungo HOM05D004767 ORTHO05D005674 1.9e-41 173.7 324 34.9
HanXRQChr15g0489741 Helianthus annuus HOM05D004767 ORTHO05D005674 2.4e-41 173.3 296 36.5
EL10Ac3g07307 Beta vulgaris HOM05D004767 ORTHO05D005674 4.1e-41 172.6 295 34.6
GSVIVG01020926001 Vitis vinifera HOM05D004767 ORTHO05D005674 4.1e-41 172.6 340 33.8
GSVIVG01017458001 Vitis vinifera HOM05D004767 ORTHO05D005674 5.4e-41 172.2 340 34.1
Glyma.12G025800 Glycine max HOM05D004767 ORTHO05D005674 7.1e-41 171.8 331 34.7
Gohir.A05G385700 Gossypium hirsutum HOM05D004767 ORTHO05D005674 7.1e-41 171.8 293 36.9
Sed0020265 Sechium edule HOM05D004767 ORTHO05D005674 1.2e-40 171.0 296 36.5
Prupe.7G070600 Prunus persica HOM05D004767 ORTHO05D005674 2.1e-40 170.2 319 35.1
MD12G1063000 Malus domestica HOM05D004767 ORTHO05D005674 2.7e-40 169.9 323 34.7
AUR62014654 Chenopodium quinoa HOM05D004767 ORTHO05D005674 3.5e-40 169.5 236 41.5
CANSAT54G2063 Cannabis sativa HOM05D004767 ORTHO05D005674 6.0e-40 168.7 296 34.1
Cc07_g12190 Coffea canephora HOM05D004767 ORTHO05D005674 1.0e-39 167.9 290 35.5
TPR.G18695 Trifolium pratense HOM05D004767 ORTHO05D005674 1.7e-39 167.2 297 35.7
FvH4_6g22900 Fragaria vesca HOM05D004767 ORTHO05D005674 3.0e-39 166.4 293 35.8
FAN09G1063 Fragaria x ananassa HOM05D004767 ORTHO05D005674 3.0e-39 166.4 293 35.8
MD14G1063600 Malus domestica HOM05D004767 ORTHO05D005674 3.0e-39 166.4 298 36.2
Potri.004G095000 Populus trichocarpa HOM05D004767 ORTHO05D005674 3.9e-39 166.0 324 32.4
FAN02G2069 Fragaria x ananassa HOM05D004767 ORTHO05D005674 5.1e-39 165.6 293 35.8
RcHm_v2.0_Chr3g0480691 Rosa chinensis HOM05D004767 ORTHO05D005674 5.1e-39 165.6 323 34.1
arahy.Tifrunner.gnm1.ann1.AK1NBZ Arachis hypogaea HOM05D004767 ORTHO05D005674 6.6e-39 165.2 293 36.2
AL4G30210 Arabidopsis lyrata HOM05D004767 ORTHO05D005674 8.6e-39 164.9 286 35.7
CARHR128360 Cardamine hirsuta HOM05D004767 ORTHO05D005674 1.1e-38 164.5 294 35.0
FAN14G1715 Fragaria x ananassa HOM05D004767 ORTHO05D005674 1.1e-38 164.5 293 35.5
Potri.017G120100 Populus trichocarpa HOM05D004767 ORTHO05D005674 1.1e-38 164.5 324 32.4
TWI73G0530 Tripterygium wilfordii HOM05D004767 ORTHO05D005674 1.5e-38 164.1 293 34.8
AT2G34260 Arabidopsis thaliana HOM05D004767 ORTHO05D005674 3.3e-38 162.9 303 34.3
THA.LOC104816808 Tarenaya hassleriana HOM05D004767 ORTHO05D005674 4.3e-38 162.5 313 34.5
AUR62012542 Chenopodium quinoa HOM05D004767 ORTHO05D005674 9.5e-38 161.4 290 34.1
ClCG10G013460 Citrullus lanatus HOM05D004767 ORTHO05D005674 1.2e-37 161.0 312 33.7
COL.COLO4_35713 Corchorus olitorius HOM05D004767 ORTHO05D005674 1.2e-37 161.0 293 37.2
Aa31LG9G14020 Aethionema arabicum HOM05D004767 ORTHO05D005674 1.6e-37 160.6 303 34.0
Lsat_1_v5_gn_8_114040 Lactuca sativa HOM05D004767 ORTHO05D005674 1.6e-37 160.6 290 36.6
BcaB02g09562 Brassica carinata HOM05D004767 ORTHO05D005674 2.1e-37 160.2 303 34.7
AUR62044118 Chenopodium quinoa HOM05D004767 ORTHO05D005674 2.1e-37 160.2 230 40.9
Atru.chr5.1742 Acer truncatum HOM05D004767 ORTHO05D005674 4.7e-37 159.1 293 34.1
arahy.Tifrunner.gnm1.ann1.BE8FK9 Arachis hypogaea HOM05D004767 ORTHO05D005674 8.1e-37 158.3 340 32.6
C04p63650 Brassica napus HOM05D004767 ORTHO05D005674 8.1e-37 158.3 298 34.2
Zm00001eb349300 Zea mays HOM05D004767 ORTHO05D005674 8.1e-37 158.3 323 32.8
Carub.0004s1593 Capsella rubella HOM05D004767 ORTHO05D005674 1.1e-36 157.9 298 34.2
Thhalv10016919m.g Eutrema salsugineum HOM05D004767 ORTHO05D005674 1.4e-36 157.5 276 36.6
Lj4C240T4 Lonicera japonica HOM05D004767 ORTHO05D005674 1.4e-36 157.5 296 34.8
THA.LOC104820618 Tarenaya hassleriana HOM05D004767 ORTHO05D005674 1.4e-36 157.5 309 35.0
unitig_61.g26025 Utricularia gibba HOM05D004767 ORTHO05D005674 1.4e-36 157.5 296 33.4
BcaC02g11487 Brassica carinata HOM05D004767 ORTHO05D005674 2.4e-36 156.8 298 34.2
BraA04t18130Z Brassica rapa HOM05D004767 ORTHO05D005674 3.1e-36 156.4 298 33.9
A05p11370 Brassica napus HOM05D004767 ORTHO05D005674 4.0e-36 156.0 298 34.2
BraA05t20086Z Brassica rapa HOM05D004767 ORTHO05D005674 4.0e-36 156.0 298 34.2
CsaV3_3G043180 Cucumis sativus L. HOM05D004767 ORTHO05D005674 5.2e-36 155.6 320 32.5
Cpa.g.sc365.7 Carica papaya HOM05D004767 ORTHO05D005674 8.9e-36 154.8 293 33.1
C04p14860 Brassica napus HOM05D004767 ORTHO05D005674 1.2e-35 154.5 298 33.9
RcHm_v2.0_Chr4g0410631 Rosa chinensis HOM05D004767 ORTHO05D005674 1.5e-35 154.1 281 34.9
BcaB06g28745 Brassica carinata HOM05D004767 ORTHO05D005674 2.0e-35 153.7 294 33.7
Sp4g16550 Schrenkiella parvula HOM05D004767 ORTHO05D005674 2.0e-35 153.7 298 33.9
Migut.B00408 Erythranthe guttata HOM05D004767 ORTHO05D005674 3.4e-35 152.9 299 34.1
BolC4t23059H Brassica oleracea HOM05D004767 ORTHO05D005674 4.4e-35 152.5 298 33.6
MELO3C026614.2 Cucumis melo HOM05D004767 ORTHO05D005674 4.4e-35 152.5 314 32.5
CSS0049016 Camellia sinensis var. sinensis HOM05D004767 ORTHO05D005674 1.7e-34 150.6 262 35.5
CBR_g37537 Chara braunii HOM05D004767 ORTHO05D005674 3.8e-34 149.4 289 33.6
MCO07G146 Micromonas commoda HOM05D004767 ORTHO05D005674 4.6e-32 142.5 304 31.9
PSO170G0853 Papaver somniferum HOM05D004767 ORTHO05D005674 1.0e-31 141.4 321 31.5
vmacro18476 Vaccinium macrocarpon HOM05D004767 ORTHO05D005674 3.0e-31 139.8 251 34.3
Phvul.005G015600 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 3.9e-31 139.4 302 33.4
Psat1g210160 Pisum sativum HOM05D004767 ORTHO05D005674 3.9e-31 139.4 272 33.8
Medtr1g076780 Medicago truncatula HOM05D004767 ORTHO05D005674 5.1e-31 139.0 122 57.4
Sabra17G0099100 Salix brachista HOM05D004767 ORTHO05D005674 2.5e-30 136.7 220 38.6
Phvul.005G015700 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 3.3e-30 136.3 297 33.3
TAR625G0966 Trochodendron aralioides HOM05D004767 ORTHO05D005674 9.6e-30 134.8 246 35.0
Dinv40217 Davidia involucrata HOM05D004767 ORTHO05D005674 1.2e-29 134.4 120 55.0
COL.COLO4_38041 Corchorus olitorius HOM05D004767 ORTHO05D005674 3.6e-29 132.9 250 36.0
SEGI_28078 Sequoiadendron giganteum HOM05D004767 ORTHO05D005674 8.1e-29 131.7 97 67.0
ATR0680G041 Amborella trichopoda HOM05D004767 ORTHO05D005674 5.2e-28 129.0 121 54.5
Rhsim08G0026000 Rhododendron simsii HOM05D004767 ORTHO05D005674 7.6e-27 125.2 245 35.1
Cfa006688 Carpinus fangiana HOM05D004767 ORTHO05D005674 2.4e-25 120.2 121 52.1
SEGI_20710 Sequoiadendron giganteum HOM05D004767 ORTHO05D005674 2.4e-25 120.2 95 58.9
Lj3A907T66 Lonicera japonica HOM05D004767 ORTHO05D005674 2.1e-24 117.1 160 41.9
Actinidia28754 Actinidia chinensis HOM05D004767 ORTHO05D005674 6.0e-24 115.5 230 31.3
Haze_03669 Corylus avellana HOM05D004767 ORTHO05D005674 1.1e-22 111.3 286 29.4
Glyma.20G080900 Glycine max HOM05D004767 ORTHO05D005674 9.0e-20 101.7 71 69.0
ATR0231G001 Amborella trichopoda HOM05D004767 ORTHO05D005674 3.4e-19 99.8 74 62.2
Cre02.g113250 Chlamydomonas reinhardtii HOM05D004767 ORTHO05D005674 2.2e-18 97.1 77 54.5
Sabra17G0099200 Salix brachista HOM05D004767 ORTHO05D005674 8.4e-18 95.1 77 59.7
QL07p001807 Quercus lobata HOM05D004767 ORTHO05D005674 1.5e-14 84.3 120 41.7
A04p26260 Brassica napus HOM05D004767 ORTHO05D005674 9.6e-14 81.6 70 52.9
Oeu036465.1 Olea europaea HOM05D004767 ORTHO05D005674 2.1e-13 80.5 90 48.9
Psat6g227760 Pisum sativum HOM05D004767 ORTHO05D005674 2.8e-13 80.1 98 42.9
BolC4t27833H Brassica oleracea HOM05D004767 ORTHO05D005674 4.8e-13 79.3 158 33.5
PRCOL_00000722 Prasinoderma coloniale HOM05D004767 ORTHO05D005674 1.4e-12 77.8 206 26.2
Psat6g227720 Pisum sativum HOM05D004767 ORTHO05D005674 2.6e-11 73.6 98 39.8
SHI13610 Sapria himalayana HOM05D004767 ORTHO05D005674 3.4e-11 73.2 91 36.3
Phvul.011G028501 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 2.2e-10 70.5 88 43.2
Lsat_1_v5_gn_6_103760 Lactuca sativa HOM05D004767 ORTHO05D005674 6.4e-10 68.9 56 58.9
vmacro07517 Vaccinium macrocarpon HOM05D004767 ORTHO05D005674 1.6e-08 64.3 49 63.3
Cc11_g01140 Coffea canephora HOM05D004767 ORTHO05D005674 9.6e-06 55.1 48 50.0


User provided reference genes

Program Settings