Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c5_16220 Physcomitrium patens HOM05D007318 ORTHO05D009289 1.0e-187 659.8 313 100.0
AagrBONN_evm.TU.Sc2ySwM_368.1913 Anthoceros agrestis HOM05D007318 ORTHO05D009289 4.6e-63 245.7 229 48.5
Mapoly0020s0170 Marchantia polymorpha HOM05D007318 ORTHO05D009289 4.6e-63 245.7 229 48.9
HanXRQChr07g0194021 Helianthus annuus HOM05D007318 ORTHO05D009289 1.7e-54 217.2 230 45.7
SMO172G0015 Selaginella moellendorffii HOM05D007318 ORTHO05D009289 2.3e-54 216.9 245 44.9
PSO384G0062 Papaver somniferum HOM05D007318 ORTHO05D009289 4.3e-53 212.6 274 42.3
Oeu026589.2 Olea europaea HOM05D007318 ORTHO05D009289 5.6e-53 212.2 272 41.9
RcHm_v2.0_Chr1g0332361 Rosa chinensis HOM05D007318 ORTHO05D009289 7.3e-53 211.8 231 46.8
Atru.chr12.1022 Acer truncatum HOM05D007318 ORTHO05D009289 9.6e-53 211.5 230 47.4
Nn7g37225 Nelumbo nucifera HOM05D007318 ORTHO05D009289 9.6e-53 211.5 241 43.2
Eucgr.J00256 Eucalyptus grandis HOM05D007318 ORTHO05D009289 4.7e-52 209.1 230 46.1
Manes.03G085100 Manihot esculenta HOM05D007318 ORTHO05D009289 4.7e-52 209.1 236 46.6
ECA238G4459 Erigeron canadensis HOM05D007318 ORTHO05D009289 1.1e-51 208.0 235 44.7
Sabra10G0186800 Salix brachista HOM05D007318 ORTHO05D009289 1.8e-51 207.2 229 46.3
Ciclev10016201m.g Citrus clementina HOM05D007318 ORTHO05D009289 4.0e-51 206.1 230 45.7
MBI13_g32993_MAGBIO Magnolia biondii HOM05D007318 ORTHO05D009289 9.0e-51 204.9 233 44.6
Actinidia18618 Actinidia chinensis HOM05D007318 ORTHO05D009289 1.2e-50 204.5 233 43.3
Os11g0136500 Oryza sativa ssp. japonica HOM05D007318 ORTHO05D009289 1.5e-50 204.1 271 41.3
Dinv09616 Davidia involucrata HOM05D007318 ORTHO05D009289 2.0e-50 203.8 229 44.5
Migut.F01608 Erythranthe guttata HOM05D007318 ORTHO05D009289 2.6e-50 203.4 271 39.9
Peaxi162Scf00173g00322 Petunia axillaris HOM05D007318 ORTHO05D009289 2.6e-50 203.4 234 42.7
Lj6g0015884 Lotus japonicus HOM05D007318 ORTHO05D009289 4.4e-50 202.6 229 45.9
SGA_v2.0_scaffold13G06456 Striga asiatica HOM05D007318 ORTHO05D009289 5.8e-50 202.2 271 40.2
Zm00001eb196200 Zea mays HOM05D007318 ORTHO05D009289 5.8e-50 202.2 229 45.0
Nitab4.5_0011538g0040 Nicotiana tabacum HOM05D007318 ORTHO05D009289 2.2e-49 200.3 270 39.3
Duzib151G0977 Durio zibethinus HOM05D007318 ORTHO05D009289 2.9e-49 199.9 234 44.4
Potri.010G238500 Populus trichocarpa HOM05D007318 ORTHO05D009289 3.8e-49 199.5 222 45.5
Sopen11g002850 Solanum pennellii HOM05D007318 ORTHO05D009289 4.9e-49 199.1 276 38.8
CiPaw.14G032900 Carya illinoinensis HOM05D007318 ORTHO05D009289 6.4e-49 198.7 270 40.0
Os12g0133400 Oryza sativa ssp. japonica HOM05D007318 ORTHO05D009289 6.4e-49 198.7 271 40.6
FvH4_7g05530 Fragaria vesca HOM05D007318 ORTHO05D009289 8.4e-49 198.4 238 45.8
TWI63G0749 Tripterygium wilfordii HOM05D007318 ORTHO05D009289 8.4e-49 198.4 271 39.1
Lsat_1_v5_gn_2_104460 Lactuca sativa HOM05D007318 ORTHO05D009289 1.1e-48 198.0 226 44.7
Nitab4.5_0001437g0020 Nicotiana tabacum HOM05D007318 ORTHO05D009289 1.1e-48 198.0 270 39.3
FAN06G3353 Fragaria x ananassa HOM05D007318 ORTHO05D009289 1.9e-48 197.2 238 45.8
FAN01G1304 Fragaria x ananassa HOM05D007318 ORTHO05D009289 2.4e-48 196.8 238 45.8
CSS0001089 Camellia sinensis var. sinensis HOM05D007318 ORTHO05D009289 4.2e-48 196.1 234 42.7
Gorai.005G019900 Gossypium raimondii HOM05D007318 ORTHO05D009289 4.2e-48 196.1 234 43.2
MD02G1257000 Malus domestica HOM05D007318 ORTHO05D009289 4.2e-48 196.1 229 44.1
Sed0005914 Sechium edule HOM05D007318 ORTHO05D009289 4.2e-48 196.1 229 43.7
CSS0042589 Camellia sinensis var. sinensis HOM05D007318 ORTHO05D009289 5.4e-48 195.7 234 42.7
Gohir.D02G016400 Gossypium hirsutum HOM05D007318 ORTHO05D009289 5.4e-48 195.7 234 43.2
GSVIVG01001002001 Vitis vinifera HOM05D007318 ORTHO05D009289 7.1e-48 195.3 235 43.4
CAN.G645.12 Capsicum annuum HOM05D007318 ORTHO05D009289 1.6e-47 194.1 269 38.7
Cc02_g09660 Coffea canephora HOM05D007318 ORTHO05D009289 3.5e-47 193.0 270 39.3
SalBow6G3105 Salvia bowleyana HOM05D007318 ORTHO05D009289 3.5e-47 193.0 271 39.5
QL04p044887 Quercus lobata HOM05D007318 ORTHO05D009289 7.8e-47 191.8 230 43.9
unitig_0.g1560 Utricularia gibba HOM05D007318 ORTHO05D009289 7.8e-47 191.8 268 38.1
CsaV3_5G035390 Cucumis sativus L. HOM05D007318 ORTHO05D009289 1.0e-46 191.4 229 44.5
Aqoxy1G02117 Aquilegia oxysepala HOM05D007318 ORTHO05D009289 1.7e-46 190.7 230 44.3
DCAR_018980 Daucus carota HOM05D007318 ORTHO05D009289 3.9e-46 189.5 235 40.4
Rhsim03G0098000 Rhododendron simsii HOM05D007318 ORTHO05D009289 3.9e-46 189.5 232 41.4
Phvul.007G242433 Phaseolus vulgaris HOM05D007318 ORTHO05D009289 6.6e-46 188.7 228 43.9
Lalb_Chr01g0010421 Lupinus albus HOM05D007318 ORTHO05D009289 1.5e-45 187.6 230 42.6
VMungo0720G2068 Vigna mungo HOM05D007318 ORTHO05D009289 1.5e-45 187.6 228 43.9
PGR044G0176 Punica granatum HOM05D007318 ORTHO05D009289 2.5e-45 186.8 221 43.4
HPP92_018209 Vanilla planifolia HOM05D007318 ORTHO05D009289 2.5e-45 186.8 270 34.8
Haze_02511 Corylus avellana HOM05D007318 ORTHO05D009289 3.3e-45 186.4 234 42.3
Glyma.15G117500 Glycine max HOM05D007318 ORTHO05D009289 4.3e-45 186.0 230 43.0
arahy.Tifrunner.gnm1.ann1.CJJ3HV Arachis hypogaea HOM05D007318 ORTHO05D009289 1.6e-44 184.1 241 42.7
arahy.Tifrunner.gnm1.ann1.CYVU5X Arachis hypogaea HOM05D007318 ORTHO05D009289 1.6e-44 184.1 241 42.7
arahy.Tifrunner.gnm1.ann1.PPG341 Arachis hypogaea HOM05D007318 ORTHO05D009289 1.6e-44 184.1 241 42.7
COL.COLO4_33011 Corchorus olitorius HOM05D007318 ORTHO05D009289 2.1e-44 183.7 229 42.4
MBI13_g44214_MAGBIO Magnolia biondii HOM05D007318 ORTHO05D009289 4.8e-44 182.6 230 42.2
Solyc11g006930.3 Solanum lycopersicum HOM05D007318 ORTHO05D009289 8.1e-44 181.8 223 40.4
CANSAT56G0802 Cannabis sativa HOM05D007318 ORTHO05D009289 1.4e-43 181.0 254 39.8
PRCOL_00002097 Prasinoderma coloniale HOM05D007318 ORTHO05D009289 1.8e-43 180.6 235 36.6
Hund22276 Selenicereus undatus HOM05D007318 ORTHO05D009289 6.9e-43 178.7 236 40.3
Aqoxy1G02095 Aquilegia oxysepala HOM05D007318 ORTHO05D009289 5.8e-42 175.6 242 40.9
MELO3C012351.2 Cucumis melo HOM05D007318 ORTHO05D009289 1.1e-40 171.4 242 40.5
Prupe.2G075500 Prunus persica HOM05D007318 ORTHO05D009289 2.4e-40 170.2 197 46.2
TPR.G10614 Trifolium pratense HOM05D007318 ORTHO05D009289 3.2e-40 169.9 233 39.9
Ca_20265_v3 Cicer arietinum L. HOM05D007318 ORTHO05D009289 7.1e-40 168.7 239 38.5
ATR1096G030 Amborella trichopoda HOM05D007318 ORTHO05D009289 1.6e-39 167.5 194 45.4
TAR636G1683 Trochodendron aralioides HOM05D007318 ORTHO05D009289 2.7e-39 166.8 177 46.3
Cpa.g.sc5.264 Carica papaya HOM05D007318 ORTHO05D009289 4.6e-39 166.0 192 42.7
EL10Ac4g08684 Beta vulgaris HOM05D007318 ORTHO05D009289 5.1e-38 162.5 229 36.2
Lj2A32G32 Lonicera japonica HOM05D007318 ORTHO05D009289 1.5e-37 161.0 231 36.4
Medtr1g050425 Medicago truncatula HOM05D007318 ORTHO05D009289 4.3e-37 159.5 261 36.4
ClCG05G021760 Citrullus lanatus HOM05D007318 ORTHO05D009289 5.6e-37 159.1 192 44.3
Psat2g020440 Pisum sativum HOM05D007318 ORTHO05D009289 3.7e-36 156.4 271 35.1
MCO07G233 Micromonas commoda HOM05D007318 ORTHO05D009289 4.8e-36 156.0 265 35.8
MSTRG.421 Avicennia marina HOM05D007318 ORTHO05D009289 2.7e-31 140.2 162 43.8
ClCG05G018410 Citrullus lanatus HOM05D007318 ORTHO05D009289 2.7e-31 140.2 229 35.8
Glyma.02G164100 Glycine max HOM05D007318 ORTHO05D009289 4.6e-31 139.4 173 43.4
Thecc.03G070600 Theobroma cacao HOM05D007318 ORTHO05D009289 4.0e-27 126.3 164 42.7
Cfa011269 Carpinus fangiana HOM05D007318 ORTHO05D009289 1.3e-25 121.3 148 43.2
SEGI_17929 Sequoiadendron giganteum HOM05D007318 ORTHO05D009289 1.3e-25 121.3 130 46.9
MBI13_g43865_MAGBIO Magnolia biondii HOM05D007318 ORTHO05D009289 9.3e-24 115.2 117 46.2
ClCG00G005260 Citrullus lanatus HOM05D007318 ORTHO05D009289 2.7e-23 113.6 139 40.3
Cre07.g323750 Chlamydomonas reinhardtii HOM05D007318 ORTHO05D009289 3.5e-23 113.2 237 30.8
SEGI_12071 Sequoiadendron giganteum HOM05D007318 ORTHO05D009289 1.1e-21 108.2 82 56.1
Psat6g095000 Pisum sativum HOM05D007318 ORTHO05D009289 4.8e-20 102.8 229 30.1
AUR62043602 Chenopodium quinoa HOM05D007318 ORTHO05D009289 1.5e-18 97.8 143 35.7
Gohir.A02G015000 Gossypium hirsutum HOM05D007318 ORTHO05D009289 4.5e-18 96.3 112 41.1
AUR62042079 Chenopodium quinoa HOM05D007318 ORTHO05D009289 5.9e-18 95.9 143 36.4
Lsat_1_v5_gn_5_177140 Lactuca sativa HOM05D007318 ORTHO05D009289 1.0e-17 95.1 143 37.8
PGSC0003DMG400023973 Solanum tuberosum HOM05D007318 ORTHO05D009289 7.4e-13 79.0 78 47.4
Phvul.007G152100 Phaseolus vulgaris HOM05D005118 ORTHO05D006038 1.3e-12 78.2 223 27.8
Peaxi162Scf00102g00213 Petunia axillaris HOM05D005118 ORTHO05D006038 3.7e-12 76.6 237 27.0
Glyma.13G154600 Glycine max HOM05D005118 ORTHO05D006038 8.2e-12 75.5 237 26.2
AUR62006198 Chenopodium quinoa HOM05D005118 ORTHO05D006038 1.4e-11 74.7 246 26.0
Lalb_Chr10g0096391 Lupinus albus HOM05D005118 ORTHO05D006038 1.8e-11 74.3 164 30.5
SalBow3G3316 Salvia bowleyana HOM05D005118 ORTHO05D006038 3.1e-11 73.6 244 24.6
HPP92_018124 Vanilla planifolia HOM05D005118 ORTHO05D006038 4.1e-11 73.2 216 29.2
MELO3C011647.2 Cucumis melo HOM05D005118 ORTHO05D006038 9.1e-11 72.0 161 29.8
Medtr1g059790 Medicago truncatula HOM05D005118 ORTHO05D006038 2.0e-10 70.9 164 29.3
EL10Ac7g16902 Beta vulgaris HOM05D001354 ORTHO05D007486 2.6e-10 70.5 228 26.8
Dinv09612 Davidia involucrata HOM05D007318 ORTHO05D009289 2.6e-10 70.5 144 32.6
Oeu017686.1 Olea europaea HOM05D005118 ORTHO05D006038 2.6e-10 70.5 227 25.6
arahy.Tifrunner.gnm1.ann1.72V09J Arachis hypogaea HOM05D005118 ORTHO05D006038 3.4e-10 70.1 229 26.2
arahy.Tifrunner.gnm1.ann1.W1QNQS Arachis hypogaea HOM05D005118 ORTHO05D006038 3.4e-10 70.1 229 26.2
CsaV3_6G003860 Cucumis sativus L. HOM05D005118 ORTHO05D006038 5.9e-10 69.3 160 28.8
Lj6g0000791 Lotus japonicus HOM05D005118 ORTHO05D006038 5.9e-10 69.3 236 26.3
Lj6g0018590 Lotus japonicus HOM05D005118 ORTHO05D006038 5.9e-10 69.3 236 26.3
Prupe.7G104300 Prunus persica HOM05D005118 ORTHO05D006038 5.9e-10 69.3 233 24.5
CAN.G397.66 Capsicum annuum HOM05D005118 ORTHO05D006038 7.7e-10 68.9 232 26.7
CiPaw.09G015400 Carya illinoinensis HOM05D005118 ORTHO05D006038 1.0e-09 68.6 170 27.6
Psat6g079520 Pisum sativum HOM05D005118 ORTHO05D006038 1.0e-09 68.6 164 28.7
Solyc09g009960.3 Solanum lycopersicum HOM05D005118 ORTHO05D006038 1.0e-09 68.6 231 24.7
Lsat_1_v5_gn_9_20681 Lactuca sativa HOM05D005118 ORTHO05D006038 1.3e-09 68.2 222 24.3
Sed0011362 Sechium edule HOM05D005118 ORTHO05D006038 1.3e-09 68.2 163 28.2
Sc02g0000340 Simmondsia chinensis HOM05D005118 ORTHO05D006038 2.2e-09 67.4 237 26.2
TPR.G2549 Trifolium pratense HOM05D005118 ORTHO05D006038 2.9e-09 67.0 164 28.7
ClCG08G004490 Citrullus lanatus HOM05D005118 ORTHO05D006038 5.0e-09 66.2 163 28.8
Aa31LG3G4830 Aethionema arabicum HOM05D005118 ORTHO05D006038 6.5e-09 65.9 216 25.0
Ca_00895_v3 Cicer arietinum L. HOM05D005118 ORTHO05D006038 6.5e-09 65.9 244 25.4
Lj5g0005733 Lotus japonicus HOM05D005118 ORTHO05D006038 6.5e-09 65.9 158 29.7
Oeu056875.2 Olea europaea HOM05D005118 ORTHO05D006038 6.5e-09 65.9 238 25.2
Nitab4.5_0001933g0040 Nicotiana tabacum HOM05D005118 ORTHO05D006038 1.4e-08 64.7 239 24.7
Eucgr.A02654 Eucalyptus grandis HOM05D005118 ORTHO05D006038 1.9e-08 64.3 224 25.9
Medtr8g095460 Medicago truncatula HOM05D005118 ORTHO05D006038 1.9e-08 64.3 164 28.0
Zm00001eb000710 Zea mays HOM05D005118 ORTHO05D006038 1.9e-08 64.3 232 25.0
Gohir.A01G205500 Gossypium hirsutum HOM05D005118 ORTHO05D006038 3.2e-08 63.5 164 28.7
CARHR145210 Cardamine hirsuta HOM05D005118 ORTHO05D006038 5.5e-08 62.8 217 25.8
Thhalv10021266m.g Eutrema salsugineum HOM05D005118 ORTHO05D006038 5.5e-08 62.8 178 28.1
Gorai.002G239100 Gossypium raimondii HOM05D005118 ORTHO05D006038 5.5e-08 62.8 164 28.7
AT3G11470 Arabidopsis thaliana HOM05D005118 ORTHO05D006038 7.2e-08 62.4 224 26.8
Gohir.D01G195000 Gossypium hirsutum HOM05D005118 ORTHO05D006038 7.2e-08 62.4 164 28.7
VMungo1309G0892 Vigna mungo HOM05D005118 ORTHO05D006038 7.2e-08 62.4 164 27.4
AL3G23010 Arabidopsis lyrata HOM05D005118 ORTHO05D006038 9.4e-08 62.0 161 29.2
ECA247G3083 Erigeron canadensis HOM05D005118 ORTHO05D006038 9.4e-08 62.0 217 26.3
Atru.chr8.1478 Acer truncatum HOM05D005118 ORTHO05D006038 1.2e-07 61.6 161 29.2
THA.LOC104816589 Tarenaya hassleriana HOM05D005118 ORTHO05D006038 1.2e-07 61.6 162 29.6
Lj6g0005905 Lotus japonicus HOM05D005118 ORTHO05D006038 2.1e-07 60.8 159 27.7
Atru.chr8.1769 Acer truncatum HOM05D005118 ORTHO05D006038 2.7e-07 60.5 231 23.4
MD12G1027200 Malus domestica HOM05D005118 ORTHO05D006038 2.7e-07 60.5 172 27.9
FAN02G2546 Fragaria x ananassa HOM05D005118 ORTHO05D006038 4.7e-07 59.7 230 23.9
RcHm_v2.0_Chr3g0474251 Rosa chinensis HOM05D005118 ORTHO05D006038 4.7e-07 59.7 157 29.3
Carub.0005s0168 Capsella rubella HOM05D005118 ORTHO05D006038 6.1e-07 59.3 162 29.6
COL.COLO4_29702 Corchorus olitorius HOM05D005118 ORTHO05D006038 7.9e-07 58.9 161 28.0
SEGI_18237 Sequoiadendron giganteum HOM05D005118 ORTHO05D006038 7.9e-07 58.9 239 24.7
FAN14G1754 Fragaria x ananassa HOM05D005118 ORTHO05D006038 1.0e-06 58.5 215 24.7
FvH4_6g19140 Fragaria vesca HOM05D005118 ORTHO05D006038 1.4e-06 58.2 215 24.7
FAN09G1525 Fragaria x ananassa HOM05D005118 ORTHO05D006038 1.4e-06 58.2 218 24.3
Sp3g13570 Schrenkiella parvula HOM05D005118 ORTHO05D006038 1.4e-06 58.2 175 27.4
Ciclev10011946m.g Citrus clementina HOM05D005118 ORTHO05D006038 2.3e-06 57.4 161 28.0
PSO063G5626 Papaver somniferum HOM05D005118 ORTHO05D006038 2.3e-06 57.4 229 23.6
Sabra06G0162900 Salix brachista HOM05D005118 ORTHO05D006038 2.3e-06 57.4 230 25.7
AUR62017509 Chenopodium quinoa HOM05D005118 ORTHO05D006038 3.0e-06 57.0 209 23.4
DCAR_013399 Daucus carota HOM05D005118 ORTHO05D006038 3.0e-06 57.0 186 25.8
Os08g0243100 Oryza sativa ssp. japonica HOM05D005118 ORTHO05D006038 3.9e-06 56.6 164 27.4
GSVIVG01016776001 Vitis vinifera HOM05D005118 ORTHO05D006038 3.9e-06 56.6 166 27.7
CSS0000835 Camellia sinensis var. sinensis HOM05D005118 ORTHO05D006038 5.1e-06 56.2 166 27.1
Dinv21195 Davidia involucrata HOM05D005118 ORTHO05D006038 5.1e-06 56.2 211 25.1
Potri.006G211300 Populus trichocarpa HOM05D005118 ORTHO05D006038 6.7e-06 55.8 165 28.5
PSO782G2273 Papaver somniferum HOM05D005118 ORTHO05D006038 8.8e-06 55.5 229 23.1


User provided reference genes

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