Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c5_16090 Physcomitrium patens HOM05D005283 ORTHO05D006769 0.0e+00 1869.7 925 100.0
Pp3c6_10590 Physcomitrium patens HOM05D005283 ORTHO05D006769 0.0e+00 1464.5 931 79.6
Pp3c16_9230 Physcomitrium patens HOM05D005283 ORTHO05D006769 0.0e+00 1133.6 877 67.0
MBI18_g13696_MAGBIO Magnolia biondii HOM05D005283 ORTHO05D006769 7.1e-213 745.0 900 48.7
Nn3g21453 Nelumbo nucifera HOM05D005283 ORTHO05D006769 6.0e-212 741.9 936 48.8
ATR0796G268 Amborella trichopoda HOM05D005283 ORTHO05D006769 2.9e-206 723.0 909 47.5
CANSAT78G0446 Cannabis sativa HOM05D005283 ORTHO05D006769 1.3e-203 714.1 919 47.0
Aqoxy2G02976 Aquilegia oxysepala HOM05D005283 ORTHO05D006769 2.3e-203 713.4 888 47.6
TAR362G0604 Trochodendron aralioides HOM05D005283 ORTHO05D006769 8.7e-203 711.4 955 45.4
CsaV3_3G014700 Cucumis sativus L. HOM05D005283 ORTHO05D006769 1.1e-202 711.1 923 46.6
PSO170G5664 Papaver somniferum HOM05D005283 ORTHO05D006769 2.5e-202 709.9 898 46.9
PSO210G5109 Papaver somniferum HOM05D005283 ORTHO05D006769 3.3e-202 709.5 902 46.8
QL06p009017 Quercus lobata HOM05D005283 ORTHO05D006769 9.6e-202 708.0 893 47.9
FAN12G1245 Fragaria x ananassa HOM05D005283 ORTHO05D006769 1.6e-201 707.2 897 46.5
PGR031G1610 Punica granatum HOM05D005283 ORTHO05D006769 2.1e-201 706.8 899 48.4
CSS0043341 Camellia sinensis var. sinensis HOM05D005283 ORTHO05D006769 2.8e-201 706.4 896 47.7
ClCG05G006140 Citrullus lanatus HOM05D005283 ORTHO05D006769 2.8e-201 706.4 920 47.2
RcHm_v2.0_Chr4g0422381 Rosa chinensis HOM05D005283 ORTHO05D006769 2.8e-201 706.4 897 47.3
Potri.010G014000 Populus trichocarpa HOM05D005283 ORTHO05D006769 3.7e-201 706.1 903 47.1
FAN12G0573 Fragaria x ananassa HOM05D005283 ORTHO05D006769 8.1e-201 704.9 894 46.4
Cfa015392 Carpinus fangiana HOM05D005283 ORTHO05D006769 1.4e-200 704.1 916 46.8
MD08G1066800 Malus domestica HOM05D005283 ORTHO05D006769 1.2e-199 701.0 918 46.3
Ciclev10004285m.g Citrus clementina HOM05D005283 ORTHO05D006769 1.5e-199 700.7 898 47.4
FvH4_4g18240 Fragaria vesca HOM05D005283 ORTHO05D006769 2.0e-199 700.3 894 46.3
MD13G1167900 Malus domestica HOM05D005283 ORTHO05D006769 2.6e-199 699.9 915 46.3
Prupe.1G135400 Prunus persica HOM05D005283 ORTHO05D006769 3.4e-199 699.5 917 46.8
Thecc.04G285400 Theobroma cacao HOM05D005283 ORTHO05D006769 3.4e-199 699.5 898 46.9
Haze_01194 Corylus avellana HOM05D005283 ORTHO05D006769 1.3e-198 697.6 921 46.6
DCAR_027073 Daucus carota HOM05D005283 ORTHO05D006769 1.6e-196 690.6 909 48.4
Ca_21491_v3 Cicer arietinum L. HOM05D005283 ORTHO05D006769 2.1e-196 690.3 955 45.3
Sed0007600 Sechium edule HOM05D005283 ORTHO05D006769 2.7e-196 689.9 925 46.4
TWI09G0775 Tripterygium wilfordii HOM05D005283 ORTHO05D006769 7.9e-196 688.3 907 45.9
Glyma.07G247100 Glycine max HOM05D005283 ORTHO05D006769 1.3e-195 687.6 925 45.6
Phvul.003G105900 Phaseolus vulgaris HOM05D005283 ORTHO05D006769 3.0e-195 686.4 928 46.7
arahy.Tifrunner.gnm1.ann1.PZAP36 Arachis hypogaea HOM05D005283 ORTHO05D006769 5.1e-195 685.6 909 46.3
arahy.Tifrunner.gnm1.ann1.Z6JJZG Arachis hypogaea HOM05D005283 ORTHO05D006769 5.1e-195 685.6 909 46.3
CAN.G185.38 Capsicum annuum HOM05D005283 ORTHO05D006769 6.7e-195 685.3 902 46.7
Nitab4.5_0001120g0020 Nicotiana tabacum HOM05D005283 ORTHO05D006769 1.5e-194 684.1 905 46.6
Duzib151G1199 Durio zibethinus HOM05D005283 ORTHO05D006769 1.9e-194 683.7 907 46.4
vmacro08159 Vaccinium macrocarpon HOM05D005283 ORTHO05D006769 2.5e-194 683.3 948 45.1
TWI53G1858 Tripterygium wilfordii HOM05D005283 ORTHO05D006769 3.3e-194 682.9 904 46.6
Hma1.2p1_1185F.1_g265090 Hydrangea macrophylla HOM05D005283 ORTHO05D006769 7.4e-194 681.8 900 47.0
VMungo1215G0467 Vigna mungo HOM05D005283 ORTHO05D006769 7.4e-194 681.8 941 45.8
MELO3C006668.2 Cucumis melo HOM05D005283 ORTHO05D006769 2.8e-193 679.9 946 44.8
Gohir.D02G054700 Gossypium hirsutum HOM05D005283 ORTHO05D006769 6.3e-193 678.7 898 45.7
Lalb_Chr18g0051671 Lupinus albus HOM05D005283 ORTHO05D006769 6.3e-193 678.7 914 45.5
Medtr4g119960 Medicago truncatula HOM05D005283 ORTHO05D006769 6.3e-193 678.7 926 47.1
Glyma.17G026900 Glycine max HOM05D005283 ORTHO05D006769 1.1e-192 677.9 922 45.6
Gohir.A02G049600 Gossypium hirsutum HOM05D005283 ORTHO05D006769 3.1e-192 676.4 897 45.4
Lsat_1_v5_gn_5_54040 Lactuca sativa HOM05D005283 ORTHO05D006769 3.1e-192 676.4 899 45.6
Solyc01g080620.3 Solanum lycopersicum HOM05D005283 ORTHO05D006769 3.1e-192 676.4 903 46.4
Cc03_g01850 Coffea canephora HOM05D005283 ORTHO05D006769 5.3e-192 675.6 912 45.6
Sopen01g032430 Solanum pennellii HOM05D005283 ORTHO05D006769 5.3e-192 675.6 901 46.2
Psat4g027360 Pisum sativum HOM05D005283 ORTHO05D006769 1.5e-191 674.1 904 46.6
Gorai.005G060600 Gossypium raimondii HOM05D005283 ORTHO05D006769 2.0e-191 673.7 897 45.7
CiPaw.01G148000 Carya illinoinensis HOM05D005283 ORTHO05D006769 5.9e-191 672.2 903 46.4
EL10Ac3g06605 Beta vulgaris HOM05D005283 ORTHO05D006769 1.0e-190 671.4 889 45.9
HanXRQChr13g0411191 Helianthus annuus HOM05D005283 ORTHO05D006769 1.3e-190 671.0 889 45.9
Dinv29746 Davidia involucrata HOM05D005283 ORTHO05D006769 1.7e-190 670.6 924 46.1
Migut.G00154 Erythranthe guttata HOM05D005283 ORTHO05D006769 1.7e-190 670.6 888 45.7
MSTRG.3910 Avicennia marina HOM05D005283 ORTHO05D006769 2.9e-190 669.8 906 45.7
Ah.13g074630 Amaranthus hybridus HOM05D005283 ORTHO05D006769 2.5e-189 666.8 932 45.1
Eucgr.B01324 Eucalyptus grandis HOM05D005283 ORTHO05D006769 5.5e-189 665.6 863 47.7
Sc25g0004780 Simmondsia chinensis HOM05D005283 ORTHO05D006769 2.1e-188 663.7 891 45.8
AUR62041505 Chenopodium quinoa HOM05D005283 ORTHO05D006769 1.8e-187 660.6 894 45.4
Peaxi162Scf01123g00233 Petunia axillaris HOM05D005283 ORTHO05D006769 8.7e-187 658.3 882 45.6
Zm00001eb142310 Zea mays HOM05D005283 ORTHO05D006769 3.7e-185 652.9 934 44.6
THA.LOC104820270 Tarenaya hassleriana HOM05D005283 ORTHO05D006769 4.8e-185 652.5 895 45.8
TPR.G3193 Trifolium pratense HOM05D005283 ORTHO05D006769 8.2e-185 651.7 943 44.5
Os01g0932600 Oryza sativa ssp. japonica HOM05D005283 ORTHO05D006769 2.4e-184 650.2 888 44.5
Lj4g0026758 Lotus japonicus HOM05D005283 ORTHO05D006769 3.1e-184 649.8 902 44.7
Pp3c20_17000 Physcomitrium patens HOM05D005283 ORTHO05D006769 4.1e-184 649.4 372 89.0
Atru.BG.90.p Acer truncatum HOM05D005283 ORTHO05D006769 9.1e-184 648.3 897 45.5
AT4G15840 Arabidopsis thaliana HOM05D005283 ORTHO05D006769 4.2e-181 639.4 916 43.7
Dinv44377 Davidia involucrata HOM05D005283 ORTHO05D006769 1.6e-180 637.5 882 45.8
BraA03t14037Z Brassica rapa HOM05D005283 ORTHO05D006769 3.6e-180 636.3 911 44.1
A03p49360 Brassica napus HOM05D005283 ORTHO05D006769 7.9e-180 635.2 911 43.9
ECA240G0403 Erigeron canadensis HOM05D005283 ORTHO05D006769 7.9e-180 635.2 862 45.7
AL7G39450 Arabidopsis lyrata HOM05D005283 ORTHO05D006769 2.3e-179 633.6 905 44.0
Carub.0007s2581 Capsella rubella HOM05D005283 ORTHO05D006769 3.0e-179 633.3 889 44.5
CARHR290370 Cardamine hirsuta HOM05D005283 ORTHO05D006769 1.5e-178 630.9 909 43.7
Thhalv10024402m.g Eutrema salsugineum HOM05D005283 ORTHO05D006769 2.6e-178 630.2 891 44.8
Sabra10G0008900 Salix brachista HOM05D005283 ORTHO05D006769 4.4e-178 629.4 847 46.4
Nitab4.5_0000059g0420 Nicotiana tabacum HOM05D005283 ORTHO05D006769 7.4e-178 628.6 958 43.1
C07p47430 Brassica napus HOM05D005283 ORTHO05D006769 1.7e-177 627.5 910 43.6
BolC7t45270H Brassica oleracea HOM05D005283 ORTHO05D006769 1.7e-177 627.5 910 43.6
BcaC06g32968 Brassica carinata HOM05D005283 ORTHO05D006769 3.7e-177 626.3 916 43.4
Rhsim04G0223000 Rhododendron simsii HOM05D005283 ORTHO05D006769 1.1e-176 624.8 1060 39.9
Sp7g14240 Schrenkiella parvula HOM05D005283 ORTHO05D006769 2.0e-175 620.5 905 44.1
CDE05G1280 Ceratophyllum demersum HOM05D005283 ORTHO05D006769 3.4e-175 619.8 901 43.8
BcaC06g33444 Brassica carinata HOM05D005283 ORTHO05D006769 3.2e-173 613.2 910 42.7
SGA_v2.0_scaffold18G08298 Striga asiatica HOM05D005283 ORTHO05D006769 3.0e-171 606.7 887 43.6
FAN17G2169 Fragaria x ananassa HOM05D005283 ORTHO05D006769 5.2e-171 605.9 987 40.7
CDE11G0961 Ceratophyllum demersum HOM05D005283 ORTHO05D006769 3.3e-170 603.2 890 42.5
Manes.03G195900 Manihot esculenta HOM05D005283 ORTHO05D006769 5.3e-168 595.9 878 44.6
Zm00001eb363540 Zea mays HOM05D005283 ORTHO05D006769 5.2e-163 579.3 829 43.8
Oeu029706.1 Olea europaea HOM05D005283 ORTHO05D000116 2.0e-159 567.4 871 42.9
Hund20553 Selenicereus undatus HOM05D005283 ORTHO05D006769 1.4e-144 518.1 822 41.7
Hma1.2p1_2906F.1_g330120 Hydrangea macrophylla HOM05D005283 ORTHO05D006769 3.5e-135 486.9 832 39.7
HPP92_002145 Vanilla planifolia HOM05D005283 ORTHO05D006769 2.8e-124 450.7 781 39.4
GSVIVG01017732001 Vitis vinifera HOM05D005283 ORTHO05D006769 2.2e-113 414.5 559 44.7
COL.COLO4_13862 Corchorus olitorius HOM05D005283 ORTHO05D006769 3.1e-107 394.0 908 34.3
Actinidia40275 Actinidia chinensis HOM05D005283 ORTHO05D006769 2.3e-94 351.3 406 50.5
Lj6A677G73 Lonicera japonica HOM05D005283 ORTHO05D006769 1.6e-87 328.6 418 48.1
Atru.chr4.2851 Acer truncatum HOM05D005283 ORTHO05D006769 8.7e-86 322.8 386 50.8
TAR633G1039 Trochodendron aralioides HOM05D005283 ORTHO05D006769 9.6e-85 319.3 242 64.0
Actinidia40274 Actinidia chinensis HOM05D005283 ORTHO05D006769 1.1e-83 315.8 241 63.1
Lj6C677T9 Lonicera japonica HOM05D005283 ORTHO05D006769 6.0e-79 300.1 352 48.3
PRCOL_00005501 Prasinoderma coloniale HOM05D005283 ORTHO05D006769 2.2e-76 291.6 905 28.7
unitig_748.g8731 Utricularia gibba HOM05D005283 ORTHO05D006769 2.2e-76 291.6 205 64.9
Cpa.g.sc66.36 Carica papaya HOM05D005283 ORTHO05D006769 5.7e-69 266.9 451 38.8
TAR633G1238 Trochodendron aralioides HOM05D005283 ORTHO05D006769 2.9e-65 254.6 151 79.5
SEGI_38162 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 3.8e-65 254.2 605 34.2
SEGI_40593 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 3.8e-65 254.2 605 34.2
GSVIVG01017731001 Vitis vinifera HOM05D005283 ORTHO05D006769 7.2e-64 250.0 164 73.2
SEGI_08317 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 1.0e-57 229.6 137 80.3
FAN07G0879 Fragaria x ananassa HOM05D005283 ORTHO05D006769 2.6e-53 214.9 145 72.4
HPP92_002144 Vanilla planifolia HOM05D005283 ORTHO05D006769 4.4e-53 214.2 137 75.9
SEGI_24032 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 7.0e-51 206.8 117 78.6
SEGI_35628 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 5.5e-48 197.2 199 47.2
Actinidia26773 Actinidia chinensis HOM05D005283 ORTHO05D006769 1.8e-46 192.2 182 57.1
Mapoly0037s0064 Marchantia polymorpha HOM05D005283 ORTHO05D006769 3.7e-44 184.5 218 42.7
AUR62042850 Chenopodium quinoa HOM05D005283 ORTHO05D006769 5.5e-40 170.6 495 31.7
TAR633G2729 Trochodendron aralioides HOM05D005283 ORTHO05D006769 1.5e-37 162.5 277 40.1
MCO04G464 Micromonas commoda HOM05D005283 ORTHO05D006769 2.6e-29 135.2 280 31.4
unitig_748.g8730 Utricularia gibba HOM05D005283 ORTHO05D006769 2.2e-28 132.1 293 36.2
BolC4t27184H Brassica oleracea HOM05D005283 ORTHO05D006769 7.8e-18 97.1 128 43.8
A04p20740 Brassica napus HOM05D005283 ORTHO05D006769 5.6e-16 90.9 154 36.4
Cfa001632 Carpinus fangiana HOM05D005283 ORTHO05D006769 8.0e-15 87.0 197 28.9
Cpa.g.sc66.37 Carica papaya HOM05D005283 ORTHO05D006769 1.4e-11 76.3 66 54.5
BcaC05g28381 Brassica carinata HOM05D005283 ORTHO05D021637 7.0e-11 73.9 48 64.6
AUR62006322 Chenopodium quinoa HOM05D007078 ORTHO05D008745 7.0e-11 73.9 51 70.6
C04p56580 Brassica napus HOM05D005283 ORTHO05D006769 6.6e-09 67.4 128 35.2
Cpa.g.c37401 Carica papaya HOM05D005283 ORTHO05D006769 7.3e-08 63.9 32 78.1
BcaC02g08264 Brassica carinata HOM05D005283 ORTHO05D006769 9.5e-08 63.5 118 35.6


User provided reference genes

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