Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c5_16080 Physcomitrium patens HOM05D005747 ORTHO05D007159 3.9e-54 214.5 108 100.0
Pp3c6_8930 Physcomitrium patens HOM05D005747 ORTHO05D007159 4.5e-34 147.9 106 69.8
Mapoly0011s0153 Marchantia polymorpha HOM05D005747 ORTHO05D007159 1.2e-31 139.8 108 66.7
SMO137G0056 Selaginella moellendorffii HOM05D005747 ORTHO05D007159 2.0e-26 122.5 99 59.6
Lj5g0010104 Lotus japonicus HOM05D005747 ORTHO05D007159 4.5e-26 121.3 97 57.7
vmacro07288 Vaccinium macrocarpon HOM05D005747 ORTHO05D007159 4.5e-26 121.3 99 61.6
THA.LOC104826911 Tarenaya hassleriana HOM05D005747 ORTHO05D007159 1.0e-25 120.2 94 60.6
arahy.Tifrunner.gnm1.ann1.548B55 Arachis hypogaea HOM05D005747 ORTHO05D007159 2.2e-25 119.0 96 59.4
Haze_20124 Corylus avellana HOM05D005747 ORTHO05D007159 2.2e-25 119.0 96 60.4
arahy.Tifrunner.gnm1.ann1.GC88CS Arachis hypogaea HOM05D005747 ORTHO05D007159 2.9e-25 118.6 96 58.3
SalBow5G0179 Salvia bowleyana HOM05D005747 ORTHO05D007159 2.9e-25 118.6 96 60.4
SalBow5G1412 Salvia bowleyana HOM05D005747 ORTHO05D007159 2.9e-25 118.6 96 60.4
Atru.chr8.1820 Acer truncatum HOM05D005747 ORTHO05D007159 3.8e-25 118.2 96 58.3
arahy.Tifrunner.gnm1.ann1.W5J3RK Arachis hypogaea HOM05D005747 ORTHO05D007159 3.8e-25 118.2 96 59.4
Aqoxy1G01163 Aquilegia oxysepala HOM05D005747 ORTHO05D007159 5.0e-25 117.9 98 58.2
arahy.Tifrunner.gnm1.ann1.47U1LD Arachis hypogaea HOM05D005747 ORTHO05D007159 5.0e-25 117.9 96 58.3
TAR369G0407 Trochodendron aralioides HOM05D005747 ORTHO05D007159 5.0e-25 117.9 97 57.7
Medtr1g063370 Medicago truncatula HOM05D005747 ORTHO05D007159 6.5e-25 117.5 98 57.1
Psat6g073040 Pisum sativum HOM05D005747 ORTHO05D007159 6.5e-25 117.5 98 59.2
Actinidia08777 Actinidia chinensis HOM05D005747 ORTHO05D007159 8.5e-25 117.1 96 58.3
Cfa020071 Carpinus fangiana HOM05D005747 ORTHO05D007159 8.5e-25 117.1 96 59.4
TWI74G1168 Tripterygium wilfordii HOM05D005747 ORTHO05D007159 8.5e-25 117.1 92 60.9
C02p00970 Brassica napus HOM05D001005 ORTHO05D000836 1.1e-24 116.7 96 58.3
Ca_11494_v3 Cicer arietinum L. HOM05D005747 ORTHO05D007159 1.1e-24 116.7 96 58.3
Hma1.2p1_0205F.1_g087080 Hydrangea macrophylla HOM05D005747 ORTHO05D007159 1.4e-24 116.3 92 59.8
PGR004G0006 Punica granatum HOM05D005747 ORTHO05D007159 1.4e-24 116.3 96 57.3
Actinidia28901 Actinidia chinensis HOM05D005747 ORTHO05D007159 1.9e-24 115.9 96 57.3
MSTRG.19175 Avicennia marina HOM05D005747 ORTHO05D007159 1.9e-24 115.9 92 62.0
CAN.G900.40 Capsicum annuum HOM05D005747 ORTHO05D007159 1.9e-24 115.9 95 60.0
Solyc09g008140.3 Solanum lycopersicum HOM05D005747 ORTHO05D007159 1.9e-24 115.9 95 58.9
Sopen09g002940 Solanum pennellii HOM05D005747 ORTHO05D007159 1.9e-24 115.9 95 58.9
Medtr7g101880 Medicago truncatula HOM05D005747 ORTHO05D007159 2.5e-24 115.5 93 59.1
Rhsim03G0092400 Rhododendron simsii HOM05D005747 ORTHO05D007159 2.5e-24 115.5 96 60.4
TPR.G25697 Trifolium pratense HOM05D005747 ORTHO05D007159 2.5e-24 115.5 96 56.2
AL6G12680 Arabidopsis lyrata HOM05D005747 ORTHO05D007159 3.2e-24 115.2 101 55.4
BcaC03g13014 Brassica carinata HOM05D005747 ORTHO05D007159 3.2e-24 115.2 96 57.3
Haze_20552 Corylus avellana HOM05D005747 ORTHO05D007159 3.2e-24 115.2 96 59.4
Migut.L01698 Erythranthe guttata HOM05D005747 ORTHO05D007159 3.2e-24 115.2 95 57.9
FAN02G1695 Fragaria x ananassa HOM05D005747 ORTHO05D007159 4.2e-24 114.8 96 57.3
SGA_v2.0_scaffold75G24844 Striga asiatica HOM05D005747 ORTHO05D007159 4.2e-24 114.8 92 62.0
TWI77G0618 Tripterygium wilfordii HOM05D005747 ORTHO05D007159 4.2e-24 114.8 92 58.7
FAN05G2010 Fragaria x ananassa HOM05D005747 ORTHO05D007159 5.5e-24 114.4 96 58.3
RcHm_v2.0_Chr3g0470141 Rosa chinensis HOM05D005747 ORTHO05D007159 5.5e-24 114.4 96 56.2
Sp6g39390 Schrenkiella parvula HOM05D005747 ORTHO05D007159 7.2e-24 114.0 96 55.2
Sed0019850 Sechium edule HOM05D005747 ORTHO05D007159 7.2e-24 114.0 94 56.4
Thhalv10015093m.g Eutrema salsugineum HOM05D005747 ORTHO05D007159 9.4e-24 113.6 96 57.3
Psat0s2933g0080 Pisum sativum HOM05D005747 ORTHO05D007159 9.4e-24 113.6 93 58.1
VMungo1383G0680 Vigna mungo HOM05D005747 ORTHO05D007159 9.4e-24 113.6 94 58.5
FvH4_6g16280 Fragaria vesca HOM05D005747 ORTHO05D007159 1.6e-23 112.8 96 56.2
FAN14G5754 Fragaria x ananassa HOM05D005747 ORTHO05D007159 1.6e-23 112.8 96 56.2
SEGI_15519 Sequoiadendron giganteum HOM05D005747 ORTHO05D007159 1.6e-23 112.8 92 57.6
AT5G03345 Arabidopsis thaliana HOM05D005747 ORTHO05D007159 2.1e-23 112.5 96 54.2
CSS0033637 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 2.1e-23 112.5 92 59.8
MELO3C009353.2 Cucumis melo HOM05D005747 ORTHO05D007159 2.1e-23 112.5 97 55.7
ECA233G4120 Erigeron canadensis HOM05D005747 ORTHO05D007159 2.1e-23 112.5 99 52.5
Phvul.001G178800 Phaseolus vulgaris HOM05D005747 ORTHO05D007159 2.1e-23 112.5 94 57.4
CSS0022084 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 2.7e-23 112.1 92 59.8
Potri.006G125300 Populus trichocarpa HOM05D005747 ORTHO05D007159 2.7e-23 112.1 98 56.1
Thecc.05G065200 Theobroma cacao HOM05D005747 ORTHO05D007159 2.7e-23 112.1 96 56.2
AagrBONN_evm.TU.Sc2ySwM_362.1648 Anthoceros agrestis HOM05D005747 ORTHO05D007159 3.6e-23 111.7 92 58.7
Cc06_g04180 Coffea canephora HOM05D005747 ORTHO05D007159 3.6e-23 111.7 92 59.8
Duzib093G2107 Durio zibethinus HOM05D005747 ORTHO05D007159 3.6e-23 111.7 96 55.2
Lsat_1_v5_gn_6_25181 Lactuca sativa HOM05D005747 ORTHO05D007159 3.6e-23 111.7 99 52.5
Peaxi162Scf00701g00029 Petunia axillaris HOM05D005747 ORTHO05D007159 3.6e-23 111.7 95 58.9
Prupe.6G232700 Prunus persica HOM05D005747 ORTHO05D007159 3.6e-23 111.7 96 53.1
CANSAT80G0760 Cannabis sativa HOM05D005747 ORTHO05D007159 4.7e-23 111.3 100 56.0
CsaV3_3G035950 Cucumis sativus L. HOM05D005747 ORTHO05D007159 4.7e-23 111.3 94 57.4
FAN09G1333 Fragaria x ananassa HOM05D005747 ORTHO05D007159 4.7e-23 111.3 96 56.2
Glyma.13G143500 Glycine max HOM05D005747 ORTHO05D007159 4.7e-23 111.3 96 55.2
CARHR210000 Cardamine hirsuta HOM05D005747 ORTHO05D007159 6.1e-23 110.9 96 56.2
Eucgr.A01688 Eucalyptus grandis HOM05D005747 ORTHO05D007159 6.1e-23 110.9 96 54.2
QL07p043606 Quercus lobata HOM05D005747 ORTHO05D007159 6.1e-23 110.9 96 55.2
Aa31LG3G2310 Aethionema arabicum HOM05D005747 ORTHO05D007159 7.9e-23 110.5 94 55.3
ClCG10G020160 Citrullus lanatus HOM05D005747 ORTHO05D007159 7.9e-23 110.5 94 56.4
Glyma.19G183500 Glycine max HOM05D005747 ORTHO05D007159 7.9e-23 110.5 94 56.4
TPR.G9369 Trifolium pratense HOM05D005747 ORTHO05D007159 7.9e-23 110.5 93 57.0
GSVIVG01025728001 Vitis vinifera HOM05D005747 ORTHO05D007159 7.9e-23 110.5 96 54.2
Dinv37311 Davidia involucrata HOM05D005747 ORTHO05D007159 1.0e-22 110.2 94 57.4
CSS0033757 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 1.4e-22 109.8 96 56.2
PSO063G6473 Papaver somniferum HOM05D005747 ORTHO05D007159 1.4e-22 109.8 95 53.7
PSO339G2391 Papaver somniferum HOM05D005747 ORTHO05D007159 1.4e-22 109.8 95 53.7
Ciclev10013173m.g Citrus clementina HOM05D005747 ORTHO05D007159 1.8e-22 109.4 96 52.1
Duzib128G1360 Durio zibethinus HOM05D005747 ORTHO05D007159 1.8e-22 109.4 96 54.2
Carub.0006s0216 Capsella rubella HOM05D005747 ORTHO05D007159 2.3e-22 109.0 96 52.1
HanXRQChr13g0401071 Helianthus annuus HOM05D005747 ORTHO05D007159 3.9e-22 108.2 99 50.5
Manes.08G009800 Manihot esculenta HOM05D005747 ORTHO05D007159 3.9e-22 108.2 92 55.4
Potri.016G091900 Populus trichocarpa HOM05D005747 ORTHO05D007159 3.9e-22 108.2 98 54.1
TAR633G0139 Trochodendron aralioides HOM05D005747 ORTHO05D007159 5.1e-22 107.8 95 56.8
Glyma.10G057000 Glycine max HOM05D005747 ORTHO05D007159 6.7e-22 107.5 96 52.1
Nn7g38309 Nelumbo nucifera HOM05D005747 ORTHO05D007159 6.7e-22 107.5 92 58.7
Sc02g0001670 Simmondsia chinensis HOM05D005747 ORTHO05D007159 8.8e-22 107.1 95 53.7
Gohir.A09G147500 Gossypium hirsutum HOM05D005747 ORTHO05D007159 4.4e-21 104.8 95 53.7
Lalb_Chr02g0155891 Lupinus albus HOM05D005747 ORTHO05D007159 7.4e-21 104.0 94 51.1
CDE06G0870 Ceratophyllum demersum HOM05D005747 ORTHO05D007159 9.7e-21 103.6 90 57.8
Gohir.D09G143100 Gossypium hirsutum HOM05D005747 ORTHO05D007159 9.7e-21 103.6 90 55.6
Gorai.006G164600 Gossypium raimondii HOM05D005747 ORTHO05D007159 9.7e-21 103.6 90 55.6
Lalb_Chr20g0112621 Lupinus albus HOM05D005747 ORTHO05D007159 9.7e-21 103.6 100 50.0
MD04G1094200 Malus domestica HOM05D005747 ORTHO05D007159 9.7e-21 103.6 96 50.0
EL10Ac1g00026 Beta vulgaris HOM05D005747 ORTHO05D007159 1.3e-20 103.2 91 53.8
MD12G1113800 Malus domestica HOM05D005747 ORTHO05D007159 1.7e-20 102.8 96 49.0
unitig_578.g16384 Utricularia gibba HOM05D005747 ORTHO05D007159 1.7e-20 102.8 93 53.8
Zm00001eb136890 Zea mays HOM05D005747 ORTHO05D007159 1.7e-20 102.8 92 48.9
Os12g0566400 Oryza sativa ssp. japonica HOM05D005747 ORTHO05D007159 2.2e-20 102.4 88 52.3
Zm00001eb028740 Zea mays HOM05D005747 ORTHO05D007159 2.2e-20 102.4 92 48.9
HanXRQChr02g0051611 Helianthus annuus HOM05D005747 ORTHO05D007159 3.7e-20 101.7 97 49.5
Nitab4.5_0000578g0140 Nicotiana tabacum HOM05D005747 ORTHO05D007159 4.8e-20 101.3 95 54.7
Nitab4.5_0002632g0020 Nicotiana tabacum HOM05D005747 ORTHO05D007159 4.8e-20 101.3 95 54.7
HPP92_009808 Vanilla planifolia HOM05D005747 ORTHO05D007159 1.8e-19 99.4 90 55.6
Manes.09G066900 Manihot esculenta HOM05D005747 ORTHO05D007159 2.4e-19 99.0 94 50.0
Phvul.007G149300 Phaseolus vulgaris HOM05D005747 ORTHO05D007159 2.4e-19 99.0 88 52.3
PGSC0003DMG400003860 Solanum tuberosum HOM05D005747 ORTHO05D007159 1.2e-18 96.7 123 44.7
Ah.05g172440 Amaranthus hybridus HOM05D005747 ORTHO05D007159 2.6e-18 95.5 89 51.7
Hma1.2p1_0205F.1_g087090 Hydrangea macrophylla HOM05D005747 ORTHO05D007159 3.8e-17 91.7 77 55.8
Oeu053677.1 Olea europaea HOM05D005747 ORTHO05D007159 5.5e-16 87.8 72 58.3
DCAR_020822 Daucus carota HOM05D005747 ORTHO05D007159 2.7e-15 85.5 75 54.7
Glyma.03G182900 Glycine max HOM05D005747 ORTHO05D007159 3.6e-15 85.1 123 39.8
Lj2A1109T71 Lonicera japonica HOM05D005747 ORTHO05D007159 8.0e-15 84.0 87 44.8
Gorai.006G061900 Gossypium raimondii HOM05D005747 ORTHO05D007159 8.8e-14 80.5 92 47.8
Hund20347 Selenicereus undatus HOM05D005747 ORTHO05D007159 3.3e-13 78.6 73 52.1
ATR0104G002 Amborella trichopoda HOM05D005747 ORTHO05D007159 2.2e-12 75.9 72 48.6
CSS0041044 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 3.7e-12 75.1 66 56.1
CSS0043170 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 3.7e-12 75.1 66 56.1
Oeu045224.1 Olea europaea HOM05D005747 ORTHO05D007159 6.3e-12 74.3 82 47.6
Sabra16G0097500 Salix brachista HOM05D005747 ORTHO05D007159 1.1e-11 73.6 74 51.4
Sed0003931 Sechium edule HOM05D005747 ORTHO05D007159 1.6e-10 69.7 68 51.5
CiPaw.09G219400 Carya illinoinensis HOM05D005747 ORTHO05D007159 1.0e-09 67.0 92 40.2
AUR62004704 Chenopodium quinoa HOM05D005747 ORTHO05D007159 2.1e-07 59.3 94 37.2
AUR62023620 Chenopodium quinoa HOM05D005747 ORTHO05D007159 2.1e-07 59.3 97 37.1
MCO03G507 Micromonas commoda HOM05D005747 ORTHO05D007159 2.1e-07 59.3 91 38.5
Dinv35784 Davidia involucrata HOM05D005747 ORTHO05D007159 6.7e-06 54.3 54 51.9


User provided reference genes

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