Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c5_15650 Physcomitrium patens HOM05D004945 ORTHO05D005536 2.4e-81 305.4 153 100.0
Pp3c25_5460 Physcomitrium patens HOM05D004945 ORTHO05D005536 6.6e-39 164.5 92 84.8
Pp3c25_5480 Physcomitrium patens HOM05D004945 ORTHO05D005536 3.3e-38 162.2 91 84.6
Mapoly0011s0061 Marchantia polymorpha HOM05D004945 ORTHO05D005536 1.2e-27 127.1 91 63.7
Pp3c5_15280 Physcomitrium patens HOM05D004945 ORTHO05D005536 1.6e-21 106.7 79 58.2
CBR_g50842 Chara braunii HOM05D004945 ORTHO05D005536 2.2e-18 96.3 94 47.9
AagrBONN_evm.TU.Sc2ySwM_228.1937 Anthoceros agrestis HOM05D004945 ORTHO05D005536 5.4e-17 91.7 77 51.9
AagrBONN_evm.TU.Sc2ySwM_344.4974 Anthoceros agrestis HOM05D004945 ORTHO05D005536 5.4e-17 91.7 80 55.0
BcaNung00508 Brassica carinata HOM05D004945 ORTHO05D005536 3.8e-10 68.9 77 41.6
Manes.06G020000 Manihot esculenta HOM05D004945 ORTHO05D005536 6.4e-10 68.2 80 43.8
Gohir.D08G028100 Gossypium hirsutum HOM05D004945 ORTHO05D005536 1.1e-09 67.4 91 41.8
SMO361G0023 Selaginella moellendorffii HOM05D004945 ORTHO05D005536 1.1e-09 67.4 77 37.7
AagrBONN_evm.TU.Sc2ySwM_344.1844 Anthoceros agrestis HOM05D053501 ORTHO05D005536 1.4e-09 67.0 74 37.8
Sed0005101 Sechium edule HOM05D004945 ORTHO05D005536 1.4e-09 67.0 88 39.8
Aa31LG2G20550 Aethionema arabicum HOM05D004945 ORTHO05D005536 1.9e-09 66.6 75 42.7
BcaB03g12628 Brassica carinata HOM05D004945 ORTHO05D005536 1.9e-09 66.6 77 40.3
MCO09G227 Micromonas commoda HOM05D004945 ORTHO05D005536 1.9e-09 66.6 91 40.7
BcaC01g01207 Brassica carinata HOM05D004945 ORTHO05D005536 2.4e-09 66.2 77 40.3
A08p19460 Brassica napus HOM05D004945 ORTHO05D005536 2.4e-09 66.2 77 40.3
C03p88960 Brassica napus HOM05D004945 ORTHO05D005536 2.4e-09 66.2 77 40.3
BolC3t21206H Brassica oleracea HOM05D004945 ORTHO05D005536 2.4e-09 66.2 77 40.3
BraA08t33908Z Brassica rapa HOM05D004945 ORTHO05D005536 2.4e-09 66.2 77 40.3
QL11p014429 Quercus lobata HOM05D004945 ORTHO05D005536 2.4e-09 66.2 81 43.2
Sp7g27810 Schrenkiella parvula HOM05D004945 ORTHO05D005536 2.4e-09 66.2 77 39.0
A03p59370 Brassica napus HOM05D004945 ORTHO05D005536 3.2e-09 65.9 77 40.3
C07p57400 Brassica napus HOM05D004945 ORTHO05D005536 3.2e-09 65.9 77 40.3
BolC7t46209H Brassica oleracea HOM05D004945 ORTHO05D005536 3.2e-09 65.9 77 40.3
BraA03t14994Z Brassica rapa HOM05D004945 ORTHO05D005536 3.2e-09 65.9 77 40.3
COL.COLO4_08559 Corchorus olitorius HOM05D004945 ORTHO05D005536 3.2e-09 65.9 89 40.4
COL.COLO4_22793 Corchorus olitorius HOM05D004945 ORTHO05D005536 3.2e-09 65.9 89 40.4
Gorai.004G025200 Gossypium raimondii HOM05D004945 ORTHO05D005536 3.2e-09 65.9 91 41.8
QL11p013920 Quercus lobata HOM05D004945 ORTHO05D005536 3.2e-09 65.9 81 43.2
Sed0015624 Sechium edule HOM05D004945 ORTHO05D005536 3.2e-09 65.9 88 38.6
THA.LOC104820006 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 3.2e-09 65.9 88 37.5
Haze_06091 Corylus avellana HOM05D004945 ORTHO05D005536 4.1e-09 65.5 81 44.4
RcHm_v2.0_Chr4g0399651 Rosa chinensis HOM05D004945 ORTHO05D005536 4.1e-09 65.5 81 43.2
ClCG06G013580 Citrullus lanatus HOM05D004945 ORTHO05D005536 5.4e-09 65.1 88 39.8
Eucgr.C00118 Eucalyptus grandis HOM05D004945 ORTHO05D005536 1.2e-08 63.9 82 39.0
Gohir.A08G017500 Gossypium hirsutum HOM05D004945 ORTHO05D005536 1.2e-08 63.9 91 40.7
Thecc.09G185900 Theobroma cacao HOM05D004945 ORTHO05D005536 1.2e-08 63.9 91 40.7
Cpa.g.sc95.12 Carica papaya HOM05D004945 ORTHO05D005536 1.6e-08 63.5 88 37.5
CsaV3_1G031860 Cucumis sativus L. HOM05D004945 ORTHO05D005536 1.6e-08 63.5 88 38.6
Thhalv10026677m.g Eutrema salsugineum HOM05D004945 ORTHO05D005536 1.6e-08 63.5 77 41.6
THA.LOC104803956 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 1.6e-08 63.5 77 41.6
THA.LOC104803979 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 1.6e-08 63.5 77 41.6
AT4G30010 Arabidopsis thaliana HOM05D004945 ORTHO05D005536 2.1e-08 63.2 77 39.0
Carub.0007s1064 Capsella rubella HOM05D004945 ORTHO05D005536 2.7e-08 62.8 77 39.0
Prupe.1G075600 Prunus persica HOM05D004945 ORTHO05D005536 2.7e-08 62.8 80 38.8
Actinidia38805 Actinidia chinensis HOM05D004945 ORTHO05D005536 3.5e-08 62.4 88 38.6
AL7G22230 Arabidopsis lyrata HOM05D004945 ORTHO05D005536 3.5e-08 62.4 77 39.0
FAN07G0945 Fragaria x ananassa HOM05D004945 ORTHO05D005536 3.5e-08 62.4 81 40.7
MD13G1241900 Malus domestica HOM05D004945 ORTHO05D005536 3.5e-08 62.4 80 38.8
Hma1.2p1_1111F.1_g258380 Hydrangea macrophylla HOM05D004945 ORTHO05D005536 4.6e-08 62.0 89 39.3
Sc15g0001010 Simmondsia chinensis HOM05D004945 ORTHO05D005536 4.6e-08 62.0 89 40.4
MD07G1027600 Malus domestica HOM05D004945 ORTHO05D005536 6.0e-08 61.6 80 38.8
THA.LOC104811777 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 6.0e-08 61.6 78 39.7
CANSAT11G0762 Cannabis sativa HOM05D004945 ORTHO05D005536 7.8e-08 61.2 80 40.0
CARHR237930 Cardamine hirsuta HOM05D004945 ORTHO05D005536 7.8e-08 61.2 77 37.7
Ciclev10010043m.g Citrus clementina HOM05D004945 ORTHO05D005536 7.8e-08 61.2 77 39.0
MELO3C017430.2 Cucumis melo HOM05D004945 ORTHO05D005536 7.8e-08 61.2 88 37.5
Duzib150G1578 Durio zibethinus HOM05D004945 ORTHO05D005536 7.8e-08 61.2 84 40.5
THA.LOC104814658 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 7.8e-08 61.2 88 35.2
TWI34G0510 Tripterygium wilfordii HOM05D004945 ORTHO05D005536 7.8e-08 61.2 82 40.2
CiPaw.09G075900 Carya illinoinensis HOM05D004945 ORTHO05D005536 1.0e-07 60.8 88 40.9
Hma1.2p1_0517F.1_g170730 Hydrangea macrophylla HOM05D004945 ORTHO05D005536 1.0e-07 60.8 88 38.6
Potri.018G142500 Populus trichocarpa HOM05D004945 ORTHO05D005536 1.0e-07 60.8 89 42.7
Sabra18G0116400 Salix brachista HOM05D004945 ORTHO05D005536 1.0e-07 60.8 88 42.0
Atru.chr7.757 Acer truncatum HOM05D004945 ORTHO05D005536 1.3e-07 60.5 84 40.5
Atru.chr7.779 Acer truncatum HOM05D004945 ORTHO05D005536 1.3e-07 60.5 84 40.5
CiPaw.10G063900 Carya illinoinensis HOM05D004945 ORTHO05D005536 1.3e-07 60.5 92 39.1
FvH4_4g07310 Fragaria vesca HOM05D004945 ORTHO05D005536 1.7e-07 60.1 81 38.3
Sc12g0011140 Simmondsia chinensis HOM05D004945 ORTHO05D005536 3.0e-07 59.3 89 39.3
Rhsim08G0249700 Rhododendron simsii HOM05D004945 ORTHO05D005536 3.9e-07 58.9 83 42.2
Cc04_g00230 Coffea canephora HOM05D004945 ORTHO05D005536 5.1e-07 58.5 85 36.5
Duzib150G0603 Durio zibethinus HOM05D004945 ORTHO05D005536 5.1e-07 58.5 91 38.5
Gohir.A13G208500 Gossypium hirsutum HOM05D004945 ORTHO05D005536 5.1e-07 58.5 91 36.3
Gohir.D13G212800 Gossypium hirsutum HOM05D004945 ORTHO05D005536 5.1e-07 58.5 91 36.3
Gorai.013G243200 Gossypium raimondii HOM05D004945 ORTHO05D005536 5.1e-07 58.5 91 36.3
Gohir.A13G208400 Gossypium hirsutum HOM05D004945 ORTHO05D005536 6.6e-07 58.2 91 36.3
SHI03058 Sapria himalayana HOM05D004945 ORTHO05D005536 8.6e-07 57.8 84 38.1
QL11p013931 Quercus lobata HOM05D004945 ORTHO05D005536 1.1e-06 57.4 81 39.5
ATR0626G412 Amborella trichopoda HOM05D004945 ORTHO05D005536 1.5e-06 57.0 78 38.5
Ca_02105_v3 Cicer arietinum L. HOM05D004945 ORTHO05D005536 1.5e-06 57.0 74 40.5
Gohir.D13G212900 Gossypium hirsutum HOM05D004945 ORTHO05D005536 1.5e-06 57.0 91 36.3
Aqoxy7G02794 Aquilegia oxysepala HOM05D004945 ORTHO05D005536 1.9e-06 56.6 89 36.0
Os02g0175800 Oryza sativa ssp. japonica HOM05D004945 ORTHO05D005536 1.9e-06 56.6 86 33.7
TPR.G7575 Trifolium pratense HOM05D004945 ORTHO05D005536 1.9e-06 56.6 74 41.9
Ah.13g075140 Amaranthus hybridus HOM05D004945 ORTHO05D005536 2.5e-06 56.2 87 37.9
PSO063G0987 Papaver somniferum HOM05D004945 ORTHO05D005536 3.3e-06 55.8 86 37.2
PSO170G0997 Papaver somniferum HOM05D004945 ORTHO05D005536 4.3e-06 55.5 86 37.2
Solyc06g063310.2 Solanum lycopersicum HOM05D004945 ORTHO05D005536 4.3e-06 55.5 90 38.9
Sopen06g022780 Solanum pennellii HOM05D004945 ORTHO05D005536 4.3e-06 55.5 90 38.9
Psat1g144160 Pisum sativum HOM05D004945 ORTHO05D005536 5.6e-06 55.1 74 39.2
Psat1g144120 Pisum sativum HOM05D004945 ORTHO05D005536 7.3e-06 54.7 74 39.2
Aqoxy1G01195 Aquilegia oxysepala HOM05D004945 ORTHO05D005536 9.6e-06 54.3 86 33.7
Migut.D00890 Erythranthe guttata HOM05D004945 ORTHO05D005536 9.6e-06 54.3 89 31.5
Medtr2g037990 Medicago truncatula HOM05D004945 ORTHO05D005536 9.6e-06 54.3 74 39.2


User provided reference genes

Program Settings