Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c5_15420 Physcomitrium patens HOM05D003479 ORTHO05D004659 0.0e+00 2557.7 1266 100.0
Pp3c25_5940 Physcomitrium patens HOM05D003479 ORTHO05D004659 0.0e+00 2205.3 1266 86.2
Mapoly0022s0091 Marchantia polymorpha HOM05D003479 ORTHO05D004659 0.0e+00 1793.9 1280 70.2
AagrBONN_evm.TU.Sc2ySwM_344.258 Anthoceros agrestis HOM05D003479 ORTHO05D004659 0.0e+00 1611.3 1148 70.6
MBI18_g03887_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 0.0e+00 1611.3 1277 64.0
SMO367G0831 Selaginella moellendorffii HOM05D003479 ORTHO05D004659 0.0e+00 1601.3 1275 64.1
ATR0693G109 Amborella trichopoda HOM05D003479 ORTHO05D004659 0.0e+00 1599.3 1271 63.2
Aqoxy5G02886 Aquilegia oxysepala HOM05D003479 ORTHO05D004659 0.0e+00 1598.2 1272 63.4
TAR636G1704 Trochodendron aralioides HOM05D003479 ORTHO05D004659 0.0e+00 1588.2 1278 63.4
Cfa004931 Carpinus fangiana HOM05D003479 ORTHO05D004659 0.0e+00 1582.8 1270 63.1
arahy.Tifrunner.gnm1.ann1.37N44H Arachis hypogaea HOM05D003479 ORTHO05D004659 0.0e+00 1581.2 1272 62.7
CANSAT25G3435 Cannabis sativa HOM05D003479 ORTHO05D004659 0.0e+00 1572.8 1267 62.6
Manes.01G236800 Manihot esculenta HOM05D003479 ORTHO05D004659 0.0e+00 1572.0 1273 62.3
Ciclev10018541m.g Citrus clementina HOM05D003479 ORTHO05D004659 0.0e+00 1569.3 1270 61.7
Migut.D00003 Erythranthe guttata HOM05D003479 ORTHO05D004659 0.0e+00 1568.9 1267 63.4
Thecc.01G328500 Theobroma cacao HOM05D003479 ORTHO05D004659 0.0e+00 1568.1 1273 62.5
Actinidia06417 Actinidia chinensis HOM05D003479 ORTHO05D004659 0.0e+00 1567.7 1282 62.7
Dinv12068 Davidia involucrata HOM05D003479 ORTHO05D004659 0.0e+00 1567.7 1273 62.1
arahy.Tifrunner.gnm1.ann1.RIE5PZ Arachis hypogaea HOM05D003479 ORTHO05D004659 0.0e+00 1567.0 1297 61.4
Atru.chr5.824 Acer truncatum HOM05D003479 ORTHO05D004659 0.0e+00 1565.8 1268 61.8
Lalb_Chr04g0260231 Lupinus albus HOM05D003479 ORTHO05D004659 0.0e+00 1563.1 1270 62.1
Prupe.3G000300 Prunus persica HOM05D003479 ORTHO05D004659 0.0e+00 1562.0 1273 62.2
TWI14G0833 Tripterygium wilfordii HOM05D003479 ORTHO05D004659 0.0e+00 1561.6 1268 62.6
MD17G1285800 Malus domestica HOM05D003479 ORTHO05D004659 0.0e+00 1560.8 1271 61.9
PSO170G1939 Papaver somniferum HOM05D003479 ORTHO05D004659 0.0e+00 1560.8 1282 61.6
PSO357G0518 Papaver somniferum HOM05D003479 ORTHO05D004659 0.0e+00 1560.8 1281 61.8
GSVIVG01028271001 Vitis vinifera HOM05D003479 ORTHO05D004659 0.0e+00 1560.8 1271 62.8
Lalb_Chr18g0046291 Lupinus albus HOM05D003479 ORTHO05D004659 0.0e+00 1556.2 1270 61.9
Duzib138G1436 Durio zibethinus HOM05D003479 ORTHO05D004659 0.0e+00 1552.7 1266 62.1
Lj5g0020342 Lotus japonicus HOM05D003479 ORTHO05D004659 0.0e+00 1552.7 1275 62.0
Gohir.A08G122400 Gossypium hirsutum HOM05D003479 ORTHO05D004659 0.0e+00 1552.3 1272 61.4
CiPaw.07G128000 Carya illinoinensis HOM05D003479 ORTHO05D004659 0.0e+00 1551.6 1272 61.8
Ca_10221_v3 Cicer arietinum L. HOM05D003479 ORTHO05D004659 0.0e+00 1551.6 1275 62.2
RcHm_v2.0_Chr3g0485491 Rosa chinensis HOM05D003479 ORTHO05D004659 0.0e+00 1550.8 1272 62.1
Gorai.004G044600 Gossypium raimondii HOM05D003479 ORTHO05D004659 0.0e+00 1550.0 1269 61.8
Potri.014G109900 Populus trichocarpa HOM05D003479 ORTHO05D004659 0.0e+00 1550.0 1268 61.8
Cc01_g21710 Coffea canephora HOM05D003479 ORTHO05D004659 0.0e+00 1549.6 1275 62.4
Gohir.A08G035200 Gossypium hirsutum HOM05D003479 ORTHO05D004659 0.0e+00 1549.6 1269 61.5
Phvul.001G220000 Phaseolus vulgaris HOM05D003479 ORTHO05D004659 0.0e+00 1549.3 1267 62.1
Gorai.004G148300 Gossypium raimondii HOM05D003479 ORTHO05D004659 0.0e+00 1548.5 1275 61.2
Glyma.03G226200 Glycine max HOM05D003479 ORTHO05D004659 0.0e+00 1546.2 1268 61.8
Psat6g157360 Pisum sativum HOM05D003479 ORTHO05D004659 0.0e+00 1545.4 1271 62.0
FvH4_1g26030 Fragaria vesca HOM05D003479 ORTHO05D004659 0.0e+00 1544.6 1274 61.9
Glyma.19G223200 Glycine max HOM05D003479 ORTHO05D004659 0.0e+00 1543.9 1270 61.6
Medtr1g085300 Medicago truncatula HOM05D003479 ORTHO05D004659 0.0e+00 1543.5 1274 61.7
Potri.002G184400 Populus trichocarpa HOM05D003479 ORTHO05D004659 0.0e+00 1541.9 1268 61.8
Sopen01g030540 Solanum pennellii HOM05D003479 ORTHO05D004659 0.0e+00 1541.6 1276 62.1
Solyc01g068590.4 Solanum lycopersicum HOM05D003479 ORTHO05D004659 0.0e+00 1541.2 1283 61.6
THA.LOC104817410 Tarenaya hassleriana HOM05D003479 ORTHO05D004659 0.0e+00 1541.2 1276 62.1
AT3G62010 Arabidopsis thaliana HOM05D003479 ORTHO05D004659 0.0e+00 1537.7 1274 61.7
CARHR172360 Cardamine hirsuta HOM05D003479 ORTHO05D004659 0.0e+00 1537.3 1277 61.7
Gorai.007G115700 Gossypium raimondii HOM05D003479 ORTHO05D004659 0.0e+00 1536.9 1270 61.1
Nitab4.5_0002103g0090 Nicotiana tabacum HOM05D003479 ORTHO05D004659 0.0e+00 1536.5 1288 61.3
Glyma.20G089300 Glycine max HOM05D003479 ORTHO05D004659 0.0e+00 1535.0 1270 60.9
Gohir.D11G107800 Gossypium hirsutum HOM05D003479 ORTHO05D004659 0.0e+00 1535.0 1270 61.3
Medtr7g111030 Medicago truncatula HOM05D003479 ORTHO05D004659 0.0e+00 1533.9 1268 61.6
Os03g0586700 Oryza sativa ssp. japonica HOM05D003479 ORTHO05D004659 0.0e+00 1531.5 1277 61.5
EL10As5g23623 Beta vulgaris HOM05D003479 ORTHO05D004659 0.0e+00 1530.8 1285 61.6
BcaC07g40697 Brassica carinata HOM05D003479 ORTHO05D004659 0.0e+00 1530.8 1276 61.8
Gohir.A11G103400 Gossypium hirsutum HOM05D003479 ORTHO05D004659 0.0e+00 1529.2 1270 61.0
A09p54080 Brassica napus HOM05D003479 ORTHO05D004659 0.0e+00 1527.7 1277 61.7
BraA09t40821Z Brassica rapa HOM05D003479 ORTHO05D004659 0.0e+00 1527.7 1277 61.7
Lsat_1_v5_gn_9_7140 Lactuca sativa HOM05D003479 ORTHO05D004659 0.0e+00 1527.3 1276 61.5
C08p36970 Brassica napus HOM05D003479 ORTHO05D004659 0.0e+00 1526.1 1277 61.8
HanXRQChr15g0464511 Helianthus annuus HOM05D003479 ORTHO05D004659 0.0e+00 1525.8 1280 61.1
BolC8t51274H Brassica oleracea HOM05D003479 ORTHO05D004659 0.0e+00 1524.6 1277 61.6
Nn4g25261 Nelumbo nucifera HOM05D003479 ORTHO05D004659 0.0e+00 1524.6 1224 63.4
AL5G44630 Arabidopsis lyrata HOM05D003479 ORTHO05D004659 0.0e+00 1523.8 1276 61.3
THA.LOC104802111 Tarenaya hassleriana HOM05D003479 ORTHO05D004659 0.0e+00 1523.1 1275 61.2
Psat3g015760 Pisum sativum HOM05D003479 ORTHO05D004659 0.0e+00 1522.7 1262 61.2
Thhalv10005753m.g Eutrema salsugineum HOM05D003479 ORTHO05D004659 0.0e+00 1518.8 1276 61.4
TPR.G3092 Trifolium pratense HOM05D003479 ORTHO05D004659 0.0e+00 1518.8 1238 62.4
Carub.0005s2876 Capsella rubella HOM05D003479 ORTHO05D004659 0.0e+00 1516.9 1275 60.9
Eucgr.K00546 Eucalyptus grandis HOM05D003479 ORTHO05D004659 0.0e+00 1516.5 1271 60.2
Sp5g01350 Schrenkiella parvula HOM05D003479 ORTHO05D004659 0.0e+00 1515.4 1276 61.0
CsaV3_6G000310 Cucumis sativus L. HOM05D003479 ORTHO05D004659 0.0e+00 1510.7 1265 61.2
FAN26G2262 Fragaria x ananassa HOM05D003479 ORTHO05D004659 0.0e+00 1510.7 1275 60.9
FAN28G1829 Fragaria x ananassa HOM05D003479 ORTHO05D004659 0.0e+00 1508.8 1275 61.2
FAN23G2105 Fragaria x ananassa HOM05D003479 ORTHO05D004659 0.0e+00 1508.4 1275 61.1
CiPaw.08G080000 Carya illinoinensis HOM05D003479 ORTHO05D004659 0.0e+00 1508.0 1231 62.1
Aa31LG10G15990 Aethionema arabicum HOM05D003479 ORTHO05D004659 0.0e+00 1502.6 1301 59.7
Zm00001eb049240 Zea mays HOM05D003479 ORTHO05D004659 0.0e+00 1501.1 1269 60.8
Peaxi162Scf00309g00510 Petunia axillaris HOM05D003479 ORTHO05D004659 0.0e+00 1499.6 1351 58.5
VMungo1383G0820 Vigna mungo HOM05D003479 ORTHO05D004659 0.0e+00 1498.0 1219 62.6
FAN19G1496 Fragaria x ananassa HOM05D003479 ORTHO05D004659 0.0e+00 1491.1 1307 59.3
Eucgr.K00763 Eucalyptus grandis HOM05D003479 ORTHO05D004659 0.0e+00 1490.3 1276 59.6
ECA247G3194 Erigeron canadensis HOM05D003479 ORTHO05D004659 0.0e+00 1483.0 1243 61.1
Cpa.g.sc57.54 Carica papaya HOM05D003479 ORTHO05D004659 0.0e+00 1481.5 1288 59.9
AUR62011690 Chenopodium quinoa HOM05D003479 ORTHO05D004659 0.0e+00 1481.1 1236 62.3
Gohir.D08G143700 Gossypium hirsutum HOM05D003479 ORTHO05D004659 0.0e+00 1470.3 1214 61.1
COL.COLO4_23088 Corchorus olitorius HOM05D003479 ORTHO05D004659 0.0e+00 1452.6 1215 61.5
vmacro02352 Vaccinium macrocarpon HOM05D003479 ORTHO05D004659 0.0e+00 1451.8 1392 55.0
Sabra14G0081100 Salix brachista HOM05D003479 ORTHO05D004659 0.0e+00 1450.3 1217 60.8
Ca_09257_v3 Cicer arietinum L. HOM05D003479 ORTHO05D004659 0.0e+00 1436.8 1262 59.6
Ah.02g112690 Amaranthus hybridus HOM05D003479 ORTHO05D004659 0.0e+00 1431.4 1268 58.7
DCAR_012290 Daucus carota HOM05D003479 ORTHO05D004659 0.0e+00 1415.2 1268 57.6
DCAR_018236 Daucus carota HOM05D003479 ORTHO05D004659 0.0e+00 1414.1 1216 59.8
MELO3C021223.2 Cucumis melo HOM05D003479 ORTHO05D004659 0.0e+00 1390.2 1384 54.5
CSS0000124 Camellia sinensis var. sinensis HOM05D003479 ORTHO05D004659 0.0e+00 1383.6 1086 64.0
Gohir.D08G045766 Gossypium hirsutum HOM05D003479 ORTHO05D004659 0.0e+00 1375.5 1269 57.1
Glyma.10G140500 Glycine max HOM05D003479 ORTHO05D004659 0.0e+00 1364.4 1095 62.8
SGA_v2.0_scaffold80G25672 Striga asiatica HOM05D003479 ORTHO05D004659 0.0e+00 1355.1 1146 61.3
QL09p037617 Quercus lobata HOM05D003479 ORTHO05D004659 0.0e+00 1353.2 1064 63.5
Sc05g0000020 Simmondsia chinensis HOM05D003479 ORTHO05D004659 0.0e+00 1345.1 1162 60.1
Haze_05171 Corylus avellana HOM05D003479 ORTHO05D004659 0.0e+00 1336.2 1270 56.1
Hund11617 Selenicereus undatus HOM05D003479 ORTHO05D004659 0.0e+00 1325.8 1191 58.9
Sed0010094 Sechium edule HOM05D003479 ORTHO05D004659 0.0e+00 1319.7 1081 61.5
Oeu052594.2 Olea europaea HOM05D003479 ORTHO05D004659 0.0e+00 1284.2 1387 52.0
QL09p037594 Quercus lobata HOM05D003479 ORTHO05D004659 0.0e+00 1280.8 1155 57.7
ClCG06G004120 Citrullus lanatus HOM05D003479 ORTHO05D004659 0.0e+00 1262.3 1086 59.9
Rhsim01G0001400 Rhododendron simsii HOM05D003479 ORTHO05D004659 0.0e+00 1182.2 1093 57.5
BcaC07g42626 Brassica carinata HOM05D003479 ORTHO05D004659 0.0e+00 1095.9 846 65.8
FAN23G1814 Fragaria x ananassa HOM05D003479 ORTHO05D004659 0.0e+00 1091.6 1023 57.4
Nitab4.5_0001628g0060 Nicotiana tabacum HOM05D003479 ORTHO05D004659 3.5e-311 1072.0 952 58.9
AUR62024549 Chenopodium quinoa HOM05D003479 ORTHO05D004659 4.9e-281 971.8 917 57.5
Lju2566C1G2 Lonicera japonica HOM05D003479 ORTHO05D004659 2.4e-264 916.4 848 56.4
A01p23620 Brassica napus HOM05D003479 ORTHO05D004659 9.6e-261 904.4 1081 48.8
C01p29360 Brassica napus HOM05D003479 ORTHO05D004659 1.0e-254 884.4 1083 48.0
BcaC09g50076 Brassica carinata HOM05D003479 ORTHO05D004659 3.0e-246 856.3 923 52.3
BolC1t02872H Brassica oleracea HOM05D003479 ORTHO05D004659 3.9e-246 855.9 1012 49.2
Gohir.D08G045832 Gossypium hirsutum HOM05D003479 ORTHO05D004659 3.0e-222 776.5 722 56.4
CDE11G0667 Ceratophyllum demersum HOM05D003479 ORTHO05D004659 5.2e-214 749.2 728 55.6
CDE11G0371 Ceratophyllum demersum HOM05D003479 ORTHO05D004659 5.7e-197 692.6 539 65.3
HPP92_010564 Vanilla planifolia HOM05D003479 ORTHO05D004659 2.3e-185 654.1 874 43.7
Cre01.g054800 Chlamydomonas reinhardtii HOM05D003479 ORTHO05D004659 1.6e-175 621.3 1457 32.5
unitig_578.g16647 Utricularia gibba HOM05D003479 ORTHO05D004659 1.9e-160 571.2 532 56.8
BraA01t02268Z Brassica rapa HOM05D003479 ORTHO05D004659 9.0e-150 535.8 449 60.6
HPP92_010563 Vanilla planifolia HOM05D003479 ORTHO05D004659 3.4e-149 533.9 363 71.3
MD09G1292000 Malus domestica HOM05D003479 ORTHO05D004659 2.7e-122 444.5 645 42.9
SEGI_16825 Sequoiadendron giganteum HOM05D003479 ORTHO05D004659 3.0e-105 387.9 267 70.0
AUR62024550 Chenopodium quinoa HOM05D003479 ORTHO05D004659 6.3e-103 380.2 317 61.2
HPP92_010570 Vanilla planifolia HOM05D003479 ORTHO05D004659 1.1e-96 359.4 416 50.2
BolC1t02863H Brassica oleracea HOM05D003479 ORTHO05D004659 1.9e-91 342.0 304 56.9
SEGI_06113 Sequoiadendron giganteum HOM05D003479 ORTHO05D004659 8.8e-89 333.2 279 62.0
Rhsim01G0001500 Rhododendron simsii HOM05D003479 ORTHO05D004659 1.8e-86 325.5 209 73.7
Nitab4.5_0001628g0070 Nicotiana tabacum HOM05D003479 ORTHO05D004659 4.1e-86 324.3 209 73.7
unitig_578.g16649 Utricularia gibba HOM05D003479 ORTHO05D004659 1.4e-73 282.7 343 46.4
TPR.G23936 Trifolium pratense HOM05D003479 ORTHO05D004659 1.3e-71 276.2 183 70.5
Eucgr.K00541 Eucalyptus grandis HOM05D003479 ORTHO05D004659 1.1e-70 273.1 201 65.7
Sabra02G0131400 Salix brachista HOM05D003479 ORTHO05D004659 1.1e-67 263.1 173 70.5
Gohir.A11G116300 Gossypium hirsutum HOM05D003479 ORTHO05D004659 2.3e-60 238.8 342 38.0
Lsat_1_v5_gn_2_36600 Lactuca sativa HOM05D003479 ORTHO05D004659 1.0e-52 213.4 445 34.4
SEGI_12620 Sequoiadendron giganteum HOM05D003479 ORTHO05D004659 9.9e-48 196.8 137 70.8
unitig_578.g16648 Utricularia gibba HOM05D003479 ORTHO05D004659 6.6e-44 184.1 137 63.5
Lju2566A0G21 Lonicera japonica HOM05D003479 ORTHO05D004659 5.6e-43 181.0 125 68.0
MD09G1291900 Malus domestica HOM05D003479 ORTHO05D004659 1.5e-40 172.9 185 49.2
Sed0003575 Sechium edule HOM05D003479 ORTHO05D019150 3.9e-36 158.3 169 50.9
Lsat_1_v5_gn_6_44740 Lactuca sativa HOM05D003479 ORTHO05D004659 6.6e-36 157.5 454 29.1
Lsat_1_v5_gn_6_105821 Lactuca sativa HOM05D003479 ORTHO05D016156 7.3e-35 154.1 448 29.2
BcaC09g50075 Brassica carinata HOM05D003479 ORTHO05D004659 4.8e-34 151.4 130 55.4
CSS0034529 Camellia sinensis var. sinensis HOM05D003479 ORTHO05D004659 6.2e-34 151.0 184 45.7
unitig_578.g16646 Utricularia gibba HOM05D003479 ORTHO05D004659 1.4e-33 149.8 169 47.9
Lsat_1_v5_gn_9_52321 Lactuca sativa HOM05D003479 ORTHO05D004659 2.0e-32 146.0 441 28.8
CDE05G2601 Ceratophyllum demersum HOM05D003479 ORTHO05D004659 3.3e-27 128.6 146 51.4
CAN.G179.24 Capsicum annuum HOM05D003479 ORTHO05D004659 9.6e-27 127.1 81 72.8
BolC1t02865H Brassica oleracea HOM05D003479 ORTHO05D004659 6.2e-26 124.4 110 53.6
BolC1t02870H Brassica oleracea HOM05D003479 ORTHO05D004659 6.2e-26 124.4 110 53.6
BolC1t02871H Brassica oleracea HOM05D003479 ORTHO05D004659 6.2e-26 124.4 110 53.6
MBI11_g09044_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 3.8e-23 115.2 94 54.3
CAN.G179.23 Capsicum annuum HOM05D003479 ORTHO05D004659 1.6e-21 109.8 94 56.4
Lsat_1_v5_gn_2_13561 Lactuca sativa HOM05D003479 ORTHO05D004659 2.1e-21 109.4 109 52.3
MBI11_g43863_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 1.3e-20 106.7 76 60.5
MBI11_g09870_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 1.8e-20 106.3 76 60.5
MBI11_g41071_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 2.3e-20 105.9 76 59.2
MBI11_g41070_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 3.0e-20 105.5 73 63.0
MBI11_g39904_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 3.9e-20 105.1 73 61.6
HPP92_010572 Vanilla planifolia HOM05D003479 ORTHO05D004659 8.7e-20 104.0 105 51.4
Lju2566C0G3 Lonicera japonica HOM05D001538 ORTHO05D011045 1.8e-17 96.3 60 75.0
Lju1669C0T7 Lonicera japonica HOM05D003479 ORTHO05D004659 2.2e-15 89.4 50 76.0
Lsat_1_v5_gn_8_60120 Lactuca sativa HOM05D003479 ORTHO05D016156 3.8e-15 88.6 100 50.0
HPP92_010571 Vanilla planifolia HOM05D003479 ORTHO05D004659 6.5e-15 87.8 139 43.2
FAN20G0117 Fragaria x ananassa HOM05D003479 ORTHO05D019150 6.7e-12 77.8 136 37.5
FAN07G2139 Fragaria x ananassa HOM05D003479 ORTHO05D019150 2.4e-09 69.3 82 43.9
FAN21G3631 Fragaria x ananassa HOM05D003479 ORTHO05D019150 3.1e-09 68.9 89 40.4
RcHm_v2.0_Chr3g0485471 Rosa chinensis HOM05D003479 ORTHO05D004659 3.1e-09 68.9 46 65.2
MBI08_g20552_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D000004 2.6e-08 65.9 45 73.3
BolC8t51271H Brassica oleracea HOM05D003479 ORTHO05D040158 2.9e-07 62.4 44 61.4
PRCOL_00006887 Prasinoderma coloniale HOM05D000749 ORTHO05D001296 1.1e-06 60.5 264 29.2
FAN14G2177 Fragaria x ananassa HOM05D003479 ORTHO05D015055 5.5e-06 58.2 46 58.7
FAN07G2883 Fragaria x ananassa HOM05D003479 ORTHO05D019150 7.2e-06 57.8 121 31.4


User provided reference genes

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