Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c5_15280 Physcomitrium patens HOM05D004945 ORTHO05D005536 1.4e-44 182.6 92 100.0
Mapoly0011s0061 Marchantia polymorpha HOM05D004945 ORTHO05D005536 2.1e-24 115.5 77 66.2
Pp3c5_15650 Physcomitrium patens HOM05D004945 ORTHO05D005536 9.8e-22 106.7 79 58.2
Pp3c25_5460 Physcomitrium patens HOM05D004945 ORTHO05D005536 4.8e-21 104.4 82 57.3
Pp3c25_5480 Physcomitrium patens HOM05D004945 ORTHO05D005536 4.8e-21 104.4 82 57.3
CBR_g50842 Chara braunii HOM05D004945 ORTHO05D005536 3.5e-19 98.2 83 53.0
AagrBONN_evm.TU.Sc2ySwM_344.4974 Anthoceros agrestis HOM05D004945 ORTHO05D005536 1.1e-17 93.2 79 53.2
AagrBONN_evm.TU.Sc2ySwM_228.1937 Anthoceros agrestis HOM05D004945 ORTHO05D005536 2.1e-16 89.0 82 43.9
AagrBONN_evm.TU.Sc2ySwM_344.1844 Anthoceros agrestis HOM05D053501 ORTHO05D005536 7.8e-11 70.5 83 36.1
Manes.06G020000 Manihot esculenta HOM05D004945 ORTHO05D005536 3.3e-09 65.1 82 35.4
SMO361G0023 Selaginella moellendorffii HOM05D004945 ORTHO05D005536 3.3e-09 65.1 84 34.5
Hma1.2p1_1111F.1_g258380 Hydrangea macrophylla HOM05D004945 ORTHO05D005536 4.3e-09 64.7 83 36.1
Gohir.D08G028100 Gossypium hirsutum HOM05D004945 ORTHO05D005536 1.6e-08 62.8 82 35.4
Sc15g0001010 Simmondsia chinensis HOM05D004945 ORTHO05D005536 1.6e-08 62.8 83 37.3
ClCG06G013580 Citrullus lanatus HOM05D004945 ORTHO05D005536 2.1e-08 62.4 82 34.1
Gohir.A08G017500 Gossypium hirsutum HOM05D004945 ORTHO05D005536 2.1e-08 62.4 78 38.5
CDE04G2745 Ceratophyllum demersum HOM05D004945 ORTHO05D005536 2.8e-08 62.0 82 36.6
Duzib150G1578 Durio zibethinus HOM05D004945 ORTHO05D005536 2.8e-08 62.0 82 37.8
COL.COLO4_22793 Corchorus olitorius HOM05D004945 ORTHO05D005536 3.6e-08 61.6 82 35.4
Gohir.A13G208500 Gossypium hirsutum HOM05D004945 ORTHO05D005536 3.6e-08 61.6 82 34.1
MCO09G227 Micromonas commoda HOM05D004945 ORTHO05D005536 3.6e-08 61.6 77 36.4
Gorai.004G025200 Gossypium raimondii HOM05D004945 ORTHO05D005536 4.7e-08 61.2 82 35.4
COL.COLO4_08559 Corchorus olitorius HOM05D004945 ORTHO05D005536 6.1e-08 60.8 82 35.4
Gohir.D13G212900 Gossypium hirsutum HOM05D004945 ORTHO05D005536 1.0e-07 60.1 80 35.0
PGR142G1282 Punica granatum HOM05D004945 ORTHO05D005536 1.0e-07 60.1 82 32.9
Sed0005101 Sechium edule HOM05D004945 ORTHO05D005536 1.0e-07 60.1 82 32.9
TAR636G3350 Trochodendron aralioides HOM05D004945 ORTHO05D005536 1.0e-07 60.1 82 34.1
Ah.13g075140 Amaranthus hybridus HOM05D004945 ORTHO05D005536 1.4e-07 59.7 83 33.7
Gohir.A13G208400 Gossypium hirsutum HOM05D004945 ORTHO05D005536 1.4e-07 59.7 86 36.0
Gohir.D13G212800 Gossypium hirsutum HOM05D004945 ORTHO05D005536 1.4e-07 59.7 82 34.1
Gorai.013G243200 Gossypium raimondii HOM05D004945 ORTHO05D005536 1.4e-07 59.7 82 34.1
RcHm_v2.0_Chr4g0399651 Rosa chinensis HOM05D004945 ORTHO05D005536 1.4e-07 59.7 77 35.1
Cpa.g.sc95.12 Carica papaya HOM05D004945 ORTHO05D005536 1.8e-07 59.3 73 34.2
Sed0015624 Sechium edule HOM05D004945 ORTHO05D005536 1.8e-07 59.3 82 32.9
FAN07G0945 Fragaria x ananassa HOM05D004945 ORTHO05D005536 2.3e-07 58.9 77 35.1
PSO063G0987 Papaver somniferum HOM05D004945 ORTHO05D005536 2.3e-07 58.9 85 35.3
Prupe.1G075600 Prunus persica HOM05D004945 ORTHO05D005536 2.3e-07 58.9 82 31.7
QL11p014429 Quercus lobata HOM05D004945 ORTHO05D005536 2.3e-07 58.9 82 31.7
Thecc.09G185900 Theobroma cacao HOM05D004945 ORTHO05D005536 2.3e-07 58.9 82 32.9
TWI63G0641 Tripterygium wilfordii HOM05D004945 ORTHO05D005536 2.3e-07 58.9 92 33.7
Atru.chr7.757 Acer truncatum HOM05D004945 ORTHO05D005536 3.0e-07 58.5 82 31.7
Atru.chr7.779 Acer truncatum HOM05D004945 ORTHO05D005536 3.0e-07 58.5 82 31.7
Actinidia38805 Actinidia chinensis HOM05D004945 ORTHO05D005536 3.0e-07 58.5 82 32.9
Haze_06091 Corylus avellana HOM05D004945 ORTHO05D005536 3.0e-07 58.5 77 32.5
PSO170G0997 Papaver somniferum HOM05D004945 ORTHO05D005536 3.0e-07 58.5 85 35.3
QL11p013920 Quercus lobata HOM05D004945 ORTHO05D005536 3.0e-07 58.5 82 31.7
Rhsim08G0249700 Rhododendron simsii HOM05D004945 ORTHO05D005536 3.0e-07 58.5 87 31.0
Sc12g0011140 Simmondsia chinensis HOM05D004945 ORTHO05D005536 3.0e-07 58.5 83 33.7
Eucgr.C00118 Eucalyptus grandis HOM05D004945 ORTHO05D005536 4.0e-07 58.2 82 30.5
Os02g0175800 Oryza sativa ssp. japonica HOM05D004945 ORTHO05D005536 4.0e-07 58.2 87 32.2
CsaV3_1G031860 Cucumis sativus L. HOM05D004945 ORTHO05D005536 5.2e-07 57.8 82 32.9
THA.LOC104820006 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 5.2e-07 57.8 82 34.1
AagrBONN_evm.TU.Sc2ySwM_344.1841 Anthoceros agrestis HOM05D053501 ORTHO05D005536 6.8e-07 57.4 67 38.8
BcaNung00508 Brassica carinata HOM05D004945 ORTHO05D005536 6.8e-07 57.4 78 33.3
FvH4_4g07310 Fragaria vesca HOM05D004945 ORTHO05D005536 6.8e-07 57.4 77 35.1
MD07G1027600 Malus domestica HOM05D004945 ORTHO05D005536 6.8e-07 57.4 82 32.9
Potri.006G075600 Populus trichocarpa HOM05D004945 ORTHO05D005536 6.8e-07 57.4 82 30.5
SHI03058 Sapria himalayana HOM05D004945 ORTHO05D005536 6.8e-07 57.4 80 35.0
TAR625G1304 Trochodendron aralioides HOM05D004945 ORTHO05D005536 6.8e-07 57.4 82 32.9
Ca_02105_v3 Cicer arietinum L. HOM05D004945 ORTHO05D005536 8.9e-07 57.0 82 32.9
Ciclev10010043m.g Citrus clementina HOM05D004945 ORTHO05D005536 8.9e-07 57.0 82 30.5
Migut.D00890 Erythranthe guttata HOM05D004945 ORTHO05D005536 8.9e-07 57.0 82 31.7
Solyc06g063310.2 Solanum lycopersicum HOM05D004945 ORTHO05D005536 8.9e-07 57.0 82 31.7
Sopen06g022780 Solanum pennellii HOM05D004945 ORTHO05D005536 8.9e-07 57.0 82 31.7
Duzib150G0603 Durio zibethinus HOM05D004945 ORTHO05D005536 1.2e-06 56.6 73 35.6
Psat1g144160 Pisum sativum HOM05D004945 ORTHO05D005536 1.2e-06 56.6 82 32.9
TWI34G0510 Tripterygium wilfordii HOM05D004945 ORTHO05D005536 1.2e-06 56.6 92 31.5
arahy.Tifrunner.gnm1.ann1.M8DR4H Arachis hypogaea HOM05D004945 ORTHO05D005536 1.5e-06 56.2 84 33.3
arahy.Tifrunner.gnm1.ann1.ZYC9F0 Arachis hypogaea HOM05D004945 ORTHO05D005536 1.5e-06 56.2 84 33.3
CANSAT11G0762 Cannabis sativa HOM05D004945 ORTHO05D005536 1.5e-06 56.2 77 35.1
Ah.04g153390 Amaranthus hybridus HOM05D004945 ORTHO05D005536 2.0e-06 55.8 83 31.3
ATR0626G412 Amborella trichopoda HOM05D004945 ORTHO05D005536 2.0e-06 55.8 89 27.0
A03p59370 Brassica napus HOM05D004945 ORTHO05D005536 2.0e-06 55.8 78 32.1
C07p57400 Brassica napus HOM05D004945 ORTHO05D005536 2.0e-06 55.8 78 32.1
BolC7t46209H Brassica oleracea HOM05D004945 ORTHO05D005536 2.0e-06 55.8 78 32.1
BraA03t14994Z Brassica rapa HOM05D004945 ORTHO05D005536 2.0e-06 55.8 78 32.1
MELO3C017430.2 Cucumis melo HOM05D004945 ORTHO05D005536 2.0e-06 55.8 82 31.7
Sabra18G0116400 Salix brachista HOM05D004945 ORTHO05D005536 2.0e-06 55.8 82 32.9
Sp7g27810 Schrenkiella parvula HOM05D004945 ORTHO05D005536 2.0e-06 55.8 82 30.5
CiPaw.10G063900 Carya illinoinensis HOM05D004945 ORTHO05D005536 2.6e-06 55.5 82 30.5
MD10G1108200 Malus domestica HOM05D004945 ORTHO05D005536 2.6e-06 55.5 83 34.9
MD13G1241900 Malus domestica HOM05D004945 ORTHO05D005536 2.6e-06 55.5 82 32.9
Potri.018G142500 Populus trichocarpa HOM05D004945 ORTHO05D005536 2.6e-06 55.5 82 31.7
THA.LOC104803956 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 2.6e-06 55.5 78 35.9
THA.LOC104803979 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 2.6e-06 55.5 78 35.9
BcaC01g01207 Brassica carinata HOM05D004945 ORTHO05D005536 3.4e-06 55.1 82 29.3
A08p19460 Brassica napus HOM05D004945 ORTHO05D005536 3.4e-06 55.1 82 29.3
C03p88960 Brassica napus HOM05D004945 ORTHO05D005536 3.4e-06 55.1 82 29.3
BolC3t21206H Brassica oleracea HOM05D004945 ORTHO05D005536 3.4e-06 55.1 82 29.3
BraA08t33908Z Brassica rapa HOM05D004945 ORTHO05D005536 3.4e-06 55.1 82 29.3
Lalb_Chr11g0074741 Lupinus albus HOM05D004945 ORTHO05D005536 3.4e-06 55.1 83 31.3
Psat1g144120 Pisum sativum HOM05D004945 ORTHO05D005536 3.4e-06 55.1 82 32.9
TPR.G7575 Trifolium pratense HOM05D004945 ORTHO05D005536 3.4e-06 55.1 82 34.1
BcaB03g12628 Brassica carinata HOM05D004945 ORTHO05D005536 4.4e-06 54.7 82 29.3
CiPaw.09G075900 Carya illinoinensis HOM05D004945 ORTHO05D005536 4.4e-06 54.7 82 29.3
Migut.I01191 Erythranthe guttata HOM05D004945 ORTHO05D005536 4.4e-06 54.7 85 29.4
Medtr2g037990 Medicago truncatula HOM05D004945 ORTHO05D005536 7.5e-06 53.9 82 32.9
Cc04_g00230 Coffea canephora HOM05D004945 ORTHO05D005536 9.8e-06 53.5 78 30.8
THA.LOC104814658 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 9.8e-06 53.5 82 31.7


User provided reference genes

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