Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c5_14310 Physcomitrium patens HOM05D001043 ORTHO05D006432 5.9e-255 883.6 427 100.0
SMO203G0209 Selaginella moellendorffii HOM05D001043 ORTHO05D006432 3.2e-107 392.9 430 47.9
Mapoly0014s0053 Marchantia polymorpha HOM05D001043 ORTHO05D006432 2.2e-100 370.2 423 46.1
arahy.Tifrunner.gnm1.ann1.AV1GYT Arachis hypogaea HOM05D001043 ORTHO05D006432 3.7e-100 369.4 448 42.9
ATR0743G191 Amborella trichopoda HOM05D001043 ORTHO05D006432 1.4e-99 367.5 436 45.2
arahy.Tifrunner.gnm1.ann1.41HRQM Arachis hypogaea HOM05D001043 ORTHO05D006432 7.1e-99 365.2 448 42.4
Peaxi162Scf00180g00029 Petunia axillaris HOM05D001043 ORTHO05D006432 2.1e-98 363.6 444 44.6
MD04G1044900 Malus domestica HOM05D001043 ORTHO05D006432 7.8e-98 361.7 444 44.8
Nitab4.5_0006064g0010 Nicotiana tabacum HOM05D001043 ORTHO05D006432 1.0e-97 361.3 444 44.1
Ciclev10020184m.g Citrus clementina HOM05D001043 ORTHO05D006432 1.7e-97 360.5 444 42.3
CAN.G136.20 Capsicum annuum HOM05D001043 ORTHO05D006432 5.1e-97 359.0 444 43.9
Lalb_Chr01g0003101 Lupinus albus HOM05D001043 ORTHO05D006432 6.6e-97 358.6 444 43.5
Cpa.g.sc9.315 Carica papaya HOM05D001043 ORTHO05D006432 1.1e-96 357.8 436 43.1
Medtr4g068130 Medicago truncatula HOM05D001043 ORTHO05D006432 1.9e-96 357.1 448 42.6
PGR142G3303 Punica granatum HOM05D001043 ORTHO05D006432 1.9e-96 357.1 448 43.3
PSO832G3319 Papaver somniferum HOM05D001043 ORTHO05D006432 2.5e-96 356.7 443 41.1
FAN12G0575 Fragaria x ananassa HOM05D001043 ORTHO05D006432 9.5e-96 354.8 445 43.4
Nitab4.5_0001586g0110 Nicotiana tabacum HOM05D001043 ORTHO05D006432 1.2e-95 354.4 444 44.1
FAN17G1903 Fragaria x ananassa HOM05D001043 ORTHO05D006432 2.8e-95 353.2 437 43.9
PSO210G3503 Papaver somniferum HOM05D001043 ORTHO05D006432 2.8e-95 353.2 443 40.9
Lj3g0012550 Lotus japonicus HOM05D001043 ORTHO05D006432 3.6e-95 352.8 449 42.5
CDE07G0303 Ceratophyllum demersum HOM05D001043 ORTHO05D006432 6.2e-95 352.1 440 42.0
Sopen06g018400 Solanum pennellii HOM05D001043 ORTHO05D006432 8.1e-95 351.7 444 43.2
Atru.chr4.1261 Acer truncatum HOM05D001043 ORTHO05D006432 1.8e-94 350.5 444 43.0
FvH4_4g10900 Fragaria vesca HOM05D001043 ORTHO05D006432 3.1e-94 349.7 445 43.1
PGSC0003DMG400016341 Solanum tuberosum HOM05D001043 ORTHO05D006432 5.2e-94 349.0 444 43.0
Thecc.04G175400 Theobroma cacao HOM05D001043 ORTHO05D006432 5.2e-94 349.0 442 41.2
SalBow3G3815 Salvia bowleyana HOM05D001043 ORTHO05D006432 1.2e-93 347.8 444 42.6
SGA_v2.0_scaffold12G06170 Striga asiatica HOM05D001043 ORTHO05D006432 1.2e-93 347.8 454 41.6
Cc03_g12190 Coffea canephora HOM05D001043 ORTHO05D006432 1.5e-93 347.4 445 42.9
CANSAT78G0880 Cannabis sativa HOM05D001043 ORTHO05D006432 2.0e-93 347.1 440 43.0
Hma1.2p1_2415F.1_g321710 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 2.0e-93 347.1 441 42.0
THA.LOC104800885 Tarenaya hassleriana HOM05D001043 ORTHO05D006432 2.0e-93 347.1 444 41.2
Sc19g0002850 Simmondsia chinensis HOM05D001043 ORTHO05D006432 2.6e-93 346.7 445 41.6
Solyc06g053340.3 Solanum lycopersicum HOM05D001043 ORTHO05D006432 3.4e-93 346.3 444 42.8
QL10p050774 Quercus lobata HOM05D001043 ORTHO05D006432 5.8e-93 345.5 442 41.2
RcHm_v2.0_Chr4g0406481 Rosa chinensis HOM05D001043 ORTHO05D006432 7.6e-93 345.1 444 42.1
Potri.017G027000 Populus trichocarpa HOM05D001043 ORTHO05D006432 1.3e-92 344.4 435 43.7
PGR142G0751 Punica granatum HOM05D001043 ORTHO05D006432 2.2e-92 343.6 448 42.4
TAR365G1116 Trochodendron aralioides HOM05D001043 ORTHO05D006432 3.8e-92 342.8 439 43.1
Duzib212G0937 Durio zibethinus HOM05D001043 ORTHO05D006432 4.9e-92 342.4 444 41.0
ECA240G3866 Erigeron canadensis HOM05D001043 ORTHO05D006432 4.9e-92 342.4 447 42.3
Lsat_1_v5_gn_3_125361 Lactuca sativa HOM05D001043 ORTHO05D006432 4.9e-92 342.4 433 43.0
Oeu022683.1 Olea europaea HOM05D001043 ORTHO05D006432 6.4e-92 342.0 444 41.7
TAR636G2727 Trochodendron aralioides HOM05D001043 ORTHO05D006432 6.4e-92 342.0 439 42.8
Hund12412 Selenicereus undatus HOM05D001043 ORTHO05D006432 1.1e-91 341.3 438 43.8
Manes.11G123700 Manihot esculenta HOM05D001043 ORTHO05D006432 1.4e-91 340.9 447 40.9
TPR.G34197 Trifolium pratense HOM05D001043 ORTHO05D006432 1.4e-91 340.9 454 41.4
C08p02400 Brassica napus HOM05D001043 ORTHO05D006432 2.4e-91 340.1 443 41.1
BolC8t47032H Brassica oleracea HOM05D001043 ORTHO05D006432 2.4e-91 340.1 443 41.1
Cfa015192 Carpinus fangiana HOM05D001043 ORTHO05D006432 3.2e-91 339.7 443 41.1
Glyma.12G051100 Glycine max HOM05D001043 ORTHO05D006432 5.4e-91 339.0 448 40.6
Sed0013039 Sechium edule HOM05D001043 ORTHO05D006432 5.4e-91 339.0 435 42.1
Actinidia27085 Actinidia chinensis HOM05D001043 ORTHO05D006432 7.1e-91 338.6 444 42.3
MBI07_g18520_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D006432 9.2e-91 338.2 441 43.3
Nn7g38145 Nelumbo nucifera HOM05D001043 ORTHO05D006432 9.2e-91 338.2 432 41.0
Ca_20798_v3 Cicer arietinum L. HOM05D001043 ORTHO05D006432 1.6e-90 337.4 450 41.8
Potri.007G130900 Populus trichocarpa HOM05D001043 ORTHO05D006432 2.1e-90 337.0 445 42.0
Duzib268G1183 Durio zibethinus HOM05D001043 ORTHO05D006432 3.5e-90 336.3 447 40.5
HanXRQChr03g0092911 Helianthus annuus HOM05D001043 ORTHO05D006432 4.6e-90 335.9 444 41.4
Aqoxy5G00006 Aquilegia oxysepala HOM05D001043 ORTHO05D006432 1.0e-89 334.7 440 42.7
VMungo1127G0978 Vigna mungo HOM05D001043 ORTHO05D006432 1.0e-89 334.7 448 40.2
Oeu027753.1 Olea europaea HOM05D001043 ORTHO05D006432 1.3e-89 334.3 444 40.8
A08p36110 Brassica napus HOM05D001043 ORTHO05D006432 1.7e-89 334.0 439 41.7
BraA08t35518Z Brassica rapa HOM05D001043 ORTHO05D006432 1.7e-89 334.0 439 41.7
CSS0043871 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 1.1e-88 331.3 444 40.8
Carub.0001s0544 Capsella rubella HOM05D001043 ORTHO05D006432 1.9e-88 330.5 445 40.4
Eucgr.H00342 Eucalyptus grandis HOM05D001043 ORTHO05D006432 4.3e-88 329.3 444 40.3
Ah.04g153480 Amaranthus hybridus HOM05D001043 ORTHO05D006432 9.6e-88 328.2 435 41.8
CARHR005620 Cardamine hirsuta HOM05D001043 ORTHO05D006432 9.6e-88 328.2 449 39.2
Thhalv10007687m.g Eutrema salsugineum HOM05D001043 ORTHO05D006432 1.3e-87 327.8 443 39.5
AT1G06110 Arabidopsis thaliana HOM05D001043 ORTHO05D006432 2.1e-87 327.0 450 39.6
Gorai.005G015800 Gossypium raimondii HOM05D001043 ORTHO05D006432 2.8e-87 326.6 436 40.6
AUR62002348 Chenopodium quinoa HOM05D001043 ORTHO05D006432 3.6e-87 326.2 440 42.5
Gohir.D02G012400 Gossypium hirsutum HOM05D001043 ORTHO05D006432 3.6e-87 326.2 436 40.6
Sp1g04910 Schrenkiella parvula HOM05D001043 ORTHO05D006432 4.8e-87 325.9 449 39.9
Gohir.A02G011600 Gossypium hirsutum HOM05D001043 ORTHO05D006432 1.1e-86 324.7 436 40.1
Haze_01462 Corylus avellana HOM05D001043 ORTHO05D006432 1.8e-86 323.9 475 38.9
AL1G16060 Arabidopsis lyrata HOM05D001043 ORTHO05D006432 4.0e-86 322.8 448 39.3
Dinv44154 Davidia involucrata HOM05D001043 ORTHO05D006432 9.0e-86 321.6 432 42.4
Sabra07G0106300 Salix brachista HOM05D001043 ORTHO05D006432 5.8e-85 318.9 489 37.6
SalBow3G1676 Salvia bowleyana HOM05D001043 ORTHO05D006432 2.2e-84 317.0 362 46.7
Glyma.11G126500 Glycine max HOM05D001043 ORTHO05D006432 3.8e-84 316.2 418 40.9
MSTRG.9754 Avicennia marina HOM05D001043 ORTHO05D006432 4.9e-84 315.8 433 39.5
EL10Ac3g06009 Beta vulgaris HOM05D001043 ORTHO05D006432 4.9e-84 315.8 439 41.5
Aa31LG1G7110 Aethionema arabicum HOM05D001043 ORTHO05D006432 1.9e-83 313.9 459 39.4
AUR62023842 Chenopodium quinoa HOM05D001043 ORTHO05D006432 3.2e-83 313.2 440 41.4
HPP92_004532 Vanilla planifolia HOM05D001043 ORTHO05D006432 3.2e-83 313.2 460 40.4
ClCG05G007210 Citrullus lanatus HOM05D001043 ORTHO05D006432 4.2e-83 312.8 443 40.0
Os11g0265200 Oryza sativa ssp. japonica HOM05D001043 ORTHO05D006432 2.7e-82 310.1 441 39.2
Lj3A0G11 Lonicera japonica HOM05D001043 ORTHO05D006432 2.3e-81 307.0 410 42.0
Dinv05076 Davidia involucrata HOM05D001043 ORTHO05D006432 3.0e-81 306.6 362 46.4
Rhsim02G0082300 Rhododendron simsii HOM05D001043 ORTHO05D006432 3.9e-81 306.2 430 40.5
MELO3C006795.2 Cucumis melo HOM05D001043 ORTHO05D006432 7.3e-80 302.0 443 38.6
HPP92_004523 Vanilla planifolia HOM05D001043 ORTHO05D006432 1.4e-78 297.7 455 39.6
Rhsim02G0082200 Rhododendron simsii HOM05D001043 ORTHO05D006432 5.3e-78 295.8 430 39.3
SHI29125 Sapria himalayana HOM05D001043 ORTHO05D006432 4.2e-75 286.2 436 36.7
CiPaw.01G096300 Carya illinoinensis HOM05D001043 ORTHO05D006432 7.1e-75 285.4 417 38.6
Prupe.1G197800 Prunus persica HOM05D001043 ORTHO05D006432 1.2e-74 284.6 383 41.8
CsaV3_3G015970 Cucumis sativus L. HOM05D001043 ORTHO05D006432 2.1e-74 283.9 400 39.5
CSS0016711 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 7.9e-74 282.0 365 42.7
GSVIVG01010840001 Vitis vinifera HOM05D001043 ORTHO05D006432 1.1e-72 278.1 440 36.6
SalBow3G2442 Salvia bowleyana HOM05D001043 ORTHO05D006432 4.3e-72 276.2 315 46.3
CBR_g726 Chara braunii HOM05D001043 ORTHO05D006432 5.6e-72 275.8 517 34.4
BcaC05g24309 Brassica carinata HOM05D001043 ORTHO05D006432 8.1e-71 271.9 439 35.8
C05p04390 Brassica napus HOM05D001043 ORTHO05D006432 8.1e-71 271.9 439 35.8
BolC5t29212H Brassica oleracea HOM05D001043 ORTHO05D006432 8.1e-71 271.9 439 35.8
Psat7g209600 Pisum sativum HOM05D001043 ORTHO05D006432 5.3e-70 269.2 382 39.8
GSVIVG01010839001 Vitis vinifera HOM05D001043 ORTHO05D006432 2.6e-69 266.9 434 36.4
Hma1.2p1_2415F.1_g321720 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 4.5e-69 266.2 392 38.3
Migut.G01345 Erythranthe guttata HOM05D001043 ORTHO05D006432 1.7e-68 264.2 381 38.3
Phvul.011G053400 Phaseolus vulgaris HOM05D001043 ORTHO05D006432 1.2e-66 258.1 385 37.7
MBI11_g10483_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D006432 1.1e-64 251.5 365 42.5
FAN07G1629 Fragaria x ananassa HOM05D001043 ORTHO05D006432 2.4e-62 243.8 440 35.0
BcaB02g06824 Brassica carinata HOM05D001043 ORTHO05D006432 3.1e-62 243.4 442 33.9
QL10p050755 Quercus lobata HOM05D001043 ORTHO05D006432 2.9e-60 236.9 234 49.6
Os11g0264700 Oryza sativa ssp. japonica HOM05D001043 ORTHO05D006432 8.4e-60 235.3 442 35.1
Zm00001eb168760 Zea mays HOM05D001043 ORTHO05D006432 3.5e-58 229.9 439 33.0
BraA10t42737Z Brassica rapa HOM05D001043 ORTHO05D006432 3.0e-57 226.9 434 33.9
Cre01.g005900 Chlamydomonas reinhardtii HOM05D001043 ORTHO05D006432 1.5e-56 224.6 485 31.8
Actinidia26504 Actinidia chinensis HOM05D001043 ORTHO05D006432 2.5e-56 223.8 399 34.3
DCAR_028429 Daucus carota HOM05D001043 ORTHO05D006432 2.4e-54 217.2 309 39.8
HanXRQChr09g0262091 Helianthus annuus HOM05D001043 ORTHO05D006432 1.4e-51 208.0 307 39.4
A10p04730 Brassica napus HOM05D001043 ORTHO05D006432 4.6e-50 203.0 306 38.2
CiPaw.02G052200 Carya illinoinensis HOM05D001043 ORTHO05D006432 6.3e-47 192.6 184 50.5
Ciclev10023406m.g Citrus clementina HOM05D001043 ORTHO05D006432 2.4e-46 190.7 347 34.9
CDE04G0865 Ceratophyllum demersum HOM05D001043 ORTHO05D006432 5.0e-44 183.0 181 50.8
COL.COLO4_10086 Corchorus olitorius HOM05D001043 ORTHO05D006432 5.1e-41 172.9 183 49.2
PRCOL_00003688 Prasinoderma coloniale HOM05D001043 ORTHO05D006432 1.2e-37 161.8 488 29.3
Rhsim02G0082000 Rhododendron simsii HOM05D000432 ORTHO05D000320 3.6e-34 150.2 300 31.0
SEGI_03011 Sequoiadendron giganteum HOM05D001043 ORTHO05D006432 3.6e-34 150.2 158 46.2
Lj3A33G10 Lonicera japonica HOM05D001043 ORTHO05D006432 6.1e-34 149.4 145 53.1
Lj3A33G11 Lonicera japonica HOM05D001043 ORTHO05D006432 6.1e-34 149.4 235 36.2
Hma1.2p1_1466F.1_g285390 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 5.7e-32 142.9 225 36.9
HanXRQChr09g0262081 Helianthus annuus HOM05D001043 ORTHO05D006432 7.7e-21 105.9 86 51.2
MCO09G831 Micromonas commoda HOM05D001043 ORTHO05D006432 1.7e-15 88.2 375 26.7
HanXRQChr09g0250561 Helianthus annuus HOM05D001043 ORTHO05D006432 1.4e-14 85.1 127 38.6
PGR142G2310 Punica granatum HOM05D001043 ORTHO05D006432 2.7e-13 80.9 69 55.1
DCAR_028430 Daucus carota HOM05D001043 ORTHO05D006432 1.4e-09 68.6 72 48.6
HanXRQChr12g0370191 Helianthus annuus HOM05D001043 ORTHO05D006432 9.8e-08 62.4 65 43.1


User provided reference genes

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