Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c5_13122 Physcomitrium patens HOM05D021600 ORTHO05D307975 1.4e-248 862.4 424 100.0
Pp3c5_13120 Physcomitrium patens HOM05D021600 ORTHO05D310258 1.1e-242 842.8 414 99.8
Pp3c9_19230 Physcomitrium patens HOM05D021600 ORTHO05D015161 2.3e-86 323.6 422 45.5
Pp3c26_3410 Physcomitrium patens HOM05D021600 ORTHO05D009385 5.8e-85 318.9 412 44.7
Pp3c16_17760 Physcomitrium patens HOM05D021600 ORTHO05D009361 4.8e-23 113.2 208 39.9
Pp3c7_16740 Physcomitrium patens HOM05D028496 ORTHO05D310843 1.1e-19 102.1 358 27.1
Pp3c5_26310 Physcomitrium patens HOM05D002809 ORTHO05D009385 3.2e-19 100.5 288 30.2
Pp3c2_150 Physcomitrium patens HOM05D028496 ORTHO05D308425 2.3e-17 94.4 427 26.2
Pp3s145_40 Physcomitrium patens HOM05D028496 ORTHO05D314083 2.3e-17 94.4 427 26.2
Pp3c11_10460 Physcomitrium patens HOM05D028496 ORTHO05D030467 8.8e-17 92.4 379 24.3
Pp3c7_15830 Physcomitrium patens HOM05D021600 ORTHO05D030467 1.8e-14 84.7 258 26.0
Mapoly0001s0123 Marchantia polymorpha HOM05D004302 ORTHO05D007631 5.0e-12 76.6 265 27.5
Pp3c26_4850 Physcomitrium patens HOM05D002809 ORTHO05D316175 5.0e-12 76.6 385 23.6
AagrBONN_evm.TU.Sc2ySwM_228.846 Anthoceros agrestis HOM05D002809 ORTHO05D004939 1.5e-11 75.1 269 24.2
Pp3c14_23730 Physcomitrium patens HOM05D002809 ORTHO05D004563 1.6e-10 71.6 200 29.5
TAR381G0769 Trochodendron aralioides HOM05D003005 ORTHO05D004939 1.6e-10 71.6 278 24.8
SEGI_38976 Sequoiadendron giganteum HOM05D002809 ORTHO05D004939 3.6e-10 70.5 288 24.3
FAN06G3469 Fragaria x ananassa HOM05D000007 ORTHO05D005026 4.7e-10 70.1 269 25.7
ATR0763G218 Amborella trichopoda HOM05D005977 ORTHO05D007546 6.1e-10 69.7 387 24.3
FAN06G4337 Fragaria x ananassa HOM05D000007 ORTHO05D005026 6.1e-10 69.7 269 25.7
Nn5g28167 Nelumbo nucifera HOM05D002809 ORTHO05D004939 8.0e-10 69.3 274 25.9
FAN03G0293 Fragaria x ananassa HOM05D000007 ORTHO05D005026 1.0e-09 68.9 268 24.3
Lj1P669T8 Lonicera japonica HOM05D000007 ORTHO05D000039 1.4e-09 68.6 210 27.1
Mapoly0170s0023 Marchantia polymorpha HOM05D002809 ORTHO05D004563 1.4e-09 68.6 330 23.6
Pp3c24_18510 Physcomitrium patens HOM05D002809 ORTHO05D004939 1.4e-09 68.6 411 22.6
Lj1P667T11 Lonicera japonica HOM05D000007 ORTHO05D000039 2.3e-09 67.8 216 27.8
Lj1P672T29 Lonicera japonica HOM05D000007 ORTHO05D000039 2.3e-09 67.8 216 27.8
Mapoly0101s0058 Marchantia polymorpha HOM05D002809 ORTHO05D004939 3.0e-09 67.4 256 24.6
AagrBONN_evm.TU.Sc2ySwM_368.489 Anthoceros agrestis HOM05D005500 ORTHO05D006906 3.9e-09 67.0 266 26.7
Pp3c14_9030 Physcomitrium patens HOM05D002809 ORTHO05D009385 3.9e-09 67.0 277 25.3
FAN10G0833 Fragaria x ananassa HOM05D000007 ORTHO05D005026 8.8e-09 65.9 275 25.1
Pp3c26_8170 Physcomitrium patens HOM05D004302 ORTHO05D026051 1.1e-08 65.5 258 27.1
SMO367G1056 Selaginella moellendorffii HOM05D002809 ORTHO05D030467 1.1e-08 65.5 384 21.4
Mapoly0033s0124 Marchantia polymorpha HOM05D004302 ORTHO05D004939 1.5e-08 65.1 277 24.5
AagrBONN_evm.TU.Sc2ySwM_228.5143 Anthoceros agrestis HOM05D003005 ORTHO05D011366 2.0e-08 64.7 281 24.6
FAN03G0960 Fragaria x ananassa HOM05D000007 ORTHO05D005026 2.0e-08 64.7 278 26.6
SEGI_07480 Sequoiadendron giganteum HOM05D005977 ORTHO05D004563 2.6e-08 64.3 413 23.5
Sc26g0000790 Simmondsia chinensis HOM05D003005 ORTHO05D004170 2.6e-08 64.3 202 28.2
Mapoly0125s0029 Marchantia polymorpha HOM05D002809 ORTHO05D009091 4.4e-08 63.5 262 23.7
Thhalv10011962m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 5.7e-08 63.2 227 22.9
Lj3g0003098 Lotus japonicus HOM05D003005 ORTHO05D004170 5.7e-08 63.2 213 27.7
Pp3c11_18710 Physcomitrium patens HOM05D004302 ORTHO05D004939 5.7e-08 63.2 279 24.7
SMO361G0323 Selaginella moellendorffii HOM05D002809 ORTHO05D004939 5.7e-08 63.2 284 23.6
AagrBONN_evm.TU.Sc2ySwM_228.1930 Anthoceros agrestis HOM05D004302 ORTHO05D004939 7.4e-08 62.8 319 25.4
MD01G1073800 Malus domestica HOM05D003005 ORTHO05D004170 7.4e-08 62.8 234 25.2
Dinv15480 Davidia involucrata HOM05D000007 ORTHO05D000039 1.3e-07 62.0 264 24.2
Lsat_1_v5_gn_4_34441 Lactuca sativa HOM05D003005 ORTHO05D004170 1.3e-07 62.0 238 24.8
MBI07_g06328_MAGBIO Magnolia biondii HOM05D003005 ORTHO05D004170 1.3e-07 62.0 234 25.6
AT3G61590 Arabidopsis thaliana HOM05D003005 ORTHO05D004170 1.7e-07 61.6 246 26.4
SMO116G0409 Selaginella moellendorffii HOM05D002809 ORTHO05D004563 2.2e-07 61.2 256 24.6
ECA233G3336 Erigeron canadensis HOM05D000007 ORTHO05D000039 2.8e-07 60.8 233 26.2
Psat4g213360 Pisum sativum HOM05D003005 ORTHO05D004170 2.8e-07 60.8 231 26.8
Dinv04466 Davidia involucrata HOM05D000007 ORTHO05D000039 3.7e-07 60.5 234 26.5
Ciclev10003618m.g Citrus clementina HOM05D000007 ORTHO05D000039 8.2e-07 59.3 266 26.3
MD07G1142500 Malus domestica HOM05D003005 ORTHO05D004170 8.2e-07 59.3 234 26.1
Mapoly1710s0002 Marchantia polymorpha HOM05D005561 ORTHO05D006834 8.2e-07 59.3 279 22.2
Nn5g30581 Nelumbo nucifera HOM05D007423 ORTHO05D009091 8.2e-07 59.3 305 20.3
Pp3c3_5460 Physcomitrium patens HOM05D002809 ORTHO05D004563 8.2e-07 59.3 269 23.4
ATR0681G217 Amborella trichopoda HOM05D015801 ORTHO05D011070 1.1e-06 58.9 210 29.0
AagrBONN_evm.TU.Sc2ySwM_362.1782 Anthoceros agrestis HOM05D002809 ORTHO05D009361 1.1e-06 58.9 50 56.0
AUR62010298 Chenopodium quinoa HOM05D000007 ORTHO05D000017 1.1e-06 58.9 120 35.0
Mapoly0063s0081 Marchantia polymorpha HOM05D002809 ORTHO05D004563 1.1e-06 58.9 211 26.1
unitig_37.g12047 Utricularia gibba HOM05D005977 ORTHO05D007546 1.1e-06 58.9 289 24.9
AagrBONN_evm.TU.Sc2ySwM_228.4627 Anthoceros agrestis HOM05D003005 ORTHO05D006906 1.4e-06 58.5 280 24.3
CsaV3_3G008300 Cucumis sativus L. HOM05D003005 ORTHO05D004170 1.4e-06 58.5 238 26.1
Gohir.A06G170908 Gossypium hirsutum HOM05D000007 ORTHO05D000039 1.4e-06 58.5 211 28.0
Nn7g37341 Nelumbo nucifera HOM05D003005 ORTHO05D004170 1.4e-06 58.5 230 27.0
Ciclev10003993m.g Citrus clementina HOM05D000007 ORTHO05D000039 1.8e-06 58.2 261 24.9
Cc02_g38810 Coffea canephora HOM05D003005 ORTHO05D004170 1.8e-06 58.2 235 25.5
Migut.N00935 Erythranthe guttata HOM05D000007 ORTHO05D000039 1.8e-06 58.2 268 24.6
FvH4_7g28041 Fragaria vesca HOM05D000007 ORTHO05D005026 1.8e-06 58.2 71 40.8
Prupe.2G181900 Prunus persica HOM05D003005 ORTHO05D004170 1.8e-06 58.2 234 25.2
Sed0008353 Sechium edule HOM05D003005 ORTHO05D004170 1.8e-06 58.2 238 26.9
VMungo0331G0185 Vigna mungo HOM05D003005 ORTHO05D004170 1.8e-06 58.2 214 26.6
Aqoxy3G03706 Aquilegia oxysepala HOM05D015266 ORTHO05D007631 2.4e-06 57.8 207 26.6
CDE06G1895 Ceratophyllum demersum HOM05D004302 ORTHO05D007546 2.4e-06 57.8 272 22.4
Migut.E01126 Erythranthe guttata HOM05D000007 ORTHO05D000039 2.4e-06 57.8 264 24.2
Lj1P592T23 Lonicera japonica HOM05D000007 ORTHO05D000039 2.4e-06 57.8 217 24.4
BcaB02g07368 Brassica carinata HOM05D003005 ORTHO05D004170 3.1e-06 57.4 238 26.1
CARHR171900 Cardamine hirsuta HOM05D003005 ORTHO05D004170 3.1e-06 57.4 238 26.9
MELO3C006049.2 Cucumis melo HOM05D003005 ORTHO05D004170 3.1e-06 57.4 238 25.6
Gorai.010G208700 Gossypium raimondii HOM05D000007 ORTHO05D000039 3.1e-06 57.4 209 28.2
Peaxi162Scf01367g00003 Petunia axillaris HOM05D003005 ORTHO05D004170 3.1e-06 57.4 235 26.0
Phvul.010G107700 Phaseolus vulgaris HOM05D003005 ORTHO05D004170 3.1e-06 57.4 247 25.9
Pp3c9_20230 Physcomitrium patens HOM05D004302 ORTHO05D009385 3.1e-06 57.4 373 24.7
SGA_v2.0_scaffold22G09921 Striga asiatica HOM05D006415 ORTHO05D008549 3.1e-06 57.4 213 25.4
unitig_747.g21324 Utricularia gibba HOM05D003005 ORTHO05D004170 3.1e-06 57.4 237 24.5
vmacro09289 Vaccinium macrocarpon HOM05D000007 ORTHO05D000039 3.1e-06 57.4 262 24.8
GSVIVG01012147001 Vitis vinifera HOM05D005977 ORTHO05D007546 3.1e-06 57.4 385 22.6
AagrBONN_evm.TU.Sc2ySwM_117.2107 Anthoceros agrestis HOM05D005500 ORTHO05D006906 4.1e-06 57.0 301 23.6
Aqoxy7G00225 Aquilegia oxysepala HOM05D003005 ORTHO05D004170 4.1e-06 57.0 235 25.5
CiPaw.10G123100 Carya illinoinensis HOM05D000007 ORTHO05D000521 4.1e-06 57.0 212 24.5
ClCG05G000990 Citrullus lanatus HOM05D003005 ORTHO05D004170 4.1e-06 57.0 234 25.2
HanXRQChr02g0054011 Helianthus annuus HOM05D002420 ORTHO05D002422 4.1e-06 57.0 227 26.4
Mapoly0012s0051 Marchantia polymorpha HOM05D018443 ORTHO05D015161 4.1e-06 57.0 229 26.6
Mapoly0270s0001 Marchantia polymorpha HOM05D035083 ORTHO05D036668 4.1e-06 57.0 273 22.0
Pp3c7_9930 Physcomitrium patens HOM05D002809 ORTHO05D004939 4.1e-06 57.0 279 24.7
SEGI_09375 Sequoiadendron giganteum HOM05D003005 ORTHO05D004170 4.1e-06 57.0 206 24.8
HPP92_004575 Vanilla planifolia HOM05D003005 ORTHO05D004170 4.1e-06 57.0 231 26.4
CSS0028061 Camellia sinensis var. sinensis HOM05D003005 ORTHO05D004170 5.3e-06 56.6 209 25.4
CSS0046188 Camellia sinensis var. sinensis HOM05D003005 ORTHO05D004170 5.3e-06 56.6 209 25.4
Migut.M00112 Erythranthe guttata HOM05D000007 ORTHO05D000039 5.3e-06 56.6 203 28.1
Thhalv10012205m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 5.3e-06 56.6 278 23.7
Aqoxy7G00937 Aquilegia oxysepala HOM05D006415 ORTHO05D008549 7.0e-06 56.2 229 24.9
Cpa.g.sc82.23 Carica papaya HOM05D006415 ORTHO05D008549 7.0e-06 56.2 206 26.2
CiPaw.01G070300 Carya illinoinensis HOM05D003005 ORTHO05D004170 7.0e-06 56.2 232 22.8
FvH4_7g28012 Fragaria vesca HOM05D000007 ORTHO05D005026 7.0e-06 56.2 71 39.4
FvH4_7g28013 Fragaria vesca HOM05D000007 ORTHO05D005026 7.0e-06 56.2 71 39.4
FvH4_7g28031 Fragaria vesca HOM05D000007 ORTHO05D005026 7.0e-06 56.2 71 39.4
Pp3c13_8900 Physcomitrium patens HOM05D031927 ORTHO05D026051 7.0e-06 56.2 292 21.6
GSVIVG01027030001 Vitis vinifera HOM05D003005 ORTHO05D004170 7.0e-06 56.2 235 24.7
Zm00001eb237930 Zea mays HOM05D003005 ORTHO05D004170 7.0e-06 56.2 231 25.1
AagrBONN_evm.TU.Sc2ySwM_344.5233 Anthoceros agrestis HOM05D008059 ORTHO05D009361 9.1e-06 55.8 50 48.0
BcaC08g45140 Brassica carinata HOM05D003005 ORTHO05D004170 9.1e-06 55.8 206 26.7
C06p27590 Brassica napus HOM05D003005 ORTHO05D004170 9.1e-06 55.8 206 26.7
BolC6t37928H Brassica oleracea HOM05D003005 ORTHO05D004170 9.1e-06 55.8 206 26.7
COL.COLO4_06357 Corchorus olitorius HOM05D003005 ORTHO05D004170 9.1e-06 55.8 234 24.8
ECA238G0292 Erigeron canadensis HOM05D000007 ORTHO05D000017 9.1e-06 55.8 343 21.6
Medtr8g028250 Medicago truncatula HOM05D003005 ORTHO05D004170 9.1e-06 55.8 254 25.2
Nn1g01765 Nelumbo nucifera HOM05D003005 ORTHO05D004170 9.1e-06 55.8 230 26.5


User provided reference genes

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