Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c5_12280 Physcomitrium patens HOM05D003493 ORTHO05D003980 0.0e+00 1825.8 941 100.0
Pp3c6_14220 Physcomitrium patens HOM05D003493 ORTHO05D003980 5.9e-239 831.6 769 60.3
Pp3c1_25660 Physcomitrium patens HOM05D003493 ORTHO05D003980 1.7e-161 574.3 952 41.7
Pp3c14_11980 Physcomitrium patens HOM05D003493 ORTHO05D003980 8.4e-145 518.8 966 37.9
Pp3c17_10430 Physcomitrium patens HOM05D003493 ORTHO05D003980 1.1e-131 475.3 862 37.4
Mapoly0036s0110 Marchantia polymorpha HOM05D003493 ORTHO05D003980 5.4e-91 340.1 961 29.6
AagrBONN_evm.TU.Sc2ySwM_368.2475 Anthoceros agrestis HOM05D003493 ORTHO05D003980 7.2e-88 329.7 825 31.6
Prupe.5G246400 Prunus persica HOM05D003493 ORTHO05D003980 5.8e-69 266.9 679 28.9
Sabra17G0126700 Salix brachista HOM05D003493 ORTHO05D003980 1.4e-67 262.3 749 29.0
SMO361G0167 Selaginella moellendorffii HOM05D003493 ORTHO05D003980 1.9e-67 261.9 747 28.9
Potri.017G155000 Populus trichocarpa HOM05D003493 ORTHO05D003980 4.1e-67 260.8 701 29.8
Sc12g0007780 Simmondsia chinensis HOM05D003493 ORTHO05D003980 4.1e-67 260.8 740 28.2
CSS0005530 Camellia sinensis var. sinensis HOM05D003493 ORTHO05D003980 7.8e-66 256.5 687 28.8
AL2G32970 Arabidopsis lyrata HOM05D003493 ORTHO05D003980 1.7e-65 255.4 712 28.4
Phvul.004G135600 Phaseolus vulgaris HOM05D003493 ORTHO05D003980 1.7e-65 255.4 691 28.5
Atru.chr9.57 Acer truncatum HOM05D003493 ORTHO05D003980 6.6e-65 253.4 713 27.8
A02p18540 Brassica napus HOM05D003493 ORTHO05D003980 8.6e-65 253.1 674 29.2
BraA02t06893Z Brassica rapa HOM05D003493 ORTHO05D003980 1.5e-64 252.3 699 29.2
TAR622G0755 Trochodendron aralioides HOM05D003493 ORTHO05D003980 1.5e-64 252.3 719 27.0
Glyma.09G160200 Glycine max HOM05D003493 ORTHO05D003980 2.5e-64 251.5 678 29.2
SalBow5G1620 Salvia bowleyana HOM05D003493 ORTHO05D003980 2.5e-64 251.5 689 28.6
Thecc.06G006900 Theobroma cacao HOM05D003493 ORTHO05D003980 5.6e-64 250.4 769 27.7
Gorai.009G116400 Gossypium raimondii HOM05D003493 ORTHO05D003980 9.5e-64 249.6 699 28.0
Gohir.A05G111700 Gossypium hirsutum HOM05D003493 ORTHO05D003980 1.2e-63 249.2 665 28.6
Gohir.A06G181400 Gossypium hirsutum HOM05D003493 ORTHO05D003980 1.2e-63 249.2 672 27.8
Hma1.2p1_0807F.1_g221460 Hydrangea macrophylla HOM05D003493 ORTHO05D003980 2.1e-63 248.4 760 27.8
Sp5g28170 Schrenkiella parvula HOM05D003493 ORTHO05D003980 4.7e-63 247.3 783 26.8
C02p30730 Brassica napus HOM05D003493 ORTHO05D003980 6.2e-63 246.9 763 27.5
Gohir.D05G112200 Gossypium hirsutum HOM05D003493 ORTHO05D003980 8.1e-63 246.5 699 27.9
AT1G73200 Arabidopsis thaliana HOM05D003493 ORTHO05D003980 3.1e-62 244.6 783 27.3
Carub.0002s1999 Capsella rubella HOM05D003493 ORTHO05D003980 3.1e-62 244.6 782 27.5
Zm00001eb190790 Zea mays HOM05D003493 ORTHO05D003980 3.1e-62 244.6 764 27.0
AUR62041605 Chenopodium quinoa HOM05D003493 ORTHO05D003980 4.0e-62 244.2 695 28.9
Actinidia06838 Actinidia chinensis HOM05D003493 ORTHO05D003980 5.2e-62 243.8 795 26.9
Migut.O00291 Erythranthe guttata HOM05D003493 ORTHO05D003980 5.2e-62 243.8 766 27.2
FvH4_5g18670 Fragaria vesca HOM05D003493 ORTHO05D003980 6.8e-62 243.4 774 27.9
Glyma.16G209600 Glycine max HOM05D003493 ORTHO05D003980 6.8e-62 243.4 933 26.3
Lj5A169T97 Lonicera japonica HOM05D003493 ORTHO05D003980 6.8e-62 243.4 621 28.5
BolC2t09128H Brassica oleracea HOM05D003493 ORTHO05D003980 1.2e-61 242.7 705 27.7
Carub.0001s1755 Capsella rubella HOM05D003493 ORTHO05D003980 1.2e-61 242.7 943 26.8
FAN18G2761 Fragaria x ananassa HOM05D003493 ORTHO05D003980 1.2e-61 242.7 773 27.7
FAN08G2984 Fragaria x ananassa HOM05D003493 ORTHO05D003980 2.6e-61 241.5 750 28.5
RcHm_v2.0_Chr7g0176841 Rosa chinensis HOM05D003493 ORTHO05D003980 3.4e-61 241.1 769 26.5
VMungo0464G0665 Vigna mungo HOM05D003493 ORTHO05D003980 5.8e-61 240.4 680 27.5
CANSAT80G2441 Cannabis sativa HOM05D003493 ORTHO05D003980 9.9e-61 239.6 763 27.0
Gohir.D06G188200 Gossypium hirsutum HOM05D003493 ORTHO05D003980 9.9e-61 239.6 674 27.6
Gorai.010G220600 Gossypium raimondii HOM05D003493 ORTHO05D003980 9.9e-61 239.6 674 27.6
PSO782G2561 Papaver somniferum HOM05D003493 ORTHO05D003980 9.9e-61 239.6 744 26.5
PSO063G3260 Papaver somniferum HOM05D003493 ORTHO05D003980 1.3e-60 239.2 749 26.4
HanXRQChr15g0492171 Helianthus annuus HOM05D003493 ORTHO05D003980 2.9e-60 238.0 704 28.4
MSTRG.23219 Avicennia marina HOM05D003493 ORTHO05D003980 3.7e-60 237.7 701 28.1
MD14G1000100 Malus domestica HOM05D003493 ORTHO05D003980 3.7e-60 237.7 687 27.2
CARHR066210 Cardamine hirsuta HOM05D003493 ORTHO05D003980 1.1e-59 236.1 802 28.3
HanXRQChr08g0220881 Helianthus annuus HOM05D003493 ORTHO05D003980 1.1e-59 236.1 668 28.1
MBI06_g37980_MAGBIO Magnolia biondii HOM05D003493 ORTHO05D003980 1.1e-59 236.1 924 25.5
Lj9A410T67 Lonicera japonica HOM05D003493 ORTHO05D003980 2.4e-59 235.0 772 26.2
Lalb_Chr21g0311711 Lupinus albus HOM05D003493 ORTHO05D003980 2.4e-59 235.0 773 26.0
Manes.02G118200 Manihot esculenta HOM05D003493 ORTHO05D003980 2.4e-59 235.0 688 27.6
ATR0124G004 Amborella trichopoda HOM05D003493 ORTHO05D003980 4.1e-59 234.2 787 26.4
Lalb_Chr14g0370061 Lupinus albus HOM05D003493 ORTHO05D003980 5.4e-59 233.8 681 28.5
Sopen03g029860 Solanum pennellii HOM05D003493 ORTHO05D003980 9.2e-59 233.0 848 25.9
FAN04G2252 Fragaria x ananassa HOM05D003493 ORTHO05D003980 1.2e-58 232.6 924 25.8
Lsat_1_v5_gn_0_10721 Lactuca sativa HOM05D003493 ORTHO05D003980 1.2e-58 232.6 679 28.6
Thhalv10018153m.g Eutrema salsugineum HOM05D003493 ORTHO05D003980 2.1e-58 231.9 773 25.9
AL1G30180 Arabidopsis lyrata HOM05D003493 ORTHO05D003980 4.6e-58 230.7 959 26.6
Nitab4.5_0000477g0020 Nicotiana tabacum HOM05D003493 ORTHO05D003980 7.8e-58 229.9 840 25.7
Aqoxy3G04358 Aquilegia oxysepala HOM05D003493 ORTHO05D003980 1.3e-57 229.2 801 25.8
CAN.G65.58 Capsicum annuum HOM05D003493 ORTHO05D003980 1.3e-57 229.2 702 26.6
Sp1g15900 Schrenkiella parvula HOM05D003493 ORTHO05D003980 1.7e-57 228.8 939 25.3
Aa31LG4G3480 Aethionema arabicum HOM05D003493 ORTHO05D003980 2.3e-57 228.4 781 27.3
Duzib192G0928 Durio zibethinus HOM05D003493 ORTHO05D003980 2.3e-57 228.4 921 25.6
PGR083G2526 Punica granatum HOM05D003493 ORTHO05D003980 3.0e-57 228.0 706 25.4
GSVIVG01024229001 Vitis vinifera HOM05D003493 ORTHO05D003980 3.0e-57 228.0 768 26.0
Psat1g117720 Pisum sativum HOM05D003493 ORTHO05D003980 6.6e-57 226.9 698 27.5
Solyc03g019770.4 Solanum lycopersicum HOM05D003493 ORTHO05D003980 8.6e-57 226.5 734 28.1
TWI36G1567 Tripterygium wilfordii HOM05D003493 ORTHO05D003980 8.6e-57 226.5 721 26.1
Haze_18391 Corylus avellana HOM05D003493 ORTHO05D003980 1.5e-56 225.7 742 27.0
Duzib235G1490 Durio zibethinus HOM05D003493 ORTHO05D003980 1.5e-56 225.7 916 25.5
Nitab4.5_0000854g0120 Nicotiana tabacum HOM05D003493 ORTHO05D003980 2.5e-56 224.9 833 25.9
Aa31LG7G2640 Aethionema arabicum HOM05D003493 ORTHO05D003980 3.3e-56 224.6 878 26.0
TWI81G0199 Tripterygium wilfordii HOM05D003493 ORTHO05D003980 7.3e-56 223.4 794 25.6
ClCG01G014650 Citrullus lanatus HOM05D003493 ORTHO05D003980 9.6e-56 223.0 774 25.1
Medtr6g066300 Medicago truncatula HOM05D003493 ORTHO05D003980 1.2e-55 222.6 607 29.5
C06p47340 Brassica napus HOM05D003493 ORTHO05D003980 3.6e-55 221.1 763 25.2
Thhalv10006829m.g Eutrema salsugineum HOM05D003493 ORTHO05D003980 3.6e-55 221.1 939 25.3
CsaV3_1G007680 Cucumis sativus L. HOM05D003493 ORTHO05D003980 4.7e-55 220.7 794 25.4
Eucgr.H00671 Eucalyptus grandis HOM05D003493 ORTHO05D003980 4.7e-55 220.7 936 24.9
BraA07t31464Z Brassica rapa HOM05D003493 ORTHO05D003980 6.2e-55 220.3 781 26.1
Glyma.10G174700 Glycine max HOM05D003493 ORTHO05D003980 6.2e-55 220.3 843 26.9
Lj2g0009881 Lotus japonicus HOM05D003493 ORTHO05D003980 6.2e-55 220.3 754 28.0
Lalb_Chr06g0168711 Lupinus albus HOM05D003493 ORTHO05D003980 6.2e-55 220.3 938 26.1
CiPaw.16G076700 Carya illinoinensis HOM05D003493 ORTHO05D003980 1.1e-54 219.5 663 26.8
Sed0011518 Sechium edule HOM05D003493 ORTHO05D003980 1.4e-54 219.2 917 24.8
Cfa017818 Carpinus fangiana HOM05D003493 ORTHO05D003980 1.8e-54 218.8 938 25.3
ECA232G4824 Erigeron canadensis HOM05D003493 ORTHO05D003980 1.8e-54 218.8 760 26.6
THA.LOC104812198 Tarenaya hassleriana HOM05D003493 ORTHO05D003980 1.8e-54 218.8 808 27.2
TPR.G8860 Trifolium pratense HOM05D003493 ORTHO05D003980 1.8e-54 218.8 953 26.2
A07p39150 Brassica napus HOM05D003493 ORTHO05D003980 2.4e-54 218.4 762 26.1
BolC6t39773H Brassica oleracea HOM05D003493 ORTHO05D003980 2.4e-54 218.4 771 25.8
Dinv11742 Davidia involucrata HOM05D003493 ORTHO05D003980 4.0e-54 217.6 819 27.4
BcaC07g41354 Brassica carinata HOM05D003493 ORTHO05D003980 6.8e-54 216.9 932 25.6
MELO3C002186.2 Cucumis melo HOM05D003493 ORTHO05D003980 6.8e-54 216.9 782 25.2
CARHR018430 Cardamine hirsuta HOM05D003493 ORTHO05D003980 8.9e-54 216.5 941 25.1
BraA06t24529Z Brassica rapa HOM05D003493 ORTHO05D003980 1.2e-53 216.1 937 25.0
Peaxi162Scf00643g00431 Petunia axillaris HOM05D003493 ORTHO05D003980 1.2e-53 216.1 841 26.5
VMungo0720G0805 Vigna mungo HOM05D003493 ORTHO05D003980 1.2e-53 216.1 747 26.5
Zm00001eb228970 Zea mays HOM05D003493 ORTHO05D003980 1.2e-53 216.1 672 27.2
Manes.01G159600 Manihot esculenta HOM05D003493 ORTHO05D003980 1.5e-53 215.7 703 27.0
QL10p035454 Quercus lobata HOM05D003493 ORTHO05D003980 1.5e-53 215.7 637 28.1
A06p13880 Brassica napus HOM05D003493 ORTHO05D003980 2.6e-53 214.9 936 25.1
AT1G17820 Arabidopsis thaliana HOM05D003493 ORTHO05D003980 3.4e-53 214.5 945 25.9
Psat6g054360 Pisum sativum HOM05D003493 ORTHO05D003980 4.4e-53 214.2 684 28.2
C08p43630 Brassica napus HOM05D003493 ORTHO05D003980 5.8e-53 213.8 928 25.5
BolC8t51909H Brassica oleracea HOM05D003493 ORTHO05D003980 5.8e-53 213.8 928 25.5
QL10p036794 Quercus lobata HOM05D003493 ORTHO05D003980 5.8e-53 213.8 637 27.9
Nitab4.5_0004170g0020 Nicotiana tabacum HOM05D003493 ORTHO05D003980 7.6e-53 213.4 730 27.7
PGSC0003DMG400015207 Solanum tuberosum HOM05D003493 ORTHO05D003980 1.7e-52 212.2 808 26.9
Nn3g18516 Nelumbo nucifera HOM05D003493 ORTHO05D003980 2.2e-52 211.8 526 29.5
A09p60190 Brassica napus HOM05D003493 ORTHO05D003980 8.4e-52 209.9 928 25.4
Cc04_g13620 Coffea canephora HOM05D003493 ORTHO05D003980 1.1e-51 209.5 657 27.9
C05p16200 Brassica napus HOM05D003493 ORTHO05D003980 3.2e-51 208.0 930 24.4
BraA09t41388Z Brassica rapa HOM05D003493 ORTHO05D003980 4.2e-51 207.6 928 25.2
Sopen06g028400 Solanum pennellii HOM05D003493 ORTHO05D003980 5.4e-51 207.2 934 24.5
arahy.Tifrunner.gnm1.ann1.W0PAIX Arachis hypogaea HOM05D003493 ORTHO05D003980 9.3e-51 206.5 766 25.6
arahy.Tifrunner.gnm1.ann1.ZVJ3VC Arachis hypogaea HOM05D003493 ORTHO05D003980 9.3e-51 206.5 760 24.6
Solyc06g072110.4 Solanum lycopersicum HOM05D003493 ORTHO05D003980 1.2e-50 206.1 925 24.8
Ca_09923_v3 Cicer arietinum L. HOM05D003493 ORTHO05D003980 3.5e-50 204.5 578 28.2
TPR.G8876 Trifolium pratense HOM05D003493 ORTHO05D003980 3.5e-50 204.5 702 26.8
Lj5g0000329 Lotus japonicus HOM05D003493 ORTHO05D003980 4.6e-50 204.1 941 24.5
BolC5t30322H Brassica oleracea HOM05D003493 ORTHO05D003980 6.0e-50 203.8 935 24.7
SGA_v2.0_scaffold25G10715 Striga asiatica HOM05D003493 ORTHO05D003980 6.0e-50 203.8 712 25.7
BcaB07g34006 Brassica carinata HOM05D003493 ORTHO05D003980 7.8e-50 203.4 840 24.9
CAN.G861.8 Capsicum annuum HOM05D003493 ORTHO05D003980 7.8e-50 203.4 701 26.7
Peaxi162Scf01390g00035 Petunia axillaris HOM05D003493 ORTHO05D003980 1.7e-49 202.2 945 26.2
Medtr1g077470 Medicago truncatula HOM05D003493 ORTHO05D003980 8.7e-49 199.9 589 27.7
Oeu063704.1 Olea europaea HOM05D003493 ORTHO05D003980 2.5e-48 198.4 641 27.0
CDE07G1702 Ceratophyllum demersum HOM05D003493 ORTHO05D003980 1.1e-46 193.0 734 23.2
Nitab4.5_0003367g0050 Nicotiana tabacum HOM05D003493 ORTHO05D003980 1.1e-46 193.0 716 25.1
EL10Ac8g19467 Beta vulgaris HOM05D003493 ORTHO05D003980 7.6e-45 186.8 709 25.0
CDE04G1302 Ceratophyllum demersum HOM05D003493 ORTHO05D003980 2.9e-44 184.9 686 23.3
arahy.Tifrunner.gnm1.ann1.K1F8KI Arachis hypogaea HOM05D003493 ORTHO05D003980 3.2e-43 181.4 745 25.1
BcaNung05482 Brassica carinata HOM05D003493 ORTHO05D003980 2.1e-42 178.7 703 25.2
Phvul.L006701 Phaseolus vulgaris HOM05D003493 ORTHO05D003980 1.3e-41 176.0 649 26.5
Potri.018G152400 Populus trichocarpa HOM05D003493 ORTHO05D003980 1.9e-40 172.2 551 27.6
PGSC0003DMG400027062 Solanum tuberosum HOM05D003493 ORTHO05D003980 1.6e-39 169.1 286 33.2
Ciclev10019478m.g Citrus clementina HOM05D003493 ORTHO05D003980 1.1e-38 166.4 418 28.7
SEGI_25111 Sequoiadendron giganteum HOM05D003493 ORTHO05D003980 2.0e-37 162.2 463 29.2
arahy.Tifrunner.gnm1.ann1.W71D15 Arachis hypogaea HOM05D003493 ORTHO05D003980 7.6e-37 160.2 817 22.6
Os02g0827500 Oryza sativa ssp. japonica HOM05D003493 ORTHO05D003980 7.6e-37 160.2 539 25.6
FAN13G0815 Fragaria x ananassa HOM05D003493 ORTHO05D003980 1.9e-35 155.6 944 21.4
vmacro17772 Vaccinium macrocarpon HOM05D003493 ORTHO05D003980 3.5e-34 151.4 455 27.9
AUR62040635 Chenopodium quinoa HOM05D003493 ORTHO05D003980 4.6e-34 151.0 488 27.0
Gohir.A05G111401 Gossypium hirsutum HOM05D003493 ORTHO05D003980 7.9e-34 150.2 325 30.8
Oeu034417.1 Olea europaea HOM05D003493 ORTHO05D003980 7.4e-32 143.7 422 26.5
Ca_25303_v3 Cicer arietinum L. HOM05D003493 ORTHO05D003980 3.4e-29 134.8 636 25.6
DCAR_011394 Daucus carota HOM05D003493 ORTHO05D003980 1.2e-26 126.3 531 25.6
arahy.Tifrunner.gnm1.ann1.Y1U1WE Arachis hypogaea HOM05D003493 ORTHO05D003980 1.8e-17 95.9 123 40.7
arahy.Tifrunner.gnm1.ann1.28MV8S Arachis hypogaea HOM05D003493 ORTHO05D003980 2.5e-16 92.0 123 39.8
CiPaw.15G108700 Carya illinoinensis HOM05D003493 ORTHO05D003980 3.3e-16 91.7 370 25.4
Hund06742 Selenicereus undatus HOM05D003493 ORTHO05D001641 3.3e-16 91.7 700 23.7
Oeu034418.1 Olea europaea HOM05D003493 ORTHO05D003980 5.7e-16 90.9 161 31.7
DCAR_011395 Daucus carota HOM05D003493 ORTHO05D003980 7.4e-16 90.5 220 29.5
arahy.Tifrunner.gnm1.ann1.LRB6U9 Arachis hypogaea HOM05D003493 ORTHO05D003980 2.6e-13 82.0 209 28.2
COL.COLO4_22900 Corchorus olitorius HOM05D003493 ORTHO05D003980 2.6e-13 82.0 222 28.4
arahy.Tifrunner.gnm1.ann1.I3UW9X Arachis hypogaea HOM05D003493 ORTHO05D003980 3.4e-13 81.6 162 32.7
arahy.Tifrunner.gnm1.ann1.PSQB2R Arachis hypogaea HOM05D003493 ORTHO05D003980 3.8e-12 78.2 159 30.8
arahy.Tifrunner.gnm1.ann1.AF40JB Arachis hypogaea HOM05D003493 ORTHO05D003980 8.5e-12 77.0 142 33.1
Lj9C232G5 Lonicera japonica HOM05D003493 ORTHO05D003980 3.2e-11 75.1 408 22.8
Cpa.g.c34760 Carica papaya HOM05D003493 ORTHO05D003980 4.3e-08 64.7 65 41.5
Cre06.g285700 Chlamydomonas reinhardtii HOM05D003493 ORTHO05D003980 4.8e-07 61.2 93 29.0
Hund22361 Selenicereus undatus HOM05D003493 ORTHO05D003980 1.8e-06 59.3 107 32.7
Cpa.g.c43819 Carica papaya HOM05D003493 ORTHO05D003980 2.4e-06 58.9 96 32.3
MCO11G907 Micromonas commoda HOM05D003493 ORTHO05D003980 5.3e-06 57.8 532 20.3


User provided reference genes

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