Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c5_10730 Physcomitrium patens HOM05D004388 ORTHO05D005106 1.2e-54 216.5 123 100.0
Pp3c6_20300 Physcomitrium patens HOM05D004388 ORTHO05D005106 1.1e-41 173.3 123 80.5
AagrBONN_evm.TU.Sc2ySwM_228.5818 Anthoceros agrestis HOM05D004388 ORTHO05D005106 3.1e-23 112.1 99 63.6
Ciclev10030439m.g Citrus clementina HOM05D004388 ORTHO05D005106 1.9e-20 102.8 125 52.0
Oeu034076.1 Olea europaea HOM05D004388 ORTHO05D005106 3.6e-19 98.6 127 48.8
arahy.Tifrunner.gnm1.ann1.2I4SWN Arachis hypogaea HOM05D004388 ORTHO05D005106 4.6e-19 98.2 128 49.2
Hma1.2p1_1527F.1_g289065 Hydrangea macrophylla HOM05D004388 ORTHO05D005106 6.1e-19 97.8 124 46.8
VMungo1309G1869 Vigna mungo HOM05D004388 ORTHO05D005106 7.9e-19 97.4 125 49.6
TAR625G0696 Trochodendron aralioides HOM05D004388 ORTHO05D005106 1.4e-18 96.7 125 47.2
Mapoly0043s0110 Marchantia polymorpha HOM05D004388 ORTHO05D005106 1.8e-18 96.3 125 52.8
Os03g0765900 Oryza sativa ssp. japonica HOM05D004388 ORTHO05D005106 2.3e-18 95.9 118 50.8
EL10Ac1g01755 Beta vulgaris HOM05D004388 ORTHO05D005106 3.0e-18 95.5 128 45.3
CAN.G322.84 Capsicum annuum HOM05D004388 ORTHO05D005106 3.0e-18 95.5 124 45.2
Gorai.002G214600 Gossypium raimondii HOM05D004388 ORTHO05D005106 3.9e-18 95.1 130 47.7
Glyma.07G163600 Glycine max HOM05D004388 ORTHO05D005106 5.1e-18 94.7 123 51.2
Gohir.D01G173000 Gossypium hirsutum HOM05D004388 ORTHO05D005106 5.1e-18 94.7 130 47.7
Lsat_1_v5_gn_7_88020 Lactuca sativa HOM05D004388 ORTHO05D005106 5.1e-18 94.7 126 48.4
Glyma.04G035900 Glycine max HOM05D004388 ORTHO05D005106 6.7e-18 94.4 121 49.6
GSVIVG01009587001 Vitis vinifera HOM05D004388 ORTHO05D005106 6.7e-18 94.4 121 47.9
HanXRQChr16g0506081 Helianthus annuus HOM05D004388 ORTHO05D005106 8.8e-18 94.0 124 46.8
Phvul.009G061900 Phaseolus vulgaris HOM05D004388 ORTHO05D005106 8.8e-18 94.0 119 48.7
Nn5g29406 Nelumbo nucifera HOM05D004388 ORTHO05D005106 1.1e-17 93.6 127 43.3
Glyma.06G035900 Glycine max HOM05D004388 ORTHO05D005106 1.9e-17 92.8 119 50.4
A09p55160 Brassica napus HOM05D004388 ORTHO05D005106 2.5e-17 92.4 124 45.2
BraA09t40924Z Brassica rapa HOM05D004388 ORTHO05D005106 2.5e-17 92.4 124 45.2
AUR62040093 Chenopodium quinoa HOM05D004388 ORTHO05D005106 2.5e-17 92.4 126 46.0
PSO170G0356 Papaver somniferum HOM05D004388 ORTHO05D005106 2.5e-17 92.4 124 47.6
CSS0032006 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 3.3e-17 92.0 104 49.0
CiPaw.05G058500 Carya illinoinensis HOM05D004388 ORTHO05D005106 3.3e-17 92.0 120 42.5
Lj1g0026402 Lotus japonicus HOM05D004388 ORTHO05D005106 3.3e-17 92.0 127 49.6
Manes.05G168800 Manihot esculenta HOM05D004388 ORTHO05D005106 3.3e-17 92.0 130 46.2
Cfa004944 Carpinus fangiana HOM05D004388 ORTHO05D005106 4.3e-17 91.7 89 51.7
Solyc01g109040.4 Solanum lycopersicum HOM05D004388 ORTHO05D005106 4.3e-17 91.7 123 44.7
VMungo1215G1405 Vigna mungo HOM05D004388 ORTHO05D005106 4.3e-17 91.7 123 48.8
BcaC07g40816 Brassica carinata HOM05D004388 ORTHO05D005106 5.7e-17 91.3 124 45.2
C08p38090 Brassica napus HOM05D004388 ORTHO05D005106 5.7e-17 91.3 124 45.2
BolC8t51384H Brassica oleracea HOM05D004388 ORTHO05D005106 5.7e-17 91.3 124 45.2
PSO541G0781 Papaver somniferum HOM05D004388 ORTHO05D005106 5.7e-17 91.3 123 48.8
PGR042G3241 Punica granatum HOM05D004388 ORTHO05D005106 5.7e-17 91.3 119 44.5
Sopen01g051240 Solanum pennellii HOM05D004388 ORTHO05D005106 5.7e-17 91.3 123 43.9
AUR62033874 Chenopodium quinoa HOM05D004388 ORTHO05D005106 7.4e-17 90.9 129 45.7
Phvul.003G011200 Phaseolus vulgaris HOM05D004388 ORTHO05D005106 7.4e-17 90.9 121 47.9
Aqoxy6G00936 Aquilegia oxysepala HOM05D004388 ORTHO05D005106 9.7e-17 90.5 126 45.2
Glyma.20G008600 Glycine max HOM05D004388 ORTHO05D005106 9.7e-17 90.5 128 49.2
Gohir.A01G181900 Gossypium hirsutum HOM05D004388 ORTHO05D005106 9.7e-17 90.5 130 46.2
PGSC0003DMG402025831 Solanum tuberosum HOM05D004388 ORTHO05D005106 9.7e-17 90.5 123 44.7
THA.LOC104803691 Tarenaya hassleriana HOM05D004388 ORTHO05D005106 9.7e-17 90.5 124 43.5
Aa31LG5G9370 Aethionema arabicum HOM05D004388 ORTHO05D005106 1.3e-16 90.1 103 47.6
Atru.BG.71.p Acer truncatum HOM05D004388 ORTHO05D005106 1.7e-16 89.7 91 49.5
TAR376G0986 Trochodendron aralioides HOM05D004388 ORTHO05D005106 1.7e-16 89.7 127 44.1
Ah.09g229630 Amaranthus hybridus HOM05D004388 ORTHO05D005106 2.2e-16 89.4 123 43.1
DCAR_000094 Daucus carota HOM05D004388 ORTHO05D005106 2.2e-16 89.4 113 47.8
DCAR_029046 Daucus carota HOM05D004388 ORTHO05D005106 2.2e-16 89.4 113 47.8
TWI56G1138 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 2.2e-16 89.4 125 44.8
QL03p018404 Quercus lobata HOM05D004388 ORTHO05D005106 2.8e-16 89.0 120 43.3
Cfa018482 Carpinus fangiana HOM05D004388 ORTHO05D005106 3.7e-16 88.6 127 43.3
Sabra09G0082900 Salix brachista HOM05D004388 ORTHO05D005106 3.7e-16 88.6 129 47.3
Ca_12477_v3 Cicer arietinum L. HOM05D004388 ORTHO05D005106 4.8e-16 88.2 124 44.4
Gohir.D02G236000 Gossypium hirsutum HOM05D004388 ORTHO05D005106 4.8e-16 88.2 122 45.1
Gorai.005G264100 Gossypium raimondii HOM05D004388 ORTHO05D005106 4.8e-16 88.2 115 47.0
MBI16_g31481_MAGBIO Magnolia biondii HOM05D004388 ORTHO05D005106 4.8e-16 88.2 125 43.2
Gohir.A03G214500 Gossypium hirsutum HOM05D004388 ORTHO05D005106 6.3e-16 87.8 115 46.1
Lalb_Chr11g0062471 Lupinus albus HOM05D004388 ORTHO05D005106 6.3e-16 87.8 122 45.9
Manes.15G145400 Manihot esculenta HOM05D004388 ORTHO05D005106 6.3e-16 87.8 129 46.5
Dinv36015 Davidia involucrata HOM05D004388 ORTHO05D005106 8.2e-16 87.4 126 42.9
Sc15g0006590 Simmondsia chinensis HOM05D004388 ORTHO05D005106 8.2e-16 87.4 125 44.0
COL.COLO4_17768 Corchorus olitorius HOM05D004388 ORTHO05D005106 1.1e-15 87.0 123 45.5
MD05G1072400 Malus domestica HOM05D004388 ORTHO05D005106 1.1e-15 87.0 121 44.6
Medtr1g034260 Medicago truncatula HOM05D004388 ORTHO05D005106 1.1e-15 87.0 126 46.0
QL11p039202 Quercus lobata HOM05D004388 ORTHO05D005106 1.1e-15 87.0 120 41.7
CSS0020304 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 1.4e-15 86.7 121 43.0
Potri.014G037000 Populus trichocarpa HOM05D004388 ORTHO05D005106 1.4e-15 86.7 130 47.7
Sp4g07480 Schrenkiella parvula HOM05D004388 ORTHO05D005106 1.4e-15 86.7 124 41.9
CSS0016442 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 1.8e-15 86.3 121 43.0
Nn6g32144 Nelumbo nucifera HOM05D004388 ORTHO05D005106 1.8e-15 86.3 122 42.6
Cpa.g.sc64.17 Carica papaya HOM05D004388 ORTHO05D005106 2.4e-15 85.9 123 43.1
ECA236G2461 Erigeron canadensis HOM05D004388 ORTHO05D005106 2.4e-15 85.9 124 44.4
Gorai.010G015700 Gossypium raimondii HOM05D004388 ORTHO05D005106 2.4e-15 85.9 131 45.0
Peaxi162Scf00684g00563 Petunia axillaris HOM05D004388 ORTHO05D005106 2.4e-15 85.9 120 42.5
ClCG02G005540 Citrullus lanatus HOM05D004388 ORTHO05D005106 3.1e-15 85.5 123 44.7
Lalb_Chr10g0095391 Lupinus albus HOM05D004388 ORTHO05D005106 3.1e-15 85.5 122 43.4
Peaxi162Scf00016g01338 Petunia axillaris HOM05D004388 ORTHO05D005106 3.1e-15 85.5 121 42.1
Potri.004G147300 Populus trichocarpa HOM05D004388 ORTHO05D005106 3.1e-15 85.5 129 43.4
Prupe.8G112900 Prunus persica HOM05D004388 ORTHO05D005106 3.1e-15 85.5 120 44.2
TWI36G1636 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 3.1e-15 85.5 132 43.2
Nitab4.5_0001401g0180 Nicotiana tabacum HOM05D004388 ORTHO05D005106 4.1e-15 85.1 124 42.7
BcaB01g03018 Brassica carinata HOM05D004388 ORTHO05D005106 5.3e-15 84.7 126 44.4
DCAR_001610 Daucus carota HOM05D004388 ORTHO05D005106 5.3e-15 84.7 126 40.5
Duzib052G1120 Durio zibethinus HOM05D004388 ORTHO05D005106 5.3e-15 84.7 125 44.8
Thhalv10001257m.g Eutrema salsugineum HOM05D004388 ORTHO05D005106 5.3e-15 84.7 124 41.1
MD10G1086700 Malus domestica HOM05D004388 ORTHO05D005106 5.3e-15 84.7 110 46.4
Psat6g097040 Pisum sativum HOM05D004388 ORTHO05D005106 5.3e-15 84.7 129 48.1
Sed0011034 Sechium edule HOM05D004388 ORTHO05D005106 5.3e-15 84.7 125 43.2
Zm00001eb214080 Zea mays HOM05D004388 ORTHO05D005106 5.3e-15 84.7 109 48.6
ATR0733G197 Amborella trichopoda HOM05D004388 ORTHO05D005106 6.9e-15 84.3 123 39.8
Eucgr.G01518 Eucalyptus grandis HOM05D004388 ORTHO05D005106 6.9e-15 84.3 121 43.8
Lalb_Chr08g0245721 Lupinus albus HOM05D004388 ORTHO05D005106 6.9e-15 84.3 123 44.7
Nitab4.5_0008194g0060 Nicotiana tabacum HOM05D004388 ORTHO05D005106 6.9e-15 84.3 124 41.9
Potri.009G108700 Populus trichocarpa HOM05D004388 ORTHO05D005106 6.9e-15 84.3 127 44.9
CiPaw.16G051700 Carya illinoinensis HOM05D004388 ORTHO05D005106 9.1e-15 84.0 122 41.8
Duzib248G0675 Durio zibethinus HOM05D004388 ORTHO05D005106 9.1e-15 84.0 111 45.0
SalBow6G5992 Salvia bowleyana HOM05D004388 ORTHO05D005106 9.1e-15 84.0 121 46.3
SMO361G0239 Selaginella moellendorffii HOM05D004388 ORTHO05D005106 9.1e-15 84.0 113 46.9
CARHR118500 Cardamine hirsuta HOM05D004388 ORTHO05D005106 1.2e-14 83.6 124 39.5
HanXRQChr04g0128391 Helianthus annuus HOM05D004388 ORTHO05D005106 1.2e-14 83.6 127 45.7
Hma1.2p1_0584F.1_g183220 Hydrangea macrophylla HOM05D004388 ORTHO05D005106 1.2e-14 83.6 127 42.5
CBR_g48936 Chara braunii HOM05D004388 ORTHO05D005106 1.5e-14 83.2 127 46.5
Thecc.02G028000 Theobroma cacao HOM05D004388 ORTHO05D005106 1.5e-14 83.2 121 41.3
TPR.G40836 Trifolium pratense HOM05D004388 ORTHO05D005106 1.5e-14 83.2 79 58.2
AT2G26500 Arabidopsis thaliana HOM05D004388 ORTHO05D005106 2.0e-14 82.8 126 43.7
FAN15G0910 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.0e-14 82.8 124 41.9
MSTRG.20123 Avicennia marina HOM05D004388 ORTHO05D005106 2.6e-14 82.4 124 47.6
Cc02_g18220 Coffea canephora HOM05D004388 ORTHO05D005106 2.6e-14 82.4 124 40.3
COL.COLO4_26416 Corchorus olitorius HOM05D004388 ORTHO05D005106 2.6e-14 82.4 129 43.4
Sopen10g022090 Solanum pennellii HOM05D004388 ORTHO05D005106 2.6e-14 82.4 127 41.7
TWI12G0249 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 2.6e-14 82.4 130 43.8
AL4G19340 Arabidopsis lyrata HOM05D004388 ORTHO05D005106 3.4e-14 82.0 126 42.9
FvH4_7g04430 Fragaria vesca HOM05D004388 ORTHO05D005106 3.4e-14 82.0 123 40.7
FAN06G3575 Fragaria x ananassa HOM05D004388 ORTHO05D005106 3.4e-14 82.0 123 40.7
PGSC0003DMG400006208 Solanum tuberosum HOM05D004388 ORTHO05D005106 3.4e-14 82.0 126 40.5
Carub.0004s0666 Capsella rubella HOM05D004388 ORTHO05D005106 4.5e-14 81.6 126 42.9
MELO3C018419.2 Cucumis melo HOM05D004388 ORTHO05D005106 4.5e-14 81.6 128 41.4
FAN20G1062 Fragaria x ananassa HOM05D004388 ORTHO05D005106 4.5e-14 81.6 84 51.2
unitig_744.g24243 Utricularia gibba HOM05D004388 ORTHO05D005106 4.5e-14 81.6 120 42.5
FAN06G4461 Fragaria x ananassa HOM05D004388 ORTHO05D005106 5.9e-14 81.3 123 40.7
FAN27G3490 Fragaria x ananassa HOM05D004388 ORTHO05D005106 5.9e-14 81.3 122 41.8
Duzib132G0841 Durio zibethinus HOM05D004388 ORTHO05D005106 7.7e-14 80.9 123 39.8
Migut.B00292 Erythranthe guttata HOM05D004388 ORTHO05D005106 7.7e-14 80.9 123 44.7
FvH4_2g07330 Fragaria vesca HOM05D004388 ORTHO05D005106 1.0e-13 80.5 122 41.8
FAN24G3543 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.0e-13 80.5 122 41.8
FAN03G2535 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.3e-13 80.1 122 41.0
FAN10G0172 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.3e-13 80.1 123 39.8
Sabra14G0026600 Salix brachista HOM05D004388 ORTHO05D005106 1.3e-13 80.1 130 43.1
Zm00001eb058590 Zea mays HOM05D004388 ORTHO05D005106 1.3e-13 80.1 119 49.6
CsaV3_7G010090 Cucumis sativus L. HOM05D004388 ORTHO05D005106 2.2e-13 79.3 128 40.6
RcHm_v2.0_Chr3g0487591 Rosa chinensis HOM05D004388 ORTHO05D005106 2.2e-13 79.3 123 38.2
FAN26G1198 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.9e-13 79.0 122 39.3
FAN28G0470 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.9e-13 79.0 122 39.3
unitig_21.g20762 Utricularia gibba HOM05D004388 ORTHO05D005106 3.8e-13 78.6 120 40.8
Duzib248G0127 Durio zibethinus HOM05D004388 ORTHO05D005106 6.5e-13 77.8 130 40.0
FvH4_1g27200 Fragaria vesca HOM05D004388 ORTHO05D005106 6.5e-13 77.8 122 38.5
FAN23G2994 Fragaria x ananassa HOM05D004388 ORTHO05D005106 6.5e-13 77.8 122 39.3
FAN28G0922 Fragaria x ananassa HOM05D004388 ORTHO05D005106 6.5e-13 77.8 122 39.3
FAN19G2330 Fragaria x ananassa HOM05D004388 ORTHO05D005106 8.5e-13 77.4 122 38.5
CANSAT25G3863 Cannabis sativa HOM05D004388 ORTHO05D005106 1.1e-12 77.0 127 39.4
Duzib248G1645 Durio zibethinus HOM05D004388 ORTHO05D005106 1.1e-12 77.0 128 38.3
Lalb_Chr01g0003011 Lupinus albus HOM05D004388 ORTHO05D005106 1.4e-12 76.6 107 41.1
HPP92_017776 Vanilla planifolia HOM05D004388 ORTHO05D005106 4.2e-12 75.1 128 41.4
unitig_0.g849 Utricularia gibba HOM05D004388 ORTHO05D005106 7.2e-12 74.3 123 41.5
arahy.Tifrunner.gnm1.ann1.RG9LRA Arachis hypogaea HOM05D004388 ORTHO05D005106 1.2e-11 73.6 121 41.3
Thecc.08G017000 Theobroma cacao HOM05D004388 ORTHO05D005106 1.2e-11 73.6 133 41.4
arahy.Tifrunner.gnm1.ann1.ISKM3Z Arachis hypogaea HOM05D004388 ORTHO05D005106 1.0e-10 70.5 121 39.7
Actinidia00479 Actinidia chinensis HOM05D000395 ORTHO05D005106 1.8e-10 69.7 125 40.0
BcaB08g35304 Brassica carinata HOM05D004388 ORTHO05D005106 5.1e-10 68.2 52 63.5
SEGI_27588 Sequoiadendron giganteum HOM05D004388 ORTHO05D005106 5.1e-10 68.2 126 44.4
CDE01G0191 Ceratophyllum demersum HOM05D004388 ORTHO05D005106 1.1e-09 67.0 60 60.0
Rhsim05G0079000 Rhododendron simsii HOM05D004388 ORTHO05D005106 1.5e-09 66.6 127 40.9
SGA_v2.0_scaffold58G20597 Striga asiatica HOM05D004388 ORTHO05D005106 2.2e-08 62.8 126 34.9
Eucgr.I01216 Eucalyptus grandis HOM05D004388 ORTHO05D005106 4.8e-08 61.6 105 34.3


User provided reference genes

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