Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c5_10130 Physcomitrium patens HOM05D001551 ORTHO05D005859 8.3e-183 643.7 343 100.0
Pp3c6_23000 Physcomitrium patens HOM05D001551 ORTHO05D005859 5.1e-140 501.5 314 81.5
AagrBONN_evm.TU.Sc2ySwM_368.1985 Anthoceros agrestis HOM05D001551 ORTHO05D005859 9.9e-120 434.1 262 77.1
Mapoly0002s0145 Marchantia polymorpha HOM05D001551 ORTHO05D005859 5.1e-116 421.8 264 75.8
SMO118G0459 Selaginella moellendorffii HOM05D001551 ORTHO05D005859 4.2e-110 402.1 240 77.5
Thecc.03G141800 Theobroma cacao HOM05D001551 ORTHO05D005859 7.2e-102 374.8 225 72.0
TAR629G2635 Trochodendron aralioides HOM05D001551 ORTHO05D005859 4.6e-101 372.1 234 69.2
Duzib205G1491 Durio zibethinus HOM05D001551 ORTHO05D005859 7.9e-101 371.3 225 72.0
Cpa.g.sc2215.3 Carica papaya HOM05D001551 ORTHO05D005859 1.0e-100 370.9 222 72.5
Gohir.A11G038800 Gossypium hirsutum HOM05D001551 ORTHO05D005859 1.4e-100 370.5 233 69.1
CiPaw.12G000400 Carya illinoinensis HOM05D001551 ORTHO05D005859 2.3e-100 369.8 227 70.5
Gohir.D11G042000 Gossypium hirsutum HOM05D001551 ORTHO05D005859 3.0e-100 369.4 233 69.5
Atru.chr6.1937 Acer truncatum HOM05D001551 ORTHO05D005859 3.9e-100 369.0 222 71.2
Hma1.2p1_0577F.1_g182180 Hydrangea macrophylla HOM05D001551 ORTHO05D005859 8.8e-100 367.9 242 66.9
Gohir.A03G055800 Gossypium hirsutum HOM05D001551 ORTHO05D005859 1.1e-99 367.5 243 68.3
Cc04_g05770 Coffea canephora HOM05D001551 ORTHO05D005859 2.5e-99 366.3 222 70.7
QL10p000300 Quercus lobata HOM05D001551 ORTHO05D005859 2.5e-99 366.3 226 68.6
Aqoxy5G03068 Aquilegia oxysepala HOM05D001551 ORTHO05D005859 3.3e-99 365.9 243 67.1
CSS0002484 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 4.3e-99 365.5 238 66.8
GSVIVG01008663001 Vitis vinifera HOM05D001551 ORTHO05D005859 4.3e-99 365.5 235 70.2
Gorai.007G045200 Gossypium raimondii HOM05D001551 ORTHO05D005859 5.7e-99 365.2 234 69.2
CSS0038575 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 9.7e-99 364.4 240 66.7
Lsat_1_v5_gn_5_9381 Lactuca sativa HOM05D001551 ORTHO05D005859 9.7e-99 364.4 232 67.7
Lj9C488G12 Lonicera japonica HOM05D001551 ORTHO05D005859 9.7e-99 364.4 223 70.0
MD06G1129000 Malus domestica HOM05D001551 ORTHO05D005859 1.3e-98 364.0 237 66.2
Cfa018920 Carpinus fangiana HOM05D001551 ORTHO05D005859 2.2e-98 363.2 226 69.5
TWI23G1313 Tripterygium wilfordii HOM05D001551 ORTHO05D005859 2.2e-98 363.2 230 68.7
Haze_07303 Corylus avellana HOM05D006543 ORTHO05D008308 2.8e-98 362.8 229 68.6
Gohir.D03G110700 Gossypium hirsutum HOM05D001551 ORTHO05D005859 3.7e-98 362.5 238 67.6
MD14G1145900 Malus domestica HOM05D001551 ORTHO05D005859 3.7e-98 362.5 237 65.8
THA.LOC104808046 Tarenaya hassleriana HOM05D001551 ORTHO05D005859 3.7e-98 362.5 224 70.5
COL.COLO4_37269 Corchorus olitorius HOM05D001551 ORTHO05D005859 6.3e-98 361.7 225 69.3
Potri.012G109800 Populus trichocarpa HOM05D001551 ORTHO05D005859 8.2e-98 361.3 241 66.8
CDE02G1325 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 1.8e-97 360.1 257 63.0
Gorai.003G117100 Gossypium raimondii HOM05D001551 ORTHO05D005859 1.8e-97 360.1 256 64.8
RcHm_v2.0_Chr7g0188531 Rosa chinensis HOM05D001551 ORTHO05D005859 1.8e-97 360.1 224 70.5
SalBow7G1162 Salvia bowleyana HOM05D001551 ORTHO05D005859 2.4e-97 359.8 256 62.9
MSTRG.22814 Avicennia marina HOM05D001551 ORTHO05D005859 3.1e-97 359.4 257 61.9
BcaC09g50811 Brassica carinata HOM05D001551 ORTHO05D005859 3.1e-97 359.4 234 65.8
Solyc06g068760.3 Solanum lycopersicum HOM05D001551 ORTHO05D005859 3.1e-97 359.4 222 68.5
A01p16340 Brassica napus HOM05D001551 ORTHO05D005859 4.1e-97 359.0 234 65.8
C01p20490 Brassica napus HOM05D001551 ORTHO05D005859 5.3e-97 358.6 234 65.8
FAN13G0525 Fragaria x ananassa HOM05D001551 ORTHO05D005859 5.3e-97 358.6 223 70.0
Eucgr.K02189 Eucalyptus grandis HOM05D001551 ORTHO05D005859 6.9e-97 358.2 225 69.3
Nitab4.5_0012775g0030 Nicotiana tabacum HOM05D001551 ORTHO05D005859 6.9e-97 358.2 243 65.4
Sabra12G0080000 Salix brachista HOM05D001551 ORTHO05D005859 6.9e-97 358.2 240 65.8
TAR371G0091 Trochodendron aralioides HOM05D001551 ORTHO05D005859 6.9e-97 358.2 230 67.4
BcaNung03998 Brassica carinata HOM05D001551 ORTHO05D005859 9.1e-97 357.8 234 65.8
Cfa018698 Carpinus fangiana HOM05D001551 ORTHO05D005859 9.1e-97 357.8 226 69.0
Lalb_Chr08g0237601 Lupinus albus HOM05D001551 ORTHO05D005859 9.1e-97 357.8 235 66.4
Phvul.009G160500 Phaseolus vulgaris HOM05D001551 ORTHO05D005859 1.2e-96 357.5 234 65.8
FvH4_5g09710 Fragaria vesca HOM05D001551 ORTHO05D005859 1.5e-96 357.1 225 69.3
FAN04G0171 Fragaria x ananassa HOM05D001551 ORTHO05D005859 1.5e-96 357.1 225 69.3
BraA01t01589Z Brassica rapa HOM05D001551 ORTHO05D005859 2.0e-96 356.7 234 65.0
CAN.G1089.16 Capsicum annuum HOM05D001551 ORTHO05D005859 2.0e-96 356.7 243 65.0
HanXRQChr05g0155371 Helianthus annuus HOM05D001551 ORTHO05D005859 2.0e-96 356.7 234 66.7
Lj1g0018460 Lotus japonicus HOM05D001551 ORTHO05D005859 2.0e-96 356.7 234 65.4
Manes.14G043800 Manihot esculenta HOM05D001551 ORTHO05D005859 3.4e-96 355.9 243 65.0
Nitab4.5_0007345g0100 Nicotiana tabacum HOM05D001551 ORTHO05D005859 4.5e-96 355.5 243 65.0
Rhsim12G0181300 Rhododendron simsii HOM05D001551 ORTHO05D005859 4.5e-96 355.5 224 68.8
FAN18G2118 Fragaria x ananassa HOM05D001551 ORTHO05D005859 7.7e-96 354.8 225 68.9
Sopen06g026040 Solanum pennellii HOM05D001551 ORTHO05D005859 7.7e-96 354.8 223 68.2
Ca_10874_v3 Cicer arietinum L. HOM05D001551 ORTHO05D005859 1.0e-95 354.4 221 68.3
PGSC0003DMG400025575 Solanum tuberosum HOM05D001551 ORTHO05D005859 1.0e-95 354.4 223 68.2
FAN08G3006 Fragaria x ananassa HOM05D001551 ORTHO05D005859 1.3e-95 354.0 225 68.9
PSO017G1738 Papaver somniferum HOM05D001551 ORTHO05D005859 1.3e-95 354.0 245 64.5
BolC1t01980H Brassica oleracea HOM05D001551 ORTHO05D005859 1.7e-95 353.6 234 65.0
Sp6g13170 Schrenkiella parvula HOM05D001551 ORTHO05D005859 2.2e-95 353.2 223 68.2
Actinidia08913 Actinidia chinensis HOM05D001551 ORTHO05D005859 2.9e-95 352.8 242 63.2
Prupe.5G140300 Prunus persica HOM05D001551 ORTHO05D005859 2.9e-95 352.8 237 65.0
BraA03t10931Z Brassica rapa HOM05D001551 ORTHO05D005859 6.5e-95 351.7 232 66.8
Glyma.04G202400 Glycine max HOM05D001551 ORTHO05D005859 6.5e-95 351.7 237 65.0
PSO478G5149 Papaver somniferum HOM05D001551 ORTHO05D005859 6.5e-95 351.7 245 64.1
Hund10026 Selenicereus undatus HOM05D001551 ORTHO05D005859 6.5e-95 351.7 240 64.6
Ciclev10032408m.g Citrus clementina HOM05D001551 ORTHO05D005859 8.5e-95 351.3 234 66.2
Glyma.06G163100 Glycine max HOM05D001551 ORTHO05D005859 8.5e-95 351.3 222 66.7
THA.LOC104811554 Tarenaya hassleriana HOM05D001551 ORTHO05D005859 8.5e-95 351.3 220 69.1
Rhsim08G0198700 Rhododendron simsii HOM05D001551 ORTHO05D005859 1.1e-94 350.9 223 66.8
Os11g0524300 Oryza sativa ssp. japonica HOM05D001551 ORTHO05D005859 1.4e-94 350.5 228 66.7
arahy.Tifrunner.gnm1.ann1.D8JD58 Arachis hypogaea HOM05D001551 ORTHO05D005859 1.9e-94 350.1 222 67.1
arahy.Tifrunner.gnm1.ann1.Q2CTBB Arachis hypogaea HOM05D001551 ORTHO05D005859 1.9e-94 350.1 222 67.1
Medtr3g098510 Medicago truncatula HOM05D001551 ORTHO05D005859 1.9e-94 350.1 221 65.2
MELO3C002387.2 Cucumis melo HOM05D001551 ORTHO05D005859 2.5e-94 349.7 240 64.2
Migut.I00664 Erythranthe guttata HOM05D001551 ORTHO05D005859 5.5e-94 348.6 241 62.7
Sc04g0000180 Simmondsia chinensis HOM05D001551 ORTHO05D005859 5.5e-94 348.6 248 62.1
AL8G25230 Arabidopsis lyrata HOM05D001551 ORTHO05D005859 7.2e-94 348.2 222 67.1
vmacro19115 Vaccinium macrocarpon HOM05D001551 ORTHO05D005859 7.2e-94 348.2 223 64.6
AT5G51020 Arabidopsis thaliana HOM05D001551 ORTHO05D005859 9.4e-94 347.8 222 67.1
EL10Ac5g11272 Beta vulgaris HOM05D001551 ORTHO05D005859 9.4e-94 347.8 247 62.3
CsaV3_1G009930 Cucumis sativus L. HOM05D001551 ORTHO05D005859 9.4e-94 347.8 240 63.8
Aa31LG3G7480 Aethionema arabicum HOM05D001551 ORTHO05D005859 1.2e-93 347.4 224 67.4
CBR_g30803 Chara braunii HOM05D001551 ORTHO05D005859 2.1e-93 346.7 220 69.1
CARHR257170 Cardamine hirsuta HOM05D001551 ORTHO05D005859 2.7e-93 346.3 222 67.1
Carub.0008s1102 Capsella rubella HOM05D001551 ORTHO05D005859 3.6e-93 345.9 232 64.7
PGR044G0460 Punica granatum HOM05D001551 ORTHO05D005859 6.1e-93 345.1 225 66.7
Sed0027340 Sechium edule HOM05D001551 ORTHO05D005859 1.0e-92 344.4 241 62.7
unitig_27.g25103 Utricularia gibba HOM05D001551 ORTHO05D005859 1.8e-92 343.6 222 68.0
Sp7g23070 Schrenkiella parvula HOM05D001551 ORTHO05D005859 6.7e-92 341.7 234 63.7
vmacro16761 Vaccinium macrocarpon HOM05D001551 ORTHO05D005859 1.5e-91 340.5 228 67.1
Zm00001eb170550 Zea mays HOM05D001551 ORTHO05D005859 1.5e-91 340.5 226 66.4
Actinidia36846 Actinidia chinensis HOM05D001551 ORTHO05D005859 2.6e-91 339.7 256 60.2
Psat5g055440 Pisum sativum HOM05D001551 ORTHO05D005859 3.3e-91 339.3 221 63.8
A03p16410 Brassica napus HOM05D001551 ORTHO05D005859 2.8e-90 336.3 257 60.3
Thhalv10014437m.g Eutrema salsugineum HOM05D001551 ORTHO05D005859 8.2e-90 334.7 222 65.3
Oeu051186.2 Olea europaea HOM05D001551 ORTHO05D005859 1.1e-89 334.3 272 55.1
Manes.06G127400 Manihot esculenta HOM05D001551 ORTHO05D005859 1.8e-89 333.6 235 64.7
SGA_v2.0_scaffold37G14673 Striga asiatica HOM05D001551 ORTHO05D005859 1.8e-89 333.6 205 69.3
AUR62043378 Chenopodium quinoa HOM05D001551 ORTHO05D005859 5.3e-89 332.0 253 59.3
AUR62032208 Chenopodium quinoa HOM05D001551 ORTHO05D005859 2.6e-88 329.7 251 59.0
MBI07_g13940_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 1.0e-87 327.8 258 59.7
BcaC01g06112 Brassica carinata HOM05D001551 ORTHO05D005859 1.7e-87 327.0 243 61.7
SGA_v2.0_scaffold5G02806 Striga asiatica HOM05D001551 ORTHO05D005859 5.5e-86 322.0 246 59.3
ClCG03G004050 Citrullus lanatus HOM05D001551 ORTHO05D005859 9.4e-86 321.2 213 65.7
Peaxi162Scf00207g00254 Petunia axillaris HOM05D001551 ORTHO05D005859 1.6e-85 320.5 243 60.5
DCAR_025640 Daucus carota HOM05D001551 ORTHO05D005859 2.7e-85 319.7 256 57.4
Sed0019000 Sechium edule HOM05D001551 ORTHO05D005859 2.7e-85 319.7 257 58.8
SEGI_34423 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 8.8e-84 314.7 192 72.4
TWI39G0428 Tripterygium wilfordii HOM05D001551 ORTHO05D005859 1.5e-83 313.9 242 59.5
Dinv13710 Davidia involucrata HOM05D001551 ORTHO05D005859 3.7e-82 309.3 201 66.2
Actinidia18288 Actinidia chinensis HOM05D001551 ORTHO05D005859 2.0e-80 303.5 205 62.4
Actinidia25511 Actinidia chinensis HOM05D001551 ORTHO05D005859 5.0e-79 298.9 220 60.0
Nn3g16260 Nelumbo nucifera HOM05D001551 ORTHO05D005859 7.0e-73 278.5 164 70.1
AUR62011939 Chenopodium quinoa HOM05D001551 ORTHO05D005859 6.5e-71 271.9 254 51.6
TPR.G16934 Trifolium pratense HOM05D001551 ORTHO05D005859 5.5e-70 268.9 162 67.3
Nn4g22121 Nelumbo nucifera HOM05D001551 ORTHO05D005859 1.2e-67 261.2 222 54.5
Haze_07088 Corylus avellana HOM05D001551 ORTHO05D005859 7.5e-67 258.5 202 56.9
Dinv23235 Davidia involucrata HOM05D001551 ORTHO05D005859 3.7e-66 256.1 162 67.3
Hund02515 Selenicereus undatus HOM05D001551 ORTHO05D005859 2.4e-65 253.4 256 48.4
AUR62043863 Chenopodium quinoa HOM05D001551 ORTHO05D005859 4.1e-65 252.7 300 44.7
MBI07_g48061_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 4.1e-57 226.1 131 72.5
Duzib084G0881 Durio zibethinus HOM05D001551 ORTHO05D005859 1.6e-56 224.2 132 69.7
HPP92_009738 Vanilla planifolia HOM05D001551 ORTHO05D005859 4.5e-56 222.6 186 57.5
Thhalv10025970m.g Eutrema salsugineum HOM05D001551 ORTHO05D005859 2.8e-53 213.4 136 67.6
MBI07_g35983_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 8.0e-53 211.8 132 69.7
CDE06G0746 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 8.3e-50 201.8 214 48.1
Sc04g0000130 Simmondsia chinensis HOM05D001551 ORTHO05D005859 7.1e-41 172.2 122 63.9
Sc04g0000140 Simmondsia chinensis HOM05D001551 ORTHO05D005859 1.4e-36 157.9 111 61.3
SEGI_13041 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 3.1e-28 130.2 66 78.8
Pp3c16_270 Physcomitrium patens HOM05D001551 ORTHO05D005859 1.7e-26 124.4 66 83.3
CSS0038626 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 3.0e-23 113.6 69 66.7
CSS0016811 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 2.1e-21 107.5 79 59.5
FvH4_6g04500 Fragaria vesca HOM05D001551 ORTHO05D005859 6.2e-21 105.9 70 64.3
Psat3g122800 Pisum sativum HOM05D001551 ORTHO05D005859 4.4e-19 99.8 81 54.3
HanXRQChr05g0130591 Helianthus annuus HOM05D001551 ORTHO05D005859 4.6e-16 89.7 52 71.2
ECA246G1749 Erigeron canadensis HOM05D001551 ORTHO05D005859 7.9e-16 89.0 62 66.1
SEGI_34327 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 7.3e-14 82.4 63 65.1
Cfa013473 Carpinus fangiana HOM05D001551 ORTHO05D005859 4.8e-13 79.7 62 62.9
BcaC01g06064 Brassica carinata HOM05D001551 ORTHO05D005859 1.2e-11 75.1 83 49.4
C03p19300 Brassica napus HOM05D001551 ORTHO05D042173 4.5e-11 73.2 89 40.4
Psat5g306440 Pisum sativum HOM05D001551 ORTHO05D006558 2.2e-10 70.9 69 47.8
Psat7g261640 Pisum sativum HOM05D001551 ORTHO05D005859 3.8e-10 70.1 81 45.7
Sabra15G0128500 Salix brachista HOM05D001551 ORTHO05D003058 6.0e-08 62.8 65 46.2
Duzib084G0670 Durio zibethinus HOM05D001551 ORTHO05D005859 1.5e-06 58.2 55 52.7


User provided reference genes

Program Settings