Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c5_10010 Physcomitrium patens HOM05D004337 ORTHO05D005422 0.0e+00 1310.0 642 100.0
Mapoly0020s0073 Marchantia polymorpha HOM05D004337 ORTHO05D005422 4.0e-231 805.1 662 65.0
SMO116G0204 Selaginella moellendorffii HOM05D004337 ORTHO05D005422 1.3e-221 773.5 572 68.2
CiPaw.15G184900 Carya illinoinensis HOM05D004337 ORTHO05D005422 6.4e-221 771.2 587 64.1
Prupe.4G286100 Prunus persica HOM05D004337 ORTHO05D005422 2.4e-220 769.2 587 63.2
MD15G1140200 Malus domestica HOM05D004337 ORTHO05D005422 3.5e-219 765.4 610 62.5
Zm00001eb082160 Zea mays HOM05D004337 ORTHO05D005422 3.5e-219 765.4 624 62.2
MBI06_g32147_MAGBIO Magnolia biondii HOM05D004337 ORTHO05D005422 6.7e-218 761.1 578 64.5
EL10Ac4g09743 Beta vulgaris HOM05D004337 ORTHO05D005422 5.6e-217 758.1 609 62.6
Cfa020919 Carpinus fangiana HOM05D004337 ORTHO05D005422 1.3e-216 756.9 589 62.5
BolC9t59595H Brassica oleracea HOM05D004337 ORTHO05D005422 2.8e-216 755.7 606 61.9
Zm00001eb422980 Zea mays HOM05D004337 ORTHO05D005422 1.8e-215 753.1 603 62.2
Eucgr.I00018 Eucalyptus grandis HOM05D004337 ORTHO05D005422 2.4e-215 752.7 573 62.7
Gohir.A05G375100 Gossypium hirsutum HOM05D004337 ORTHO05D005422 5.3e-215 751.5 563 64.5
Gohir.D04G040600 Gossypium hirsutum HOM05D004337 ORTHO05D005422 5.3e-215 751.5 563 64.5
Gorai.012G045800 Gossypium raimondii HOM05D004337 ORTHO05D005422 5.3e-215 751.5 563 64.5
Lj1g0000957 Lotus japonicus HOM05D004337 ORTHO05D005422 5.3e-215 751.5 590 62.9
BraA10t44874Z Brassica rapa HOM05D004337 ORTHO05D005422 6.9e-215 751.1 606 62.0
C09p68510 Brassica napus HOM05D004337 ORTHO05D005422 9.0e-215 750.7 605 61.7
VMungo1309G0234 Vigna mungo HOM05D004337 ORTHO05D005422 9.0e-215 750.7 589 63.7
arahy.Tifrunner.gnm1.ann1.X1BSDH Arachis hypogaea HOM05D004337 ORTHO05D005422 1.2e-214 750.4 584 63.5
Manes.12G081000 Manihot esculenta HOM05D004337 ORTHO05D005422 1.2e-214 750.4 585 63.1
Os04g0441900 Oryza sativa ssp. japonica HOM05D004337 ORTHO05D005422 3.4e-214 748.8 575 64.2
Sabra04G0083600 Salix brachista HOM05D004337 ORTHO05D005422 3.4e-214 748.8 593 62.6
Gohir.A12G002300 Gossypium hirsutum HOM05D004337 ORTHO05D005422 4.5e-214 748.4 565 63.7
Oeu046358.1 Olea europaea HOM05D004337 ORTHO05D005422 4.5e-214 748.4 582 62.9
GSVIVG01000243001 Vitis vinifera HOM05D004337 ORTHO05D005422 5.8e-214 748.0 596 62.4
TAR376G0777 Trochodendron aralioides HOM05D004337 ORTHO05D005422 7.6e-214 747.7 592 63.2
Dinv09624 Davidia involucrata HOM05D004337 ORTHO05D005422 9.9e-214 747.3 562 64.4
PGR119G0424 Punica granatum HOM05D004337 ORTHO05D005422 9.9e-214 747.3 578 63.8
THA.LOC104818397 Tarenaya hassleriana HOM05D004337 ORTHO05D005422 9.9e-214 747.3 566 64.5
Potri.004G134500 Populus trichocarpa HOM05D004337 ORTHO05D005422 1.3e-213 746.9 559 64.8
AL6G34865 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 1.7e-213 746.5 604 60.6
Thhalv10013045m.g Eutrema salsugineum HOM05D004337 ORTHO05D005422 4.9e-213 745.0 598 61.9
Thecc.01G146600 Theobroma cacao HOM05D004337 ORTHO05D005422 4.9e-213 745.0 561 63.8
Gorai.008G001400 Gossypium raimondii HOM05D004337 ORTHO05D005422 6.4e-213 744.6 572 62.9
MSTRG.23236 Avicennia marina HOM05D004337 ORTHO05D005422 1.9e-212 743.0 563 64.7
MELO3C003282.2 Cucumis melo HOM05D004337 ORTHO05D005422 2.4e-212 742.7 569 63.8
Aqoxy5G01850 Aquilegia oxysepala HOM05D004337 ORTHO05D005422 3.2e-212 742.3 589 63.0
Sed0025757 Sechium edule HOM05D004337 ORTHO05D005422 3.2e-212 742.3 568 63.0
THA.LOC104819366 Tarenaya hassleriana HOM05D004337 ORTHO05D005422 3.2e-212 742.3 571 62.9
Psat5g057120 Pisum sativum HOM05D004337 ORTHO05D005422 4.2e-212 741.9 586 62.5
BcaB04g19858 Brassica carinata HOM05D004337 ORTHO05D005422 5.5e-212 741.5 603 60.5
CARHR204490 Cardamine hirsuta HOM05D004337 ORTHO05D005422 5.5e-212 741.5 602 61.5
Ciclev10025224m.g Citrus clementina HOM05D004337 ORTHO05D005422 5.5e-212 741.5 571 63.6
TPR.G7800 Trifolium pratense HOM05D004337 ORTHO05D005422 5.5e-212 741.5 610 60.8
CAN.G1156.26 Capsicum annuum HOM05D004337 ORTHO05D005422 7.1e-212 741.1 576 63.5
QL10p037473 Quercus lobata HOM05D004337 ORTHO05D005422 7.1e-212 741.1 589 62.5
Phvul.009G159800 Phaseolus vulgaris HOM05D004337 ORTHO05D005422 9.3e-212 740.7 590 63.4
Hma1.2p1_0296F.1_g116900 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 1.2e-211 740.3 564 64.5
Lalb_Chr07g0183961 Lupinus albus HOM05D004337 ORTHO05D005422 1.2e-211 740.3 593 63.6
CsaV3_4G030000 Cucumis sativus L. HOM05D004337 ORTHO05D005422 1.6e-211 740.0 567 63.7
Nitab4.5_0004764g0030 Nicotiana tabacum HOM05D004337 ORTHO05D005422 1.6e-211 740.0 567 63.8
Peaxi162Scf00353g00735 Petunia axillaris HOM05D004337 ORTHO05D005422 1.6e-211 740.0 560 64.5
Potri.T045800 Populus trichocarpa HOM05D004337 ORTHO05D005422 1.6e-211 740.0 559 64.2
Hund21761 Selenicereus undatus HOM05D004337 ORTHO05D005422 1.6e-211 740.0 563 65.2
Atru.chr3.1466 Acer truncatum HOM05D004337 ORTHO05D005422 3.5e-211 738.8 586 62.3
BraA09t36334Z Brassica rapa HOM05D004337 ORTHO05D005422 3.5e-211 738.8 600 60.7
Carub.0006s2135 Capsella rubella HOM05D004337 ORTHO05D005422 3.5e-211 738.8 606 60.6
Glyma.04G203800 Glycine max HOM05D004337 ORTHO05D005422 3.5e-211 738.8 589 62.8
AT5G23575 Arabidopsis thaliana HOM05D004337 ORTHO05D005422 4.6e-211 738.4 602 59.8
Potri.018G137500 Populus trichocarpa HOM05D004337 ORTHO05D005422 4.6e-211 738.4 559 64.0
BcaB08g37252 Brassica carinata HOM05D004337 ORTHO05D005422 7.9e-211 737.6 608 60.2
Medtr3g098210 Medicago truncatula HOM05D004337 ORTHO05D005422 7.9e-211 737.6 609 60.6
Nitab4.5_0000496g0240 Nicotiana tabacum HOM05D004337 ORTHO05D005422 7.9e-211 737.6 559 64.0
PSO761G0180 Papaver somniferum HOM05D004337 ORTHO05D005422 7.9e-211 737.6 610 60.5
Actinidia36582 Actinidia chinensis HOM05D004337 ORTHO05D005422 1.0e-210 737.3 591 62.1
A10p28250 Brassica napus HOM05D004337 ORTHO05D005422 1.0e-210 737.3 605 61.0
Solyc05g056350.3 Solanum lycopersicum HOM05D004337 ORTHO05D005422 1.0e-210 737.3 587 62.9
PSO210G2848 Papaver somniferum HOM05D004337 ORTHO05D005422 1.3e-210 736.9 612 60.3
C09p07600 Brassica napus HOM05D004337 ORTHO05D005422 2.3e-210 736.1 605 59.8
Sopen05g034740 Solanum pennellii HOM05D004337 ORTHO05D005422 2.3e-210 736.1 587 62.5
BolC9t53677H Brassica oleracea HOM05D004337 ORTHO05D005422 3.9e-210 735.3 577 61.5
CARHR189960 Cardamine hirsuta HOM05D004337 ORTHO05D005422 3.9e-210 735.3 609 59.6
AL6G19170 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 5.1e-210 734.9 593 61.4
A09p06870 Brassica napus HOM05D004337 ORTHO05D005422 5.1e-210 734.9 604 60.1
BcaC04g23504 Brassica carinata HOM05D004337 ORTHO05D005422 8.7e-210 734.2 577 61.5
Lsat_1_v5_gn_2_40441 Lactuca sativa HOM05D004337 ORTHO05D005422 8.7e-210 734.2 585 62.7
Aa31LG11G2980 Aethionema arabicum HOM05D004337 ORTHO05D005422 1.5e-209 733.4 601 60.4
Glyma.06G161400 Glycine max HOM05D004337 ORTHO05D005422 1.5e-209 733.4 596 61.6
Carub.0006s0742 Capsella rubella HOM05D004337 ORTHO05D005422 1.9e-209 733.0 599 61.3
Lalb_Chr12g0202711 Lupinus albus HOM05D004337 ORTHO05D005422 1.9e-209 733.0 587 62.5
ATR1089G072 Amborella trichopoda HOM05D004337 ORTHO05D005422 2.5e-209 732.6 583 62.4
Oeu017633.3 Olea europaea HOM05D004337 ORTHO05D005422 2.5e-209 732.6 566 63.3
Thhalv10003872m.g Eutrema salsugineum HOM05D004337 ORTHO05D005422 3.3e-209 732.3 604 60.4
FvH4_1g25770 Fragaria vesca HOM05D004337 ORTHO05D005422 5.6e-209 731.5 589 61.1
ECA238G0122 Erigeron canadensis HOM05D004337 ORTHO05D005422 7.4e-209 731.1 596 61.2
PGSC0003DMG400023451 Solanum tuberosum HOM05D004337 ORTHO05D005422 7.4e-209 731.1 594 62.0
SGA_v2.0_scaffold12G06278 Striga asiatica HOM05D004337 ORTHO05D005422 7.4e-209 731.1 578 62.5
Aa31LG3G18040 Aethionema arabicum HOM05D004337 ORTHO05D005422 9.6e-209 730.7 593 60.9
Migut.H02542 Erythranthe guttata HOM05D004337 ORTHO05D005422 9.6e-209 730.7 609 59.8
Oeu054207.1 Olea europaea HOM05D004337 ORTHO05D005422 9.6e-209 730.7 597 61.1
COL.COLO4_33529 Corchorus olitorius HOM05D004337 ORTHO05D005422 1.3e-208 730.3 570 62.8
Actinidia19947 Actinidia chinensis HOM05D004337 ORTHO05D005422 2.1e-208 729.6 600 61.2
CANSAT54G2432 Cannabis sativa HOM05D004337 ORTHO05D005422 2.1e-208 729.6 570 63.2
HPP92_009218 Vanilla planifolia HOM05D004337 ORTHO05D005422 2.1e-208 729.6 587 61.2
Ca_17042_v3 Cicer arietinum L. HOM05D004337 ORTHO05D005422 3.7e-208 728.8 592 62.0
AUR62006971 Chenopodium quinoa HOM05D004337 ORTHO05D005422 1.1e-207 727.2 601 61.2
AUR62000615 Chenopodium quinoa HOM05D004337 ORTHO05D005422 1.4e-207 726.9 601 61.4
Sp2g23620 Schrenkiella parvula HOM05D004337 ORTHO05D005422 1.8e-207 726.5 576 60.9
unitig_736.g22365 Utricularia gibba HOM05D004337 ORTHO05D005422 1.8e-207 726.5 593 61.4
C07p43970 Brassica napus HOM05D004337 ORTHO05D005422 3.1e-207 725.7 577 61.0
RcHm_v2.0_Chr3g0484771 Rosa chinensis HOM05D004337 ORTHO05D005422 6.9e-207 724.5 586 60.8
FAN23G1824 Fragaria x ananassa HOM05D004337 ORTHO05D005422 9.0e-207 724.2 620 59.2
A06p34530 Brassica napus HOM05D004337 ORTHO05D005422 1.5e-206 723.4 577 60.8
BraA06t26382Z Brassica rapa HOM05D004337 ORTHO05D005422 2.6e-206 722.6 577 60.3
FAN26G1467 Fragaria x ananassa HOM05D004337 ORTHO05D005422 2.6e-206 722.6 620 59.0
FAN28G1720 Fragaria x ananassa HOM05D004337 ORTHO05D005422 2.6e-206 722.6 620 59.0
HanXRQChr10g0285831 Helianthus annuus HOM05D004337 ORTHO05D005422 2.6e-206 722.6 546 64.7
Sc16g0009860 Simmondsia chinensis HOM05D004337 ORTHO05D005422 7.6e-206 721.1 565 62.5
TWI75G1462 Tripterygium wilfordii HOM05D004337 ORTHO05D005422 7.6e-206 721.1 571 60.9
BolC7t44925H Brassica oleracea HOM05D004337 ORTHO05D005422 1.0e-205 720.7 604 59.1
FAN19G0301 Fragaria x ananassa HOM05D004337 ORTHO05D005422 1.3e-205 720.3 606 59.6
arahy.Tifrunner.gnm1.ann1.397MFZ Arachis hypogaea HOM05D004337 ORTHO05D005422 1.9e-204 716.5 626 59.6
Sp6g34400 Schrenkiella parvula HOM05D004337 ORTHO05D005422 9.3e-204 714.1 607 59.6
SGA_v2.0_scaffold51G18842 Striga asiatica HOM05D004337 ORTHO05D005422 6.7e-202 708.0 575 62.4
AT5G08500 Arabidopsis thaliana HOM05D004337 ORTHO05D005422 8.2e-200 701.0 517 65.8
Lj4A821G42 Lonicera japonica HOM05D004337 ORTHO05D005422 5.3e-199 698.4 572 60.8
Rhsim10G0124700 Rhododendron simsii HOM05D004337 ORTHO05D005422 1.5e-198 696.8 687 53.3
Nn5g27210 Nelumbo nucifera HOM05D004337 ORTHO05D005422 1.7e-197 693.3 561 62.2
Dinv10851 Davidia involucrata HOM05D004337 ORTHO05D005422 3.6e-195 685.6 516 64.3
DCAR_009619 Daucus carota HOM05D004337 ORTHO05D005422 3.9e-194 682.2 601 58.2
Peaxi162Scf00651g00114 Petunia axillaris HOM05D004337 ORTHO05D005422 1.1e-191 674.1 589 58.7
CSS0021638 Camellia sinensis var. sinensis HOM05D004337 ORTHO05D005422 1.2e-190 670.6 490 66.7
Cc00_g00820 Coffea canephora HOM05D004337 ORTHO05D005422 6.7e-178 628.2 399 75.4
AL6G18970 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 4.4e-177 625.5 887 41.7
CBR_g44530 Chara braunii HOM05D004337 ORTHO05D005422 1.6e-171 607.1 584 52.7
vmacro12739 Vaccinium macrocarpon HOM05D004337 ORTHO05D005422 4.4e-169 599.0 928 39.7
Ah.06g188230 Amaranthus hybridus HOM05D004337 ORTHO05D005422 2.5e-164 583.2 548 55.8
Haze_19353 Corylus avellana HOM05D004337 ORTHO05D005422 3.7e-160 569.3 321 81.9
AL6G18990 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 1.1e-151 541.2 426 64.1
Gohir.D12G002000 Gossypium hirsutum HOM05D004337 ORTHO05D005422 4.1e-151 539.3 565 49.9
CDE05G2996 Ceratophyllum demersum HOM05D004337 ORTHO05D005422 1.1e-148 531.2 481 57.2
Duzib264G1201 Durio zibethinus HOM05D004337 ORTHO05D005422 6.8e-146 521.9 559 49.7
SHI38349 Sapria himalayana HOM05D004337 ORTHO05D005422 9.8e-145 518.1 399 64.9
Cre09.g397900 Chlamydomonas reinhardtii HOM05D004337 ORTHO05D005422 2.4e-143 513.5 574 48.1
ClCG04G002690 Citrullus lanatus HOM05D004337 ORTHO05D005422 6.2e-131 472.2 291 77.7
AL6G19200 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 9.5e-124 448.4 435 56.1
MCO10G243 Micromonas commoda HOM05D004337 ORTHO05D005422 3.0e-117 426.8 335 61.2
Haze_27034 Corylus avellana HOM05D004337 ORTHO05D005422 6.7e-101 372.5 454 43.4
PRCOL_00006172 Prasinoderma coloniale HOM05D004337 ORTHO05D005422 6.2e-99 365.9 524 41.0
Cfa024513 Carpinus fangiana HOM05D004337 ORTHO05D005422 2.7e-94 350.5 560 37.9
Cpa.g.sc3593.1 Carica papaya HOM05D004337 ORTHO05D005422 2.2e-80 304.3 188 76.6
MCO07G426 Micromonas commoda HOM05D004337 ORTHO05D005422 3.9e-77 293.5 416 38.9
PRCOL_00005640 Prasinoderma coloniale HOM05D004337 ORTHO05D005422 5.7e-68 263.1 372 35.8
AL6G19020 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 5.0e-64 250.0 224 57.6
CDE05G3583 Ceratophyllum demersum HOM05D004337 ORTHO05D005422 8.3e-43 179.5 88 92.0
Cpa.g.sc138.38 Carica papaya HOM05D004337 ORTHO05D005422 3.5e-41 174.1 254 40.9
Haze_19352 Corylus avellana HOM05D004337 ORTHO05D005422 1.0e-40 172.6 233 39.9
HPP92_009290 Vanilla planifolia HOM05D004337 ORTHO05D005422 3.8e-40 170.6 120 65.0
SalBow8G1257 Salvia bowleyana HOM05D004337 ORTHO05D005422 9.8e-36 156.0 223 39.5
SalBow8G3722 Salvia bowleyana HOM05D004337 ORTHO05D005422 9.8e-36 156.0 223 39.5
ClCG04G002680 Citrullus lanatus HOM05D004337 ORTHO05D005422 1.2e-30 139.0 171 41.5
Hma1.2p1_0641F.1_g194250 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 5.8e-28 130.2 72 81.9
Cc00_g00810 Coffea canephora HOM05D004337 ORTHO05D005422 6.4e-27 126.7 165 39.4
Pp3c6_20370 Physcomitrium patens HOM05D004337 ORTHO05D043897 3.0e-16 91.3 54 72.2
SEGI_12766 Sequoiadendron giganteum HOM05D004337 ORTHO05D005422 3.0e-16 91.3 51 78.4
Hma1.2p1_0641F.1_g194230 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 5.6e-15 87.0 84 56.0
BcaC04g21668 Brassica carinata HOM05D004337 ORTHO05D021976 8.6e-08 63.2 150 30.7
C09p29160 Brassica napus HOM05D004337 ORTHO05D021976 8.6e-08 63.2 150 30.7
CDE05G0837 Ceratophyllum demersum HOM05D004337 ORTHO05D043897 1.9e-07 62.0 71 47.9
Psat3g077400 Pisum sativum HOM05D004337 ORTHO05D005422 1.2e-06 59.3 122 33.6


User provided reference genes

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