Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c4_8110 Physcomitrium patens HOM05D004124 ORTHO05D004779 1.0e-184 649.8 306 100.0
AagrBONN_evm.TU.Sc2ySwM_340.309 Anthoceros agrestis HOM05D004124 ORTHO05D004779 8.6e-107 391.0 309 63.8
Mapoly0005s0267 Marchantia polymorpha HOM05D004124 ORTHO05D004779 1.9e-93 346.7 309 61.2
SMO200G0023 Selaginella moellendorffii HOM05D004124 ORTHO05D004779 8.4e-62 241.5 263 54.4
AagrBONN_evm.TU.Sc2ySwM_368.334 Anthoceros agrestis HOM05D004124 ORTHO05D004779 1.5e-58 230.7 208 60.6
CBR_g53713 Chara braunii HOM05D004124 ORTHO05D004779 9.7e-58 228.0 306 46.7
Gohir.A04G140100 Gossypium hirsutum HOM05D004124 ORTHO05D004779 5.3e-40 169.1 246 44.3
Gohir.D04G183300 Gossypium hirsutum HOM05D004124 ORTHO05D004779 7.0e-40 168.7 246 44.3
Gorai.012G176300 Gossypium raimondii HOM05D004124 ORTHO05D004779 1.5e-39 167.5 246 44.3
DCAR_026459 Daucus carota HOM05D004124 ORTHO05D004779 3.5e-39 166.4 337 34.7
CiPaw.14G021000 Carya illinoinensis HOM05D004124 ORTHO05D004779 5.9e-39 165.6 240 44.6
COL.COLO4_20412 Corchorus olitorius HOM05D004124 ORTHO05D004779 1.0e-38 164.9 246 43.9
Nn1g00866 Nelumbo nucifera HOM05D004124 ORTHO05D004779 1.3e-38 164.5 233 43.3
Duzib251G0523 Durio zibethinus HOM05D004124 ORTHO05D004779 1.7e-38 164.1 246 44.3
CiPaw.13G027200 Carya illinoinensis HOM05D002637 ORTHO05D008095 2.2e-38 163.7 240 44.6
TAR375G0412 Trochodendron aralioides HOM05D004124 ORTHO05D004779 2.2e-38 163.7 233 43.8
PSO782G3756 Papaver somniferum HOM05D004124 ORTHO05D004779 2.9e-38 163.3 233 45.1
PGR102G1761 Punica granatum HOM05D004124 ORTHO05D004779 3.8e-38 162.9 245 43.7
CAN.G163.7 Capsicum annuum HOM05D004124 ORTHO05D004779 8.5e-38 161.8 243 42.0
Cc11_g16980 Coffea canephora HOM05D004124 ORTHO05D004779 1.1e-37 161.4 245 43.3
Hund06093 Selenicereus undatus HOM05D004124 ORTHO05D004779 1.5e-37 161.0 262 41.6
PGSC0003DMG400034304 Solanum tuberosum HOM05D004124 ORTHO05D004779 1.5e-37 161.0 244 43.0
Gorai.005G166600 Gossypium raimondii HOM05D004124 ORTHO05D004779 3.2e-37 159.8 245 42.4
QL03p052498 Quercus lobata HOM05D004124 ORTHO05D004779 3.2e-37 159.8 245 42.9
RcHm_v2.0_Chr4g0430131 Rosa chinensis HOM05D004124 ORTHO05D004779 4.2e-37 159.5 245 42.4
Glyma.18G252600 Glycine max HOM05D004124 ORTHO05D004779 5.5e-37 159.1 235 41.3
Prupe.1G225000 Prunus persica HOM05D004124 ORTHO05D004779 5.5e-37 159.1 241 44.0
Sopen05g010890 Solanum pennellii HOM05D004124 ORTHO05D004779 5.5e-37 159.1 243 42.4
Potri.001G056000 Populus trichocarpa HOM05D004124 ORTHO05D004779 7.2e-37 158.7 247 43.3
Ca_14066_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 1.2e-36 157.9 232 42.7
Manes.12G010400 Manihot esculenta HOM05D004124 ORTHO05D004779 1.2e-36 157.9 244 42.6
Nitab4.5_0000861g0060 Nicotiana tabacum HOM05D004124 ORTHO05D004779 1.2e-36 157.9 245 42.9
Solyc05g015500.4 Solanum lycopersicum HOM05D004124 ORTHO05D004779 1.6e-36 157.5 241 42.3
CANSAT01G0376 Cannabis sativa HOM05D004124 ORTHO05D004779 2.1e-36 157.1 245 43.3
ECA233G0726 Erigeron canadensis HOM05D004124 ORTHO05D004779 2.1e-36 157.1 267 37.5
Gohir.D02G148500 Gossypium hirsutum HOM05D004124 ORTHO05D004779 2.7e-36 156.8 245 42.0
MBI13_g33572_MAGBIO Magnolia biondii HOM05D004124 ORTHO05D004779 4.7e-36 156.0 246 42.7
Potri.003G172500 Populus trichocarpa HOM05D004124 ORTHO05D004779 4.7e-36 156.0 247 43.3
Sabra01G0040400 Salix brachista HOM05D004124 ORTHO05D004779 6.1e-36 155.6 247 42.1
CDE06G1866 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 1.0e-35 154.8 234 43.2
FAN07G1336 Fragaria x ananassa HOM05D004124 ORTHO05D004779 1.0e-35 154.8 245 41.6
MSTRG.8009 Avicennia marina HOM05D004124 ORTHO05D004779 1.4e-35 154.5 245 40.8
FvH4_4g23660 Fragaria vesca HOM05D004124 ORTHO05D004779 1.4e-35 154.5 245 41.6
FAN12G0357 Fragaria x ananassa HOM05D004124 ORTHO05D004779 1.4e-35 154.5 245 41.6
FAN17G0270 Fragaria x ananassa HOM05D004124 ORTHO05D004779 1.4e-35 154.5 245 41.6
FAN22G1987 Fragaria x ananassa HOM05D004124 ORTHO05D004779 1.4e-35 154.5 245 41.6
Rhsim12G0025300 Rhododendron simsii HOM05D004124 ORTHO05D004779 1.8e-35 154.1 248 40.7
Aqoxy3G02746 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 2.3e-35 153.7 237 40.5
AUR62005628 Chenopodium quinoa HOM05D004124 ORTHO05D004779 2.3e-35 153.7 244 41.8
Gohir.A03G125700 Gossypium hirsutum HOM05D004124 ORTHO05D004779 2.3e-35 153.7 245 41.2
Lj6g0002227 Lotus japonicus HOM05D004124 ORTHO05D004779 2.3e-35 153.7 245 41.2
Hund25468 Selenicereus undatus HOM05D004124 ORTHO05D004779 2.3e-35 153.7 262 41.6
THA.LOC104807133 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 2.3e-35 153.7 244 42.6
GSVIVG01010495001 Vitis vinifera HOM05D004124 ORTHO05D004779 2.3e-35 153.7 247 40.9
AUR62028920 Chenopodium quinoa HOM05D004124 ORTHO05D004779 3.0e-35 153.3 245 42.0
Haze_12426 Corylus avellana HOM05D004124 ORTHO05D004779 3.0e-35 153.3 243 42.0
arahy.Tifrunner.gnm1.ann1.FNBZ5S Arachis hypogaea HOM05D004124 ORTHO05D004779 3.9e-35 152.9 230 44.3
CiPaw.06G103200 Carya illinoinensis HOM05D004124 ORTHO05D004779 3.9e-35 152.9 244 42.2
HanXRQChr12g0372641 Helianthus annuus HOM05D004124 ORTHO05D004779 3.9e-35 152.9 239 41.8
MELO3C011859.2 Cucumis melo HOM05D004124 ORTHO05D004779 5.2e-35 152.5 248 42.3
CsaV3_5G030210 Cucumis sativus L. HOM05D004124 ORTHO05D004779 5.2e-35 152.5 248 42.3
arahy.Tifrunner.gnm1.ann1.4H3LGZ Arachis hypogaea HOM05D004124 ORTHO05D004779 8.8e-35 151.8 241 42.7
Dinv10949 Davidia involucrata HOM05D004124 ORTHO05D004779 8.8e-35 151.8 247 40.1
Eucgr.H04636 Eucalyptus grandis HOM05D004124 ORTHO05D004779 8.8e-35 151.8 243 41.6
Aa31sc584G20 Aethionema arabicum HOM05D004124 ORTHO05D004779 1.1e-34 151.4 243 41.6
Lalb_Chr07g0187111 Lupinus albus HOM05D004124 ORTHO05D004779 1.1e-34 151.4 244 40.6
Peaxi162Scf00128g01335 Petunia axillaris HOM05D004124 ORTHO05D004779 1.5e-34 151.0 240 40.4
THA.LOC104807526 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 1.5e-34 151.0 242 40.9
arahy.Tifrunner.gnm1.ann1.B7Q2TL Arachis hypogaea HOM05D004124 ORTHO05D004779 2.0e-34 150.6 248 40.7
AT1G67325 Arabidopsis thaliana HOM05D004124 ORTHO05D004779 3.3e-34 149.8 247 42.9
Duzib248G0967 Durio zibethinus HOM05D004124 ORTHO05D004779 3.3e-34 149.8 247 40.9
arahy.Tifrunner.gnm1.ann1.JS6392 Arachis hypogaea HOM05D004124 ORTHO05D004779 4.4e-34 149.4 245 41.2
Actinidia09646 Actinidia chinensis HOM05D004124 ORTHO05D004779 5.7e-34 149.1 245 40.8
AL2G25860 Arabidopsis lyrata HOM05D004124 ORTHO05D004779 5.7e-34 149.1 247 42.1
Lalb_Chr11g0075781 Lupinus albus HOM05D004124 ORTHO05D004779 5.7e-34 149.1 245 42.0
Nn8g41237 Nelumbo nucifera HOM05D004124 ORTHO05D004779 5.7e-34 149.1 246 41.5
Lsat_1_v5_gn_8_147801 Lactuca sativa HOM05D004124 ORTHO05D004779 7.4e-34 148.7 274 38.7
Medtr3g085190 Medicago truncatula HOM05D004124 ORTHO05D004779 7.4e-34 148.7 245 40.8
Atru.chr11.2334 Acer truncatum HOM05D004124 ORTHO05D004779 9.7e-34 148.3 248 40.7
Carub.0002s1361 Capsella rubella HOM05D004124 ORTHO05D004779 9.7e-34 148.3 257 42.8
MD16G1120200 Malus domestica HOM05D004124 ORTHO05D004779 9.7e-34 148.3 247 42.5
EL10Ac6g13513 Beta vulgaris HOM05D004124 ORTHO05D004779 1.3e-33 147.9 248 41.1
Thhalv10018870m.g Eutrema salsugineum HOM05D004124 ORTHO05D004779 1.3e-33 147.9 246 41.9
Phvul.001G262500 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 1.3e-33 147.9 245 41.2
TAR374G0532 Trochodendron aralioides HOM05D004124 ORTHO05D004779 1.3e-33 147.9 232 41.4
C06p42940 Brassica napus HOM05D004124 ORTHO05D004779 1.7e-33 147.5 245 41.6
Glyma.11G251300 Glycine max HOM05D004124 ORTHO05D004779 1.7e-33 147.5 245 40.8
TPR.G17791 Trifolium pratense HOM05D004124 ORTHO05D004779 1.7e-33 147.5 247 40.5
Psat5g096680 Pisum sativum HOM05D004124 ORTHO05D004779 2.2e-33 147.1 247 40.1
Sp5g22270 Schrenkiella parvula HOM05D004124 ORTHO05D004779 2.2e-33 147.1 244 42.2
TAR383G0859 Trochodendron aralioides HOM05D004124 ORTHO05D004779 2.2e-33 147.1 244 40.6
TAR626G1310 Trochodendron aralioides HOM05D004124 ORTHO05D004779 2.2e-33 147.1 246 40.2
MSTRG.500 Avicennia marina HOM05D004124 ORTHO05D004779 4.8e-33 146.0 249 41.8
Glyma.18G005700 Glycine max HOM05D004124 ORTHO05D004779 4.8e-33 146.0 245 40.4
TWI18G0339 Tripterygium wilfordii HOM05D004124 ORTHO05D004779 4.8e-33 146.0 245 42.4
BolC6t39143H Brassica oleracea HOM05D004124 ORTHO05D004779 6.3e-33 145.6 244 41.4
Lj3g0004507 Lotus japonicus HOM05D004124 ORTHO05D004779 6.3e-33 145.6 229 42.4
VMungo1383G0738 Vigna mungo HOM05D004124 ORTHO05D004779 6.3e-33 145.6 245 40.4
CARHR059820 Cardamine hirsuta HOM05D004124 ORTHO05D004779 8.2e-33 145.2 247 42.5
PSO063G2768 Papaver somniferum HOM05D004124 ORTHO05D004779 8.2e-33 145.2 247 39.7
PSO170G5699 Papaver somniferum HOM05D004124 ORTHO05D004779 8.2e-33 145.2 247 39.7
Sabra03G0126200 Salix brachista HOM05D004124 ORTHO05D004779 8.2e-33 145.2 224 42.4
A07p33920 Brassica napus HOM05D000660 ORTHO05D000766 1.1e-32 144.8 245 41.6
CDE06G1514 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 1.8e-32 144.1 210 41.4
Migut.K00950 Erythranthe guttata HOM05D004124 ORTHO05D004779 2.4e-32 143.7 242 39.7
HanXRQChr12g0361221 Helianthus annuus HOM05D004124 ORTHO05D004779 3.1e-32 143.3 301 35.5
Nn5g26967 Nelumbo nucifera HOM05D004124 ORTHO05D004779 3.1e-32 143.3 246 39.8
THA.LOC104825500 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 3.1e-32 143.3 242 39.3
Actinidia30642 Actinidia chinensis HOM05D004124 ORTHO05D004779 4.1e-32 142.9 244 39.8
BcaB03g15346 Brassica carinata HOM05D004124 ORTHO05D004779 4.1e-32 142.9 244 41.4
Lalb_Chr08g0230601 Lupinus albus HOM05D004124 ORTHO05D004779 5.3e-32 142.5 236 41.1
Phvul.008G046200 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 5.3e-32 142.5 241 39.8
Cfa011079 Carpinus fangiana HOM05D002637 ORTHO05D008095 7.0e-32 142.1 257 38.1
ATR0626G238 Amborella trichopoda HOM05D004124 ORTHO05D004779 9.1e-32 141.7 263 38.8
Ca_16453_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 9.1e-32 141.7 245 38.4
Lj6A827G48 Lonicera japonica HOM05D004124 ORTHO05D004779 1.2e-31 141.4 226 39.8
Lalb_Chr13g0294351 Lupinus albus HOM05D004124 ORTHO05D004779 1.2e-31 141.4 249 39.0
GSVIVG01018266001 Vitis vinifera HOM05D004124 ORTHO05D004779 2.6e-31 140.2 201 42.3
Ciclev10033913m.g Citrus clementina HOM05D004124 ORTHO05D004779 3.5e-31 139.8 264 39.0
Sed0002251 Sechium edule HOM05D004124 ORTHO05D004779 3.5e-31 139.8 238 39.9
C06p38790 Brassica napus HOM05D004124 ORTHO05D004779 4.5e-31 139.4 244 41.4
BraA07t31018Z Brassica rapa HOM05D000660 ORTHO05D000766 4.5e-31 139.4 241 41.5
HanXRQChr17g0569011 Helianthus annuus HOM05D004124 ORTHO05D004779 5.9e-31 139.0 236 40.7
Actinidia08066 Actinidia chinensis HOM05D004124 ORTHO05D004779 7.7e-31 138.7 277 36.5
BolC6t38971H Brassica oleracea HOM05D004124 ORTHO05D004779 1.0e-30 138.3 244 40.2
SGA_v2.0_scaffold391G50628 Striga asiatica HOM05D004124 ORTHO05D004779 1.3e-30 137.9 255 36.9
vmacro01057 Vaccinium macrocarpon HOM05D004124 ORTHO05D004779 1.7e-30 137.5 300 34.0
Ah.03g136110 Amaranthus hybridus HOM05D004124 ORTHO05D004779 2.2e-30 137.1 246 40.2
BraA07t30886Z Brassica rapa HOM05D004124 ORTHO05D004779 2.9e-30 136.7 268 39.2
Aqoxy7G02609 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 6.5e-30 135.6 255 38.0
Sc04g0010190 Simmondsia chinensis HOM05D004124 ORTHO05D004779 1.1e-29 134.8 234 39.7
ClCG11G013590 Citrullus lanatus HOM05D004124 ORTHO05D004779 1.5e-29 134.4 245 38.0
ECA234G0541 Erigeron canadensis HOM05D004124 ORTHO05D004779 1.5e-29 134.4 245 36.3
Eucgr.B03499 Eucalyptus grandis HOM05D004124 ORTHO05D004779 1.5e-29 134.4 245 37.6
DCAR_024098 Daucus carota HOM05D004124 ORTHO05D004779 2.5e-29 133.7 249 37.8
Sed0008103 Sechium edule HOM05D004124 ORTHO05D004779 2.5e-29 133.7 246 37.4
A07p32620 Brassica napus HOM05D004124 ORTHO05D004779 5.5e-29 132.5 268 38.8
Thecc.02G206600 Theobroma cacao HOM05D004124 ORTHO05D004779 1.2e-28 131.3 230 39.6
Lj3A1069T45 Lonicera japonica HOM05D004124 ORTHO05D004779 2.1e-28 130.6 228 37.3
Zm00001eb174550 Zea mays HOM05D004124 ORTHO05D004779 1.8e-27 127.5 265 37.7
unitig_749.g13306 Utricularia gibba HOM05D004124 ORTHO05D004779 3.0e-27 126.7 237 38.4
Lsat_1_v5_gn_4_400 Lactuca sativa HOM05D004124 ORTHO05D004779 5.2e-27 125.9 251 37.5
CDE04G3109 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 3.4e-26 123.2 235 37.9
Oeu049141.1 Olea europaea HOM05D004124 ORTHO05D004779 3.4e-26 123.2 217 38.7
Zm00001eb105300 Zea mays HOM05D004124 ORTHO05D004779 7.5e-26 122.1 236 38.1
Os07g0490600 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 1.7e-25 120.9 233 36.1
Manes.13G011200 Manihot esculenta HOM05D004124 ORTHO05D004779 8.3e-25 118.6 245 36.3
Os08g0521400 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 5.4e-24 115.9 268 36.2
Zm00001eb035500 Zea mays HOM05D004124 ORTHO05D004779 1.6e-23 114.4 253 36.0
QL04p030567 Quercus lobata HOM05D004124 ORTHO05D004779 5.0e-22 109.4 182 42.3
CANSAT21G0875 Cannabis sativa HOM05D004124 ORTHO05D004779 1.4e-19 101.3 176 40.9
PSO063G6881 Papaver somniferum HOM05D004124 ORTHO05D004779 4.4e-18 96.3 196 38.8
ATR0057G076 Amborella trichopoda HOM05D004124 ORTHO05D004779 2.8e-17 93.6 167 38.9
CSS0002767 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 2.8e-17 93.6 200 34.5
Nitab4.5_0003900g0010 Nicotiana tabacum HOM05D004124 ORTHO05D004779 2.8e-17 93.6 177 39.0
Glyma.09G242400 Glycine max HOM05D004124 ORTHO05D004779 6.3e-17 92.4 192 37.0
VMungo1383G0643 Vigna mungo HOM05D004124 ORTHO05D004779 2.0e-15 87.4 192 35.9
Zm00001eb321720 Zea mays HOM05D004124 ORTHO05D004779 2.7e-15 87.0 172 37.2
CiPaw.05G108900 Carya illinoinensis HOM05D004124 ORTHO05D004779 3.8e-14 83.2 200 34.0
CSS0020706 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 6.6e-14 82.4 167 35.9
Psat7g021520 Pisum sativum HOM05D004124 ORTHO05D004779 1.2e-12 78.2 256 27.3
BcaNung07398 Brassica carinata HOM05D004124 ORTHO05D004779 6.1e-12 75.9 52 65.4
SMO181G0003 Selaginella moellendorffii HOM05D004124 ORTHO05D004779 8.9e-11 72.0 38 81.6
Cpa.g.sc43.62 Carica papaya HOM05D004124 ORTHO05D004779 1.2e-10 71.6 49 63.3
Lj6A827G49 Lonicera japonica HOM05D022640 ORTHO05D028383 1.2e-10 71.6 38 71.1
PGR083G1960 Punica granatum HOM05D000500 ORTHO05D000367 5.7e-10 69.3 61 50.8
Haze_02835 Corylus avellana HOM05D004124 ORTHO05D004779 7.5e-10 68.9 48 60.4
QL04p030562 Quercus lobata HOM05D004124 ORTHO05D000004 9.8e-10 68.6 52 57.7
Lsat_1_v5_gn_5_94821 Lactuca sativa HOM05D004124 ORTHO05D004779 2.2e-09 67.4 194 30.9
PGR083G0898 Punica granatum HOM05D004124 ORTHO05D004779 2.9e-09 67.0 146 32.9
CSS0005395 Camellia sinensis var. sinensis HOM05D022640 ORTHO05D028383 3.7e-09 66.6 37 67.6
HanXRQChr08g0221261 Helianthus annuus HOM05D004124 ORTHO05D004779 6.3e-09 65.9 141 36.2
Actinidia20714 Actinidia chinensis HOM05D004124 ORTHO05D004779 8.3e-09 65.5 48 60.4
HanXRQChr12g0379451 Helianthus annuus HOM05D004124 ORTHO05D004779 8.3e-09 65.5 30 83.3
Duzib268G1736 Durio zibethinus HOM05D004124 ORTHO05D004779 1.8e-08 64.3 33 72.7
CSS0000371 Camellia sinensis var. sinensis HOM05D022640 ORTHO05D028383 3.2e-08 63.5 38 65.8
CSS0024562 Camellia sinensis var. sinensis HOM05D022640 ORTHO05D028383 5.4e-08 62.8 35 65.7
Oeu006524.1 Olea europaea HOM05D004124 ORTHO05D004779 1.6e-07 61.2 34 67.6
HPP92_015269 Vanilla planifolia HOM05D004124 ORTHO05D004779 1.6e-07 61.2 39 61.5
Eucgr.L03169 Eucalyptus grandis HOM05D004124 ORTHO05D004779 3.5e-07 60.1 175 27.4


User provided reference genes

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