Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c4_7760 Physcomitrium patens HOM05D006847 ORTHO05D008685 1.1e-259 899.4 447 100.0
Pp3c3_23290 Physcomitrium patens HOM05D006847 ORTHO05D008685 2.4e-166 589.3 459 66.2
Pp3c6_17060 Physcomitrium patens HOM05D006847 ORTHO05D008685 1.9e-110 403.7 444 48.2
Pp3c5_12950 Physcomitrium patens HOM05D006847 ORTHO05D008685 1.0e-108 397.9 442 48.2
Mapoly0024s0128 Marchantia polymorpha HOM05D006847 ORTHO05D008685 4.0e-105 386.0 446 47.5
MBI14_g08222_MAGBIO Magnolia biondii HOM05D006847 ORTHO05D008685 4.9e-103 379.0 444 44.8
Pp3c27_4530 Physcomitrium patens HOM05D006847 ORTHO05D008685 3.2e-102 376.3 443 44.9
ATR0691G250 Amborella trichopoda HOM05D006847 ORTHO05D008685 5.1e-100 369.0 442 43.2
Dinv33999 Davidia involucrata HOM05D006847 ORTHO05D008685 2.5e-99 366.7 444 42.8
Aqoxy3G00572 Aquilegia oxysepala HOM05D006847 ORTHO05D008685 3.3e-99 366.3 443 43.8
Lj3C1026T6 Lonicera japonica HOM05D006847 ORTHO05D008685 3.3e-99 366.3 441 42.0
Eucgr.G02408 Eucalyptus grandis HOM05D006847 ORTHO05D008685 7.4e-99 365.2 449 44.8
AagrBONN_evm.TU.Sc2ySwM_368.2780 Anthoceros agrestis HOM05D006847 ORTHO05D008685 1.3e-98 364.4 438 44.5
ECA233G1196 Erigeron canadensis HOM05D006847 ORTHO05D008685 2.8e-98 363.2 443 43.6
MD13G1054900 Malus domestica HOM05D006847 ORTHO05D008685 3.7e-98 362.8 446 43.3
Manes.14G092000 Manihot esculenta HOM05D006847 ORTHO05D008685 4.8e-98 362.5 438 43.8
Cfa008830 Carpinus fangiana HOM05D006847 ORTHO05D008685 6.3e-98 362.1 441 44.0
Lj6C772T8 Lonicera japonica HOM05D006847 ORTHO05D008685 6.3e-98 362.1 443 43.1
HanXRQChr08g0215061 Helianthus annuus HOM05D006847 ORTHO05D008685 8.2e-98 361.7 444 42.8
GSVIVG01010124001 Vitis vinifera HOM05D006847 ORTHO05D008685 8.2e-98 361.7 443 43.3
SalBow2G2641 Salvia bowleyana HOM05D006847 ORTHO05D008685 1.1e-97 361.3 441 43.5
Cc11_g11380 Coffea canephora HOM05D006847 ORTHO05D008685 1.8e-97 360.5 444 43.5
Ciclev10031661m.g Citrus clementina HOM05D006847 ORTHO05D008685 3.1e-97 359.8 442 42.1
TPR.G20006 Trifolium pratense HOM05D006847 ORTHO05D008685 3.1e-97 359.8 440 43.0
Atru.chr11.1527 Acer truncatum HOM05D006847 ORTHO05D008685 4.1e-97 359.4 445 44.0
CAN.G869.31 Capsicum annuum HOM05D006847 ORTHO05D008685 4.1e-97 359.4 443 43.1
PGR119G0337 Punica granatum HOM05D006847 ORTHO05D008685 5.3e-97 359.0 446 43.5
Glyma.02G124600 Glycine max HOM05D006847 ORTHO05D008685 6.9e-97 358.6 445 43.4
Lsat_1_v5_gn_8_36700 Lactuca sativa HOM05D006847 ORTHO05D008685 6.9e-97 358.6 444 42.6
Potri.008G113000 Populus trichocarpa HOM05D006847 ORTHO05D008685 6.9e-97 358.6 445 43.8
Haze_11844 Corylus avellana HOM05D006847 ORTHO05D008685 1.2e-96 357.8 443 43.8
COL.COLO4_27774 Corchorus olitorius HOM05D006847 ORTHO05D008685 1.5e-96 357.5 439 43.7
Nitab4.5_0000259g0050 Nicotiana tabacum HOM05D006847 ORTHO05D008685 1.5e-96 357.5 447 43.2
Aqoxy3G03766 Aquilegia oxysepala HOM05D006847 ORTHO05D008685 2.6e-96 356.7 436 42.7
Sed0007808 Sechium edule HOM05D006847 ORTHO05D008685 2.6e-96 356.7 442 43.4
Actinidia24040 Actinidia chinensis HOM05D006847 ORTHO05D008685 5.9e-96 355.5 442 43.0
Sopen05g006440 Solanum pennellii HOM05D006847 ORTHO05D008685 7.7e-96 355.1 445 42.2
CiPaw.06G095800 Carya illinoinensis HOM05D006847 ORTHO05D008685 1.0e-95 354.8 438 43.6
PGSC0003DMG400019650 Solanum tuberosum HOM05D006847 ORTHO05D008685 1.7e-95 354.0 446 43.5
TAR622G1172 Trochodendron aralioides HOM05D006847 ORTHO05D008685 1.7e-95 354.0 444 42.3
DCAR_023729 Daucus carota HOM05D006847 ORTHO05D008685 2.2e-95 353.6 438 44.1
Nitab4.5_0002309g0040 Nicotiana tabacum HOM05D006847 ORTHO05D008685 2.2e-95 353.6 447 43.0
Thecc.02G320200 Theobroma cacao HOM05D006847 ORTHO05D008685 2.9e-95 353.2 442 43.0
MSTRG.7721 Avicennia marina HOM05D006847 ORTHO05D008685 6.5e-95 352.1 441 42.6
HPP92_020537 Vanilla planifolia HOM05D006847 ORTHO05D008685 6.5e-95 352.1 449 43.2
Gorai.005G148200 Gossypium raimondii HOM05D006847 ORTHO05D008685 8.5e-95 351.7 442 42.3
Gohir.A03G107200 Gossypium hirsutum HOM05D006847 ORTHO05D008685 1.4e-94 350.9 442 42.5
arahy.Tifrunner.gnm1.ann1.B51XMH Arachis hypogaea HOM05D006847 ORTHO05D008685 3.2e-94 349.7 444 43.5
ClCG05G023430 Citrullus lanatus HOM05D006847 ORTHO05D008685 4.2e-94 349.4 442 42.1
Duzib268G0361 Durio zibethinus HOM05D006847 ORTHO05D008685 4.2e-94 349.4 436 43.6
Oeu001640.1 Olea europaea HOM05D006847 ORTHO05D008685 4.2e-94 349.4 442 42.8
MD16G1053800 Malus domestica HOM05D006847 ORTHO05D008685 5.5e-94 349.0 444 41.4
Sopen01g032850 Solanum pennellii HOM05D006847 ORTHO05D008685 5.5e-94 349.0 443 42.0
arahy.Tifrunner.gnm1.ann1.9XA9EY Arachis hypogaea HOM05D006847 ORTHO05D008685 7.2e-94 348.6 444 43.5
CSS0010285 Camellia sinensis var. sinensis HOM05D006847 ORTHO05D008685 9.4e-94 348.2 436 42.2
Lj2g0006896 Lotus japonicus HOM05D006847 ORTHO05D008685 9.4e-94 348.2 445 43.8
CANSAT64G2316 Cannabis sativa HOM05D006847 ORTHO05D008685 1.6e-93 347.4 448 42.9
Ca_22680_v3 Cicer arietinum L. HOM05D006847 ORTHO05D008685 2.1e-93 347.1 442 42.3
Ca_05192_v3 Cicer arietinum L. HOM05D006847 ORTHO05D008685 3.6e-93 346.3 444 43.0
TAR374G0132 Trochodendron aralioides HOM05D006847 ORTHO05D008685 1.0e-92 344.7 443 40.6
PGSC0003DMG400001803 Solanum tuberosum HOM05D006847 ORTHO05D008685 2.3e-92 343.6 443 42.2
Psat4g123400 Pisum sativum HOM05D006847 ORTHO05D008685 3.0e-92 343.2 441 39.2
Migut.L01151 Erythranthe guttata HOM05D006847 ORTHO05D008685 3.9e-92 342.8 441 41.5
Sed0008138 Sechium edule HOM05D006847 ORTHO05D008685 3.9e-92 342.8 443 40.9
Medtr0328s0040 Medicago truncatula HOM05D006847 ORTHO05D008685 1.1e-91 341.3 441 41.7
MELO3C012175.2 Cucumis melo HOM05D006847 ORTHO05D008685 2.5e-91 340.1 444 41.9
Migut.N00803 Erythranthe guttata HOM05D006847 ORTHO05D008685 2.5e-91 340.1 436 40.8
LjContig00408g0014580 Lotus japonicus HOM05D006847 ORTHO05D008685 4.3e-91 339.3 442 40.3
FAN12G2539 Fragaria x ananassa HOM05D006847 ORTHO05D008685 7.4e-91 338.6 466 41.2
Potri.010G136300 Populus trichocarpa HOM05D006847 ORTHO05D008685 1.3e-90 337.8 442 40.5
FAN17G2474 Fragaria x ananassa HOM05D006847 ORTHO05D008685 6.3e-90 335.5 465 41.1
Hma1.2p1_1348F.1_g277280 Hydrangea macrophylla HOM05D006847 ORTHO05D008685 6.3e-90 335.5 437 40.7
CsaV3_5G033580 Cucumis sativus L. HOM05D006847 ORTHO05D008685 1.4e-89 334.3 444 40.8
Oeu021813.1 Olea europaea HOM05D006847 ORTHO05D008685 6.9e-89 332.0 436 41.7
Gohir.D02G132300 Gossypium hirsutum HOM05D006847 ORTHO05D008685 2.9e-87 326.6 442 41.0
TWI75G1304 Tripterygium wilfordii HOM05D006847 ORTHO05D008685 8.5e-87 325.1 442 40.7
FAN22G0943 Fragaria x ananassa HOM05D006847 ORTHO05D008685 1.4e-81 307.8 464 39.0
Medtr8g065720 Medicago truncatula HOM05D006847 ORTHO05D008685 4.1e-81 306.2 442 37.8
HPP92_020469 Vanilla planifolia HOM05D006847 ORTHO05D008685 9.4e-78 295.0 436 38.1
ATR0691G163 Amborella trichopoda HOM05D006847 ORTHO05D008685 2.6e-75 287.0 377 40.6
HPP92_026164 Vanilla planifolia HOM05D006847 ORTHO05D008685 5.3e-73 279.3 417 38.1
Actinidia19898 Actinidia chinensis HOM05D006847 ORTHO05D008685 1.4e-65 254.6 269 46.8
RcHm_v2.0_Chr4g0437071 Rosa chinensis HOM05D006847 ORTHO05D008685 2.4e-65 253.8 366 39.9
Actinidia31921 Actinidia chinensis HOM05D006847 ORTHO05D008685 9.1e-65 251.9 227 51.5
SMO198G0052 Selaginella moellendorffii HOM05D006847 ORTHO05D008685 4.5e-64 249.6 163 67.5
FvH4_4g28930 Fragaria vesca HOM05D006847 ORTHO05D008685 2.8e-53 213.8 337 38.6
Nn4g23575 Nelumbo nucifera HOM05D006847 ORTHO05D008685 2.3e-52 210.7 148 66.2
TPR.G29773 Trifolium pratense HOM05D006847 ORTHO05D008685 1.2e-48 198.4 351 35.0
Psat2g097440 Pisum sativum HOM05D006847 ORTHO05D008685 5.9e-48 196.1 141 62.4
Medtr8g069545 Medicago truncatula HOM05D006847 ORTHO05D008685 2.9e-47 193.7 143 60.8
Cpa.g.c44692 Carica papaya HOM05D006847 ORTHO05D008685 3.3e-46 190.3 137 63.5
SEGI_24845 Sequoiadendron giganteum HOM05D006847 ORTHO05D008685 5.2e-44 183.0 297 36.0
Peaxi162Scf00188g00923 Petunia axillaris HOM05D006847 ORTHO05D008685 2.3e-39 167.5 297 35.7
Pp3c16_11950 Physcomitrium patens HOM05D006847 ORTHO05D008685 4.3e-38 163.3 137 56.2
AagrBONN_evm.TU.Sc2ySwM_117.3731 Anthoceros agrestis HOM05D006847 ORTHO05D008685 3.7e-34 150.2 125 56.0
Psat2g097480 Pisum sativum HOM05D006847 ORTHO05D008685 4.0e-28 130.2 288 30.6
Nn4g23574 Nelumbo nucifera HOM05D006847 ORTHO05D008685 9.9e-27 125.6 117 48.7
CSS0031083 Camellia sinensis var. sinensis HOM05D006847 ORTHO05D008685 7.1e-25 119.4 149 45.0
Solyc05g010630.4 Solanum lycopersicum HOM05D006847 ORTHO05D008685 9.2e-25 119.0 92 55.4
Solyc05g010640.3 Solanum lycopersicum HOM05D006847 ORTHO05D008685 1.0e-23 115.5 108 49.1
CSS0043445 Camellia sinensis var. sinensis HOM05D006847 ORTHO05D000152 1.7e-23 114.8 134 43.3
CSS0029748 Camellia sinensis var. sinensis HOM05D006847 ORTHO05D008685 8.6e-23 112.5 289 30.1
Cre06.g263550 Chlamydomonas reinhardtii HOM05D006847 ORTHO05D008685 7.3e-22 109.4 164 38.4
Sabra10G0104800 Salix brachista HOM05D006847 ORTHO05D008685 5.8e-19 99.8 103 46.6
MCO10G065 Micromonas commoda HOM05D006847 ORTHO05D008685 3.5e-16 90.5 146 42.5
SMO143G0243 Selaginella moellendorffii HOM05D006847 ORTHO05D008685 4.3e-14 83.6 102 42.2
SMO143G0192 Selaginella moellendorffii HOM05D006847 ORTHO05D008685 1.3e-13 82.0 102 41.2
arahy.Tifrunner.gnm1.ann1.JA47JZ Arachis hypogaea HOM05D006847 ORTHO05D008685 2.8e-13 80.9 50 70.0
arahy.Tifrunner.gnm1.ann1.UQ0TL8 Arachis hypogaea HOM05D006847 ORTHO05D008685 1.8e-12 78.2 94 40.4
SMO186G0008 Selaginella moellendorffii HOM05D006847 ORTHO05D008685 4.0e-12 77.0 102 39.2
Manes.08G001700 Manihot esculenta HOM05D007024 ORTHO05D008865 3.4e-11 73.9 173 27.7
AagrBONN_evm.TU.Sc2ySwM_117.3730 Anthoceros agrestis HOM05D006847 ORTHO05D008685 4.4e-11 73.6 95 42.1
AagrBONN_evm.TU.Sc2ySwM_228.4582 Anthoceros agrestis HOM05D016606 ORTHO05D018318 4.4e-11 73.6 179 26.3
Actinidia31922 Actinidia chinensis HOM05D006847 ORTHO05D008685 9.9e-11 72.4 57 56.1
Mapoly0013s0125 Marchantia polymorpha HOM05D016606 ORTHO05D018318 1.7e-10 71.6 175 25.7
SMO265G0021 Selaginella moellendorffii HOM05D006847 ORTHO05D008685 1.7e-10 71.6 102 39.2
CBR_g22374 Chara braunii HOM05D016606 ORTHO05D018318 8.4e-10 69.3 149 31.5
vmacro08688 Vaccinium macrocarpon HOM05D007024 ORTHO05D008865 1.4e-09 68.6 169 28.4
Eucgr.K03198 Eucalyptus grandis HOM05D007024 ORTHO05D008865 3.2e-09 67.4 169 27.2
CSS0004845 Camellia sinensis var. sinensis HOM05D007024 ORTHO05D008865 4.2e-09 67.0 169 28.4
Thhalv10017137m.g Eutrema salsugineum HOM05D007024 ORTHO05D008865 4.2e-09 67.0 181 29.3
Medtr7g100540 Medicago truncatula HOM05D007024 ORTHO05D008865 4.2e-09 67.0 164 29.9
Ca_08817_v3 Cicer arietinum L. HOM05D007024 ORTHO05D008865 5.4e-09 66.6 160 26.9
Sp4g19560 Schrenkiella parvula HOM05D007024 ORTHO05D008865 7.1e-09 66.2 181 28.7
TPR.G39424 Trifolium pratense HOM05D007024 ORTHO05D008865 7.1e-09 66.2 164 29.9
Psat3g045960 Pisum sativum HOM05D007024 ORTHO05D008865 9.3e-09 65.9 163 28.8
Lj1g0023744 Lotus japonicus HOM05D007024 ORTHO05D008865 1.2e-08 65.5 164 28.7
CARHR132350 Cardamine hirsuta HOM05D007024 ORTHO05D008865 1.6e-08 65.1 186 26.3
Glyma.19G177600 Glycine max HOM05D007024 ORTHO05D008865 2.1e-08 64.7 163 28.2
VMungo1383G1891 Vigna mungo HOM05D007024 ORTHO05D008865 2.1e-08 64.7 165 27.9
Phvul.001G173900 Phaseolus vulgaris HOM05D007024 ORTHO05D008865 3.5e-08 63.9 163 28.2
C04p10750 Brassica napus HOM05D007024 ORTHO05D008865 4.6e-08 63.5 181 27.6
BolC4t22670H Brassica oleracea HOM05D007024 ORTHO05D008865 4.6e-08 63.5 181 27.6
Sabra10G0104900 Salix brachista HOM05D006847 ORTHO05D008685 4.6e-08 63.5 101 34.7
BcaB02g09297 Brassica carinata HOM05D007024 ORTHO05D008865 6.0e-08 63.2 181 27.1
THA.LOC104805324 Tarenaya hassleriana HOM05D007024 ORTHO05D008865 6.0e-08 63.2 169 27.2
BcaC02g11844 Brassica carinata HOM05D007024 ORTHO05D008865 7.9e-08 62.8 164 28.0
BraA05t19834Z Brassica rapa HOM05D007024 ORTHO05D008865 7.9e-08 62.8 164 28.0
Potri.006G133100 Populus trichocarpa HOM05D007024 ORTHO05D008865 7.9e-08 62.8 161 26.7
Aa31LG5G22570 Aethionema arabicum HOM05D007024 ORTHO05D008865 1.0e-07 62.4 186 25.8
Carub.0004s1915 Capsella rubella HOM05D007024 ORTHO05D008865 1.0e-07 62.4 171 28.7
CiPaw.09G183100 Carya illinoinensis HOM05D007024 ORTHO05D008865 1.0e-07 62.4 163 28.8
Os03g0284600 Oryza sativa ssp. japonica HOM05D007024 ORTHO05D008865 1.0e-07 62.4 244 24.2
Actinidia05279 Actinidia chinensis HOM05D007024 ORTHO05D008865 1.3e-07 62.0 167 26.9
AL4G33620 Arabidopsis lyrata HOM05D007024 ORTHO05D008865 1.3e-07 62.0 170 27.6
AT2G37240 Arabidopsis thaliana HOM05D007024 ORTHO05D008865 1.3e-07 62.0 187 27.3
PGR004G2860 Punica granatum HOM05D007024 ORTHO05D008865 1.3e-07 62.0 163 28.2
A05p08660 Brassica napus HOM05D007024 ORTHO05D008865 1.7e-07 61.6 164 27.4
Ciclev10013683m.g Citrus clementina HOM05D007024 ORTHO05D008865 1.7e-07 61.6 163 27.0
Lsat_1_v5_gn_2_109921 Lactuca sativa HOM05D007024 ORTHO05D008865 1.7e-07 61.6 163 26.4
QL07p045588 Quercus lobata HOM05D007024 ORTHO05D008865 1.7e-07 61.6 163 28.2
Sabra06G0104600 Salix brachista HOM05D007024 ORTHO05D008865 2.3e-07 61.2 163 27.0
arahy.Tifrunner.gnm1.ann1.4131RS Arachis hypogaea HOM05D007024 ORTHO05D008865 3.0e-07 60.8 163 27.0
CsaV3_4G024400 Cucumis sativus L. HOM05D007024 ORTHO05D008865 3.9e-07 60.5 171 27.5
Solyc01g081280.3 Solanum lycopersicum HOM05D006847 ORTHO05D008685 5.1e-07 60.1 51 49.0
MBI18_g34970_MAGBIO Magnolia biondii HOM05D007024 ORTHO05D008865 8.7e-07 59.3 169 25.4
ECA238G1489 Erigeron canadensis HOM05D007024 ORTHO05D008865 1.5e-06 58.5 163 26.4
Dinv35695 Davidia involucrata HOM05D001458 ORTHO05D006787 1.9e-06 58.2 276 22.8
Migut.L01652 Erythranthe guttata HOM05D007024 ORTHO05D008865 1.9e-06 58.2 174 27.0
MD12G1128400 Malus domestica HOM05D007024 ORTHO05D008865 1.9e-06 58.2 175 28.0
Nn2g10613 Nelumbo nucifera HOM05D007024 ORTHO05D008865 1.9e-06 58.2 180 26.1
Atru.chr8.2534 Acer truncatum HOM05D007024 ORTHO05D008865 2.5e-06 57.8 169 25.4
AagrBONN_evm.TU.Sc2ySwM_368.978 Anthoceros agrestis HOM05D016606 ORTHO05D018318 7.3e-06 56.2 176 26.1
AagrBONN_evm.TU.Sc2ySwM_368.1530 Anthoceros agrestis HOM05D004917 ORTHO05D005954 9.6e-06 55.8 177 28.8


User provided reference genes

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