Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c4_7580 Physcomitrium patens HOM05D004210 ORTHO05D005017 6.4e-221 770.4 376 100.0
Pp3c12_14420 Physcomitrium patens HOM05D004210 ORTHO05D005017 1.2e-102 377.5 379 58.0
Mapoly0028s0049 Marchantia polymorpha HOM05D004210 ORTHO05D005017 3.0e-77 293.1 381 45.9
AagrBONN_evm.TU.Sc2ySwM_344.4521 Anthoceros agrestis HOM05D004210 ORTHO05D005017 8.5e-64 248.4 357 40.9
SMO145G0186 Selaginella moellendorffii HOM05D004210 ORTHO05D005017 9.1e-58 228.4 362 39.8
GSVIVG01018295001 Vitis vinifera HOM05D004210 ORTHO05D005017 1.6e-54 217.6 382 36.1
CiPaw.14G037100 Carya illinoinensis HOM05D004210 ORTHO05D005017 3.6e-54 216.5 373 37.5
Nn5g30473 Nelumbo nucifera HOM05D004210 ORTHO05D005017 1.0e-53 214.9 406 36.9
AagrBONN_evm.TU.Sc2ySwM_368.940 Anthoceros agrestis HOM05D004210 ORTHO05D005017 6.7e-53 212.2 375 34.7
Aqoxy1G00569 Aquilegia oxysepala HOM05D004210 ORTHO05D005017 8.8e-53 211.8 406 35.2
Dinv04121 Davidia involucrata HOM05D004210 ORTHO05D005017 1.5e-52 211.1 407 35.4
Actinidia18370 Actinidia chinensis HOM05D004210 ORTHO05D005017 2.0e-52 210.7 412 36.2
MELO3C012312.2 Cucumis melo HOM05D004210 ORTHO05D005017 4.4e-52 209.5 378 36.5
Sp3g19020 Schrenkiella parvula HOM05D004210 ORTHO05D005017 7.5e-52 208.8 387 37.2
Carub.0003s2096 Capsella rubella HOM05D004210 ORTHO05D005017 9.7e-52 208.4 389 36.8
HPP92_001742 Vanilla planifolia HOM05D004210 ORTHO05D005017 9.7e-52 208.4 413 34.9
TAR376G0596 Trochodendron aralioides HOM05D004210 ORTHO05D005017 1.3e-51 208.0 394 37.1
Aa31LG8G7780 Aethionema arabicum HOM05D004210 ORTHO05D005017 2.8e-51 206.8 381 36.7
Nitab4.5_0001611g0030 Nicotiana tabacum HOM05D004210 ORTHO05D005017 2.8e-51 206.8 374 37.2
Rhsim04G0193600 Rhododendron simsii HOM05D004210 ORTHO05D005017 2.8e-51 206.8 382 37.4
CsaV3_5G035020 Cucumis sativus L. HOM05D004210 ORTHO05D005017 4.8e-51 206.1 378 36.0
PSO478G0462 Papaver somniferum HOM05D004210 ORTHO05D005017 8.2e-51 205.3 396 37.9
Sc18g0006930 Simmondsia chinensis HOM05D004210 ORTHO05D005017 8.2e-51 205.3 364 36.8
AT3G21060 Arabidopsis thaliana HOM05D004210 ORTHO05D005017 1.1e-50 204.9 386 36.0
arahy.Tifrunner.gnm1.ann1.374KBL Arachis hypogaea HOM05D004210 ORTHO05D005017 1.1e-50 204.9 387 35.7
Sed0005167 Sechium edule HOM05D004210 ORTHO05D005017 1.1e-50 204.9 391 35.5
CDE04G1921 Ceratophyllum demersum HOM05D004210 ORTHO05D005017 1.4e-50 204.5 385 37.7
ClCG05G022120 Citrullus lanatus HOM05D004210 ORTHO05D005017 1.4e-50 204.5 379 36.4
Lsat_1_v5_gn_4_138820 Lactuca sativa HOM05D004210 ORTHO05D005017 1.4e-50 204.5 395 36.2
Haze_03415 Corylus avellana HOM05D004210 ORTHO05D005017 1.8e-50 204.1 394 35.8
ATR0661G188 Amborella trichopoda HOM05D004210 ORTHO05D005017 3.1e-50 203.4 375 36.3
arahy.Tifrunner.gnm1.ann1.3JDG4T Arachis hypogaea HOM05D004210 ORTHO05D005017 3.1e-50 203.4 387 35.7
vmacro20845 Vaccinium macrocarpon HOM05D004210 ORTHO05D005017 3.1e-50 203.4 384 35.9
Lj8A287G21 Lonicera japonica HOM05D004210 ORTHO05D005017 5.3e-50 202.6 377 35.8
ECA248G0690 Erigeron canadensis HOM05D004210 ORTHO05D005017 7.0e-50 202.2 367 36.5
TAR625G1450 Trochodendron aralioides HOM05D004210 ORTHO05D005017 7.0e-50 202.2 410 33.7
CDE07G1685 Ceratophyllum demersum HOM05D004210 ORTHO05D005017 9.1e-50 201.8 395 37.5
Medtr8g041740 Medicago truncatula HOM05D004210 ORTHO05D005017 9.1e-50 201.8 379 36.9
PSO541G0139 Papaver somniferum HOM05D004210 ORTHO05D005017 9.1e-50 201.8 369 38.2
Sed0024731 Sechium edule HOM05D004210 ORTHO05D005017 9.1e-50 201.8 376 36.2
A01p33790 Brassica napus HOM05D004210 ORTHO05D005017 1.2e-49 201.4 371 37.5
BraA01t03490Z Brassica rapa HOM05D004210 ORTHO05D005017 1.2e-49 201.4 371 37.5
arahy.Tifrunner.gnm1.ann1.A6SQAT Arachis hypogaea HOM05D004210 ORTHO05D005017 1.6e-49 201.1 387 35.1
Glyma.06G315900 Glycine max HOM05D004210 ORTHO05D005017 1.6e-49 201.1 384 35.4
CANSAT56G1750 Cannabis sativa HOM05D004210 ORTHO05D005017 2.0e-49 200.7 399 34.1
Eucgr.G02654 Eucalyptus grandis HOM05D004210 ORTHO05D005017 2.0e-49 200.7 396 34.8
TPR.G14605 Trifolium pratense HOM05D004210 ORTHO05D005017 2.7e-49 200.3 356 36.5
Glyma.13G124200 Glycine max HOM05D004210 ORTHO05D005017 3.5e-49 199.9 384 34.9
MSTRG.20468 Avicennia marina HOM05D004210 ORTHO05D005017 4.5e-49 199.5 353 38.0
Nitab4.5_0004014g0070 Nicotiana tabacum HOM05D004210 ORTHO05D005017 4.5e-49 199.5 374 36.1
BolC1t04267H Brassica oleracea HOM05D004210 ORTHO05D005017 5.9e-49 199.1 368 39.1
Lalb_Chr18g0049111 Lupinus albus HOM05D004210 ORTHO05D005017 5.9e-49 199.1 388 34.8
Cc08_g06030 Coffea canephora HOM05D004210 ORTHO05D005017 7.7e-49 198.7 385 35.1
Migut.B01123 Erythranthe guttata HOM05D004210 ORTHO05D005017 7.7e-49 198.7 400 34.8
Oeu027040.1 Olea europaea HOM05D004210 ORTHO05D005017 7.7e-49 198.7 322 37.0
Solyc01g096950.4 Solanum lycopersicum HOM05D004210 ORTHO05D005017 7.7e-49 198.7 365 37.5
Cpa.g.sc138.49 Carica papaya HOM05D004210 ORTHO05D005017 1.0e-48 198.4 382 35.1
Glyma.05G087400 Glycine max HOM05D004210 ORTHO05D005017 1.0e-48 198.4 395 34.7
CARHR096890 Cardamine hirsuta HOM05D004210 ORTHO05D005017 1.3e-48 198.0 396 35.9
DCAR_002139 Daucus carota HOM05D004210 ORTHO05D005017 1.3e-48 198.0 362 35.4
Thhalv10020461m.g Eutrema salsugineum HOM05D004210 ORTHO05D005017 1.3e-48 198.0 370 36.2
Oeu012473.1 Olea europaea HOM05D004210 ORTHO05D005017 2.2e-48 197.2 378 34.9
C01p43210 Brassica napus HOM05D004210 ORTHO05D005017 2.9e-48 196.8 368 37.5
CBR_g10843 Chara braunii HOM05D004210 ORTHO05D005017 2.9e-48 196.8 343 37.0
BcaC09g49045 Brassica carinata HOM05D004210 ORTHO05D005017 3.8e-48 196.4 368 37.5
Manes.13G078700 Manihot esculenta HOM05D004210 ORTHO05D005017 3.8e-48 196.4 390 34.9
Phvul.008G161500 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 3.8e-48 196.4 403 34.7
HanXRQChr09g0259631 Helianthus annuus HOM05D004210 ORTHO05D005017 5.0e-48 196.1 363 35.8
Psat4g180480 Pisum sativum HOM05D004210 ORTHO05D005017 5.0e-48 196.1 386 35.2
Atru.chr10.436 Acer truncatum HOM05D004210 ORTHO05D005017 6.5e-48 195.7 386 35.2
FAN27G0821 Fragaria x ananassa HOM05D004210 ORTHO05D005017 1.5e-47 194.5 356 35.4
Peaxi162Scf00647g00139 Petunia axillaris HOM05D004210 ORTHO05D005017 1.5e-47 194.5 286 40.9
Glyma.08G229800 Glycine max HOM05D004210 ORTHO05D005017 1.9e-47 194.1 396 33.3
QL04p049870 Quercus lobata HOM05D004210 ORTHO05D005017 1.9e-47 194.1 354 37.6
Sabra19G0013500 Salix brachista HOM05D004210 ORTHO05D005017 1.9e-47 194.1 376 35.9
Sopen01g040660 Solanum pennellii HOM05D004210 ORTHO05D005017 1.9e-47 194.1 366 36.9
PGSC0003DMG400027522 Solanum tuberosum HOM05D004210 ORTHO05D005017 1.9e-47 194.1 366 36.3
Ca_24139_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 2.5e-47 193.7 470 31.3
Lj3g0025560 Lotus japonicus HOM05D004210 ORTHO05D005017 2.5e-47 193.7 391 34.3
Potri.019G000900 Populus trichocarpa HOM05D004210 ORTHO05D005017 2.5e-47 193.7 376 35.9
Sabra19G0014200 Salix brachista HOM05D004210 ORTHO05D005017 2.5e-47 193.7 376 35.9
Medtr8g045440 Medicago truncatula HOM05D004210 ORTHO05D005017 3.2e-47 193.4 382 36.4
BcaB04g20615 Brassica carinata HOM05D004210 ORTHO05D005017 4.2e-47 193.0 368 37.5
Prupe.5G058900 Prunus persica HOM05D004210 ORTHO05D005017 4.2e-47 193.0 357 35.3
PGR142G1915 Punica granatum HOM05D004210 ORTHO05D005017 4.2e-47 193.0 426 33.3
Ca_05576_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 5.5e-47 192.6 359 34.5
Sabra19G0005800 Salix brachista HOM05D004210 ORTHO05D005017 5.5e-47 192.6 376 35.6
Hund00055 Selenicereus undatus HOM05D004210 ORTHO05D005017 5.5e-47 192.6 389 33.9
FAN15G0031 Fragaria x ananassa HOM05D004210 ORTHO05D005017 7.2e-47 192.2 351 35.3
Hund06390 Selenicereus undatus HOM05D004210 ORTHO05D005017 7.2e-47 192.2 368 34.8
FvH4_2g10510 Fragaria vesca HOM05D004210 ORTHO05D005017 9.4e-47 191.8 351 35.3
FAN24G2713 Fragaria x ananassa HOM05D004210 ORTHO05D005017 9.4e-47 191.8 351 35.3
THA.LOC104804661 Tarenaya hassleriana HOM05D004210 ORTHO05D005017 9.4e-47 191.8 376 36.2
Sabra19G0006000 Salix brachista HOM05D004210 ORTHO05D005017 1.2e-46 191.4 376 35.6
TAR381G0930 Trochodendron aralioides HOM05D004210 ORTHO05D005017 1.6e-46 191.0 311 37.9
Hma1.2p1_0892F.1_g233380 Hydrangea macrophylla HOM05D004210 ORTHO05D005017 2.1e-46 190.7 399 34.8
EL10Ac7g18124 Beta vulgaris HOM05D004210 ORTHO05D005017 2.7e-46 190.3 361 34.6
FAN20G0431 Fragaria x ananassa HOM05D004210 ORTHO05D005017 2.7e-46 190.3 351 35.0
MD02G1259400 Malus domestica HOM05D004210 ORTHO05D005017 2.7e-46 190.3 281 39.9
Psat4g200760 Pisum sativum HOM05D004210 ORTHO05D005017 2.7e-46 190.3 373 34.3
VMungo0647G0038 Vigna mungo HOM05D004210 ORTHO05D005017 2.7e-46 190.3 401 34.2
Ciclev10014800m.g Citrus clementina HOM05D004210 ORTHO05D005017 4.7e-46 189.5 373 34.9
Gohir.A13G003500 Gossypium hirsutum HOM05D004210 ORTHO05D005017 4.7e-46 189.5 379 34.8
Gorai.013G003300 Gossypium raimondii HOM05D004210 ORTHO05D005017 4.7e-46 189.5 384 35.9
MD07G1061200 Malus domestica HOM05D004210 ORTHO05D005017 4.7e-46 189.5 285 40.0
Sabra16G0191800 Salix brachista HOM05D004210 ORTHO05D005017 4.7e-46 189.5 378 35.7
TPR.G24022 Trifolium pratense HOM05D004210 ORTHO05D005017 4.7e-46 189.5 351 34.8
Gohir.D13G003400 Gossypium hirsutum HOM05D004210 ORTHO05D005017 6.1e-46 189.1 385 36.6
Phvul.003G276000 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 6.1e-46 189.1 359 34.8
Glyma.04G129500 Glycine max HOM05D004210 ORTHO05D005017 8.0e-46 188.7 284 38.7
RcHm_v2.0_Chr6g0268021 Rosa chinensis HOM05D004210 ORTHO05D005017 1.0e-45 188.3 353 35.1
SalBow4G0418 Salvia bowleyana HOM05D004210 ORTHO05D005017 1.0e-45 188.3 279 39.4
VMungo0251G3202 Vigna mungo HOM05D004210 ORTHO05D005017 1.4e-45 188.0 373 33.2
Thecc.10G122400 Theobroma cacao HOM05D004210 ORTHO05D005017 1.8e-45 187.6 381 34.6
Lalb_Chr01g0007661 Lupinus albus HOM05D004210 ORTHO05D005017 3.0e-45 186.8 370 35.9
Potri.001G305500 Populus trichocarpa HOM05D004210 ORTHO05D005017 3.0e-45 186.8 375 34.9
Duzib114G0085 Durio zibethinus HOM05D004210 ORTHO05D005017 1.2e-44 184.9 381 35.7
COL.COLO4_16323 Corchorus olitorius HOM05D004210 ORTHO05D005017 7.5e-44 182.2 378 35.2
unitig_26.g9497 Utricularia gibba HOM05D004210 ORTHO05D005017 9.8e-44 181.8 281 38.1
Ca_24147_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 2.2e-43 180.6 288 38.2
CSS0018495 Camellia sinensis var. sinensis HOM05D004210 ORTHO05D005017 2.8e-43 180.3 385 35.1
Ca_13103_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 2.8e-43 180.3 366 34.2
ECA238G3001 Erigeron canadensis HOM05D004210 ORTHO05D005017 3.7e-43 179.9 364 35.4
HanXRQChr14g0446551 Helianthus annuus HOM05D004210 ORTHO05D005017 6.3e-43 179.1 275 37.8
Medtr8g045463 Medicago truncatula HOM05D004210 ORTHO05D005017 1.1e-42 178.3 286 38.5
Medtr8g045470 Medicago truncatula HOM05D004210 ORTHO05D005017 1.1e-42 178.3 286 38.5
AUR62001320 Chenopodium quinoa HOM05D004210 ORTHO05D005017 2.4e-42 177.2 364 34.1
Duzib106G1791 Durio zibethinus HOM05D004210 ORTHO05D005017 7.0e-42 175.6 365 34.5
AL249U10010 Arabidopsis lyrata HOM05D004210 ORTHO05D005017 1.6e-41 174.5 242 40.1
Dinv30359 Davidia involucrata HOM05D004210 ORTHO05D005017 1.6e-41 174.5 356 34.6
Psat2g059840 Pisum sativum HOM05D004210 ORTHO05D005017 2.7e-41 173.7 383 32.6
Zm00001eb007220 Zea mays HOM05D004210 ORTHO05D005017 2.7e-41 173.7 367 33.2
AUR62025703 Chenopodium quinoa HOM05D004210 ORTHO05D005017 4.5e-41 172.9 364 33.2
AL3G35010 Arabidopsis lyrata HOM05D004210 ORTHO05D005017 5.9e-41 172.6 516 30.0
Manes.13G077346 Manihot esculenta HOM05D004210 ORTHO05D005017 1.7e-40 171.0 243 39.1
CSS0025743 Camellia sinensis var. sinensis HOM05D004210 ORTHO05D005017 3.8e-40 169.9 267 38.6
SGA_v2.0_scaffold196G40978 Striga asiatica HOM05D004210 ORTHO05D005017 3.2e-39 166.8 263 38.4
Os03g0207900 Oryza sativa ssp. japonica HOM05D004210 ORTHO05D005017 1.6e-38 164.5 365 31.8
Lalb_Chr03g0032281 Lupinus albus HOM05D004210 ORTHO05D005017 1.8e-37 161.0 305 34.4
CBR_g18561 Chara braunii HOM05D004210 ORTHO05D005017 1.1e-34 151.8 438 27.4
SEGI_15684 Sequoiadendron giganteum HOM05D004210 ORTHO05D005017 1.2e-33 148.3 226 38.5
TWI75G1118 Tripterygium wilfordii HOM05D004210 ORTHO05D005017 1.6e-33 147.9 345 32.8
Phvul.011G184500 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 9.2e-26 122.1 270 32.2
MBI16_g14436_MAGBIO Magnolia biondii HOM05D004210 ORTHO05D005017 4.9e-19 99.8 152 37.5
Atru.chr12.1163 Acer truncatum HOM05D004210 ORTHO05D005017 2.4e-18 97.4 72 56.9
Cre03.g195750 Chlamydomonas reinhardtii HOM05D004210 ORTHO05D005017 4.6e-17 93.2 109 36.7
Dinv18720 Davidia involucrata HOM05D004210 ORTHO05D005017 8.6e-16 89.0 113 40.7
Rhsim01G0121500 Rhododendron simsii HOM05D004210 ORTHO05D005017 6.2e-14 82.8 105 41.9
PRCOL_00000885 Prasinoderma coloniale HOM05D004210 ORTHO05D005017 8.1e-14 82.4 132 28.0
SEGI_20000 Sequoiadendron giganteum HOM05D004210 ORTHO05D005017 1.2e-12 78.6 168 36.3
Dinv18710 Davidia involucrata HOM05D004210 ORTHO05D005017 1.7e-11 74.7 243 28.8
Dinv18721 Davidia involucrata HOM05D004210 ORTHO05D005017 3.6e-06 57.0 54 51.9


User provided reference genes

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