Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c4_6840 Physcomitrium patens HOM05D006956 ORTHO05D008824 1.1e-115 419.9 203 100.0
Pp3c4_6830 Physcomitrium patens HOM05D006956 ORTHO05D008824 1.5e-70 270.0 203 64.5
AagrBONN_evm.TU.Sc2ySwM_368.712 Anthoceros agrestis HOM05D006956 ORTHO05D008824 2.8e-45 186.0 185 47.6
SMO340G0149 Selaginella moellendorffii HOM05D006956 ORTHO05D008824 2.9e-42 176.0 184 45.1
AL1G28750 Arabidopsis lyrata HOM05D006956 ORTHO05D008824 3.5e-40 169.1 191 42.9
Dinv19614 Davidia involucrata HOM05D006956 ORTHO05D008824 4.6e-40 168.7 197 42.1
Aqoxy1G01495 Aquilegia oxysepala HOM05D006956 ORTHO05D008824 6.0e-40 168.3 184 43.5
CDE05G1956 Ceratophyllum demersum HOM05D003342 ORTHO05D003861 1.0e-39 167.5 194 42.3
CsaV3_6G013760 Cucumis sativus L. HOM05D006956 ORTHO05D008824 1.3e-39 167.2 194 41.2
BraA09t41455Z Brassica rapa HOM05D006956 ORTHO05D008824 2.3e-39 166.4 186 41.4
A09p60820 Brassica napus HOM05D006956 ORTHO05D008824 3.0e-39 166.0 186 41.4
MELO3C019670.2 Cucumis melo HOM05D006956 ORTHO05D008824 3.0e-39 166.0 198 39.9
Nn7g38051 Nelumbo nucifera HOM05D006956 ORTHO05D008824 3.0e-39 166.0 197 41.1
Gohir.A11G291500 Gossypium hirsutum HOM05D006956 ORTHO05D008824 3.9e-39 165.6 188 42.6
Gorai.007G335600 Gossypium raimondii HOM05D006956 ORTHO05D008824 5.1e-39 165.2 187 43.3
TAR362G0399 Trochodendron aralioides HOM05D006956 ORTHO05D008824 5.1e-39 165.2 187 41.7
C08p44410 Brassica napus HOM05D006956 ORTHO05D008824 1.1e-38 164.1 186 40.9
AT1G16590 Arabidopsis thaliana HOM05D006956 ORTHO05D008824 1.5e-38 163.7 192 40.6
BolC8t51982H Brassica oleracea HOM05D006956 ORTHO05D008824 2.5e-38 162.9 186 40.9
CAN.G710.39 Capsicum annuum HOM05D006956 ORTHO05D008824 2.5e-38 162.9 194 41.2
Solyc09g098220.3 Solanum lycopersicum HOM05D006956 ORTHO05D008824 2.5e-38 162.9 193 40.4
Sopen09g036160 Solanum pennellii HOM05D006956 ORTHO05D008824 2.5e-38 162.9 193 40.4
TWI39G0297 Tripterygium wilfordii HOM05D006956 ORTHO05D008824 3.3e-38 162.5 193 43.0
CiPaw.11G066300 Carya illinoinensis HOM05D006956 ORTHO05D008824 4.3e-38 162.2 186 42.5
Potri.001G439000 Populus trichocarpa HOM05D006956 ORTHO05D008824 7.4e-38 161.4 194 40.7
QL04p076576 Quercus lobata HOM05D006956 ORTHO05D008824 9.6e-38 161.0 193 42.0
COL.COLO4_07377 Corchorus olitorius HOM05D006956 ORTHO05D008824 1.3e-37 160.6 187 41.7
Peaxi162Scf00286g00448 Petunia axillaris HOM05D006956 ORTHO05D008824 1.3e-37 160.6 193 39.9
Thhalv10008810m.g Eutrema salsugineum HOM05D006956 ORTHO05D008824 2.1e-37 159.8 186 40.9
Zm00001eb198240 Zea mays HOM05D006956 ORTHO05D008824 2.1e-37 159.8 194 41.8
Cfa010806 Carpinus fangiana HOM05D006956 ORTHO05D008824 3.7e-37 159.1 186 41.9
Phvul.005G057800 Phaseolus vulgaris HOM05D006956 ORTHO05D008824 3.7e-37 159.1 187 41.7
VMungo1080G0523 Vigna mungo HOM05D006956 ORTHO05D008824 3.7e-37 159.1 187 42.2
CSS0020916 Camellia sinensis var. sinensis HOM05D006956 ORTHO05D008824 6.2e-37 158.3 191 41.4
Lj3g0018815 Lotus japonicus HOM05D006956 ORTHO05D008824 6.2e-37 158.3 187 41.2
Prupe.4G139000 Prunus persica HOM05D006956 ORTHO05D008824 1.4e-36 157.1 186 39.8
MSTRG.13068 Avicennia marina HOM05D006956 ORTHO05D008824 1.8e-36 156.8 195 40.0
Haze_03154 Corylus avellana HOM05D006956 ORTHO05D008824 1.8e-36 156.8 187 41.2
CARHR017060 Cardamine hirsuta HOM05D006956 ORTHO05D008824 2.4e-36 156.4 186 39.8
ClCG02G018480 Citrullus lanatus HOM05D006956 ORTHO05D008824 2.4e-36 156.4 212 36.8
Medtr2g069340 Medicago truncatula HOM05D006956 ORTHO05D008824 2.4e-36 156.4 187 40.1
Sabra16G0296900 Salix brachista HOM05D006956 ORTHO05D008824 2.4e-36 156.4 201 39.8
Glyma.15G256600 Glycine max HOM05D006956 ORTHO05D008824 3.1e-36 156.0 184 41.8
TPR.G9744 Trifolium pratense HOM05D006956 ORTHO05D008824 4.0e-36 155.6 187 40.1
MD10G1203100 Malus domestica HOM05D006956 ORTHO05D008824 5.3e-36 155.2 193 38.3
Carub.0001s1634 Capsella rubella HOM05D006956 ORTHO05D008824 6.9e-36 154.8 187 41.2
Ciclev10022296m.g Citrus clementina HOM05D006956 ORTHO05D008824 9.0e-36 154.5 185 42.2
Eucgr.A00498 Eucalyptus grandis HOM05D006956 ORTHO05D008824 1.2e-35 154.1 187 39.0
Thecc.07G151600 Theobroma cacao HOM05D006956 ORTHO05D008824 1.2e-35 154.1 187 40.6
Atru.chr9.1519 Acer truncatum HOM05D006956 ORTHO05D008824 1.5e-35 153.7 187 40.6
Ca_03670_v3 Cicer arietinum L. HOM05D006956 ORTHO05D008824 1.5e-35 153.7 187 40.1
Cc05_g16140 Coffea canephora HOM05D006956 ORTHO05D008824 2.0e-35 153.3 194 39.7
THA.LOC104808124 Tarenaya hassleriana HOM05D006956 ORTHO05D008824 3.4e-35 152.5 186 39.8
Hma1.2p1_0334F.1_g128720 Hydrangea macrophylla HOM05D006956 ORTHO05D008824 4.5e-35 152.1 188 41.0
Manes.06G172400 Manihot esculenta HOM05D006956 ORTHO05D008824 5.8e-35 151.8 198 40.4
Aa31LG7G1120 Aethionema arabicum HOM05D006956 ORTHO05D008824 7.6e-35 151.4 201 38.8
Psat1g012040 Pisum sativum HOM05D006956 ORTHO05D008824 7.6e-35 151.4 187 39.0
PGR142G1185 Punica granatum HOM05D006956 ORTHO05D008824 7.6e-35 151.4 198 39.4
Lj3g0016125 Lotus japonicus HOM05D006956 ORTHO05D008824 1.0e-34 151.0 186 40.9
CANSAT54G1214 Cannabis sativa HOM05D006956 ORTHO05D008824 1.3e-34 150.6 181 40.3
Rhsim04G0005600 Rhododendron simsii HOM05D006956 ORTHO05D008824 1.7e-34 150.2 187 40.1
Mapoly0023s0023 Marchantia polymorpha HOM05D006956 ORTHO05D008824 3.8e-34 149.1 127 52.0
FvH4_3g15651 Fragaria vesca HOM05D006956 ORTHO05D008824 4.9e-34 148.7 191 38.2
Nitab4.5_0001526g0100 Nicotiana tabacum HOM05D006956 ORTHO05D008824 4.9e-34 148.7 212 36.3
arahy.Tifrunner.gnm1.ann1.JC2BA5 Arachis hypogaea HOM05D006956 ORTHO05D008824 6.5e-34 148.3 187 39.0
PSO210G3417 Papaver somniferum HOM05D006956 ORTHO05D008824 8.4e-34 147.9 187 38.0
RcHm_v2.0_Chr5g0026331 Rosa chinensis HOM05D006956 ORTHO05D008824 8.4e-34 147.9 191 37.7
PSO223G0077 Papaver somniferum HOM05D006956 ORTHO05D008824 1.1e-33 147.5 187 38.0
Migut.H01688 Erythranthe guttata HOM05D006956 ORTHO05D008824 1.9e-33 146.7 193 38.3
Lalb_Chr20g0108711 Lupinus albus HOM05D006956 ORTHO05D008824 1.9e-33 146.7 187 40.1
HPP92_011671 Vanilla planifolia HOM05D006956 ORTHO05D008824 2.5e-33 146.4 200 37.0
CSS0000379 Camellia sinensis var. sinensis HOM05D006956 ORTHO05D008824 4.2e-33 145.6 193 39.9
SalBow5G4858 Salvia bowleyana HOM05D006956 ORTHO05D008824 7.1e-33 144.8 186 37.1
vmacro00957 Vaccinium macrocarpon HOM05D006956 ORTHO05D008824 1.2e-32 144.1 181 39.2
FAN21G1707 Fragaria x ananassa HOM05D006956 ORTHO05D008824 2.1e-32 143.3 191 36.6
AUR62026907 Chenopodium quinoa HOM05D006956 ORTHO05D008824 4.6e-32 142.1 188 37.2
AUR62042418 Chenopodium quinoa HOM05D006956 ORTHO05D008824 7.9e-32 141.4 184 37.0
Cfa010808 Carpinus fangiana HOM05D006956 ORTHO05D008824 3.9e-31 139.0 164 40.9
PGSC0003DMG400014067 Solanum tuberosum HOM05D006956 ORTHO05D008466 5.1e-31 138.7 163 41.7
GSVIVG01020406001 Vitis vinifera HOM05D006956 ORTHO05D008824 5.1e-31 138.7 162 40.1
FAN11G3326 Fragaria x ananassa HOM05D006956 ORTHO05D008824 8.7e-31 137.9 208 36.1
arahy.Tifrunner.gnm1.ann1.82TPB7 Arachis hypogaea HOM05D006956 ORTHO05D008824 1.1e-30 137.5 218 34.4
Sed0013658 Sechium edule HOM05D006956 ORTHO05D008824 1.5e-30 137.1 145 42.8
Sp1g14740 Schrenkiella parvula HOM05D006956 ORTHO05D008824 3.3e-30 136.0 192 35.9
MBI18_g45405_MAGBIO Magnolia biondii HOM05D006956 ORTHO05D008824 4.3e-30 135.6 157 43.9
HanXRQChr08g0231891 Helianthus annuus HOM05D006956 ORTHO05D008824 1.0e-26 124.4 181 35.4
SGA_v2.0_scaffold49G18176 Striga asiatica HOM05D006956 ORTHO05D008824 1.3e-26 124.0 187 34.2
ECA247G3084 Erigeron canadensis HOM05D006956 ORTHO05D008824 1.7e-26 123.6 189 36.0
Sc08g0007560 Simmondsia chinensis HOM05D006956 ORTHO05D008824 2.5e-25 119.8 151 39.1
SEGI_37897 Sequoiadendron giganteum HOM05D006956 ORTHO05D008824 3.3e-22 109.4 125 42.4
Prupe.4G141800 Prunus persica HOM05D006956 ORTHO05D008824 3.1e-20 102.8 128 40.6
FAN25G3578 Fragaria x ananassa HOM05D006956 ORTHO05D008824 5.0e-18 95.5 126 36.5
Lsat_1_v5_gn_6_63040 Lactuca sativa HOM05D006956 ORTHO05D008824 3.2e-17 92.8 163 31.9
Actinidia35432 Actinidia chinensis HOM05D006956 ORTHO05D008824 7.2e-17 91.7 135 35.6
Cre13.g575333 Chlamydomonas reinhardtii HOM05D006956 ORTHO05D008824 1.6e-16 90.5 145 35.9
MD17G1180100 Malus domestica HOM05D006956 ORTHO05D008824 3.9e-15 85.9 126 34.1
QL04p076191 Quercus lobata HOM05D006956 ORTHO05D008824 3.9e-15 85.9 126 36.5
QL93p0133_0021 Quercus lobata HOM05D006956 ORTHO05D008824 3.9e-15 85.9 126 36.5
ATR0753G159 Amborella trichopoda HOM05D006956 ORTHO05D008824 7.4e-14 81.6 84 46.4
RcHm_v2.0_Chr5g0026311 Rosa chinensis HOM05D006956 ORTHO05D008824 4.8e-13 79.0 191 27.2
MBI18_g44288_MAGBIO Magnolia biondii HOM05D006956 ORTHO05D008824 1.7e-10 70.5 60 55.0
Lju41A37T48 Lonicera japonica HOM05D006956 ORTHO05D008824 4.2e-09 65.9 74 40.5
FAN16G1261 Fragaria x ananassa HOM05D006956 ORTHO05D008824 1.2e-08 64.3 60 48.3
Potri.011G142501 Populus trichocarpa HOM05D006956 ORTHO05D008824 3.9e-07 59.3 87 40.2
vmacro09782 Vaccinium macrocarpon HOM05D006956 ORTHO05D008824 7.4e-06 55.1 64 42.2


User provided reference genes

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