Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c4_3720 Physcomitrium patens HOM05D006042 ORTHO05D007658 1.7e-143 512.7 267 100.0
Medtr6g017260 Medicago truncatula HOM05D006042 ORTHO05D007658 1.8e-76 290.0 214 71.5
Mapoly0019s0052 Marchantia polymorpha HOM05D006042 ORTHO05D007658 3.1e-76 289.3 263 63.5
Manes.02G066700 Manihot esculenta HOM05D006042 ORTHO05D007658 6.9e-76 288.1 228 68.0
Psat1g013000 Pisum sativum HOM05D006042 ORTHO05D007658 1.2e-75 287.3 221 70.1
Actinidia26288 Actinidia chinensis HOM05D006042 ORTHO05D007658 3.4e-75 285.8 270 59.3
Ca_30067_v3 Cicer arietinum L. HOM05D006042 ORTHO05D007658 3.4e-75 285.8 199 72.4
Prupe.3G239600 Prunus persica HOM05D006042 ORTHO05D007658 3.4e-75 285.8 215 68.8
MD09G1084900 Malus domestica HOM05D006042 ORTHO05D007658 1.3e-74 283.9 200 72.0
BcaC08g44400 Brassica carinata HOM05D006042 ORTHO05D007658 1.7e-74 283.5 214 67.3
TPR.G32447 Trifolium pratense HOM05D006042 ORTHO05D007658 1.7e-74 283.5 221 68.8
CARHR214100 Cardamine hirsuta HOM05D006042 ORTHO05D007658 2.2e-74 283.1 208 67.8
MD17G1074400 Malus domestica HOM05D006042 ORTHO05D007658 2.2e-74 283.1 199 71.9
C06p18330 Brassica napus HOM05D006042 ORTHO05D007658 2.9e-74 282.7 208 67.8
BolC6t37045H Brassica oleracea HOM05D006042 ORTHO05D007658 2.9e-74 282.7 208 67.8
Ciclev10012434m.g Citrus clementina HOM05D006042 ORTHO05D007658 3.8e-74 282.3 264 59.8
AagrBONN_evm.TU.Sc2ySwM_340.223 Anthoceros agrestis HOM05D000513 ORTHO05D003825 6.4e-74 281.6 188 77.1
Lalb_Chr06g0174661 Lupinus albus HOM05D006042 ORTHO05D007658 8.4e-74 281.2 220 69.1
CiPaw.03G059800 Carya illinoinensis HOM05D006042 ORTHO05D007658 1.1e-73 280.8 234 65.8
BcaB02g07998 Brassica carinata HOM05D006042 ORTHO05D007658 1.4e-73 280.4 214 65.9
CANSAT64G1085 Cannabis sativa HOM05D006042 ORTHO05D007658 1.4e-73 280.4 208 68.3
Nitab4.5_0002489g0020 Nicotiana tabacum HOM05D006042 ORTHO05D007658 1.4e-73 280.4 228 67.5
THA.LOC104805550 Tarenaya hassleriana HOM05D006042 ORTHO05D007658 1.9e-73 280.0 228 64.9
A07p19810 Brassica napus HOM05D006042 ORTHO05D007658 2.4e-73 279.6 208 67.3
BraA07t29682Z Brassica rapa HOM05D006042 ORTHO05D007658 2.4e-73 279.6 208 67.3
Glyma.19G045600 Glycine max HOM05D006042 ORTHO05D007658 2.4e-73 279.6 207 70.5
Lj2g0022623 Lotus japonicus HOM05D006042 ORTHO05D007658 2.4e-73 279.6 208 70.7
Nitab4.5_0004721g0010 Nicotiana tabacum HOM05D006042 ORTHO05D007658 2.4e-73 279.6 218 68.8
AL7G51880 Arabidopsis lyrata HOM05D006042 ORTHO05D007658 3.2e-73 279.3 213 66.7
CBR_g44937 Chara braunii HOM05D006042 ORTHO05D007658 3.2e-73 279.3 208 67.8
Thhalv10027870m.g Eutrema salsugineum HOM05D006042 ORTHO05D007658 3.2e-73 279.3 228 63.2
Sp1g29720 Schrenkiella parvula HOM05D006042 ORTHO05D007658 3.2e-73 279.3 229 63.3
Atru.chr8.825 Acer truncatum HOM05D006042 ORTHO05D007658 4.2e-73 278.9 242 64.0
Eucgr.F02481 Eucalyptus grandis HOM05D006042 ORTHO05D007658 4.2e-73 278.9 258 60.9
ECA232G3341 Erigeron canadensis HOM05D006042 ORTHO05D007658 5.4e-73 278.5 218 66.1
FAN09G0627 Fragaria x ananassa HOM05D006042 ORTHO05D007658 5.4e-73 278.5 199 70.4
MSTRG.2747 Avicennia marina HOM05D006042 ORTHO05D007658 7.1e-73 278.1 220 65.9
QL02p052540 Quercus lobata HOM05D006042 ORTHO05D007658 7.1e-73 278.1 208 68.8
Carub.0007s3720 Capsella rubella HOM05D006042 ORTHO05D007658 9.3e-73 277.7 222 64.9
FvH4_6g45340 Fragaria vesca HOM05D006042 ORTHO05D007658 9.3e-73 277.7 199 70.4
FAN14G4491 Fragaria x ananassa HOM05D006042 ORTHO05D007658 9.3e-73 277.7 199 70.4
RcHm_v2.0_Chr2g0163121 Rosa chinensis HOM05D006042 ORTHO05D007658 1.2e-72 277.3 199 69.8
GSVIVG01036442001 Vitis vinifera HOM05D006042 ORTHO05D007658 1.6e-72 276.9 278 57.9
FAN05G0122 Fragaria x ananassa HOM05D006042 ORTHO05D007658 2.1e-72 276.6 199 69.8
Migut.H00201 Erythranthe guttata HOM05D006042 ORTHO05D007658 2.7e-72 276.2 215 67.0
Thecc.04G137400 Theobroma cacao HOM05D006042 ORTHO05D007658 2.7e-72 276.2 218 66.1
CSS0008868 Camellia sinensis var. sinensis HOM05D006042 ORTHO05D007658 3.5e-72 275.8 215 67.0
Oeu030760.1 Olea europaea HOM05D006042 ORTHO05D007658 3.5e-72 275.8 220 67.3
Cfa007944 Carpinus fangiana HOM05D006042 ORTHO05D007658 6.0e-72 275.0 213 66.7
Hma1.2p1_0550F.1_g177265 Hydrangea macrophylla HOM05D006042 ORTHO05D007658 7.9e-72 274.6 198 70.7
VMungo0464G1707 Vigna mungo HOM05D006042 ORTHO05D007658 7.9e-72 274.6 206 69.9
ATR0589G121 Amborella trichopoda HOM05D006042 ORTHO05D007658 1.0e-71 274.2 207 68.1
ClCG11G005350 Citrullus lanatus HOM05D006042 ORTHO05D007658 1.0e-71 274.2 207 69.6
Cc07_g09000 Coffea canephora HOM05D006042 ORTHO05D007658 1.0e-71 274.2 207 67.1
HanXRQChr14g0438681 Helianthus annuus HOM05D006042 ORTHO05D007658 1.0e-71 274.2 228 63.6
SEGI_07967 Sequoiadendron giganteum HOM05D006042 ORTHO05D007658 1.7e-71 273.5 217 65.9
Phvul.004G063000 Phaseolus vulgaris HOM05D006042 ORTHO05D007658 2.3e-71 273.1 207 69.6
Sopen03g006950 Solanum pennellii HOM05D006042 ORTHO05D007658 2.3e-71 273.1 217 66.8
CsaV3_5G039130 Cucumis sativus L. HOM05D006042 ORTHO05D007658 3.0e-71 272.7 205 69.8
arahy.Tifrunner.gnm1.ann1.TWH6SW Arachis hypogaea HOM05D006042 ORTHO05D007658 3.9e-71 272.3 236 63.1
TWI53G1226 Tripterygium wilfordii HOM05D006042 ORTHO05D007658 5.1e-71 271.9 231 64.1
Lsat_1_v5_gn_4_153081 Lactuca sativa HOM05D006042 ORTHO05D007658 6.6e-71 271.6 225 63.6
PGSC0003DMG400019582 Solanum tuberosum HOM05D006042 ORTHO05D007658 1.1e-70 270.8 217 65.9
PSO063G0034 Papaver somniferum HOM05D006042 ORTHO05D007658 1.5e-70 270.4 223 65.5
Solyc03g034170.4 Solanum lycopersicum HOM05D006042 ORTHO05D007658 1.9e-70 270.0 217 65.9
Os08g0359000 Oryza sativa ssp. japonica HOM05D006042 ORTHO05D007658 2.5e-70 269.6 262 59.2
CAN.G995.2 Capsicum annuum HOM05D006042 ORTHO05D007658 3.3e-70 269.2 207 67.1
Gohir.A11G162500 Gossypium hirsutum HOM05D006042 ORTHO05D007658 4.3e-70 268.9 217 65.0
Gorai.007G180300 Gossypium raimondii HOM05D006042 ORTHO05D007658 5.6e-70 268.5 236 61.9
Zm00001eb042940 Zea mays HOM05D006042 ORTHO05D007658 5.6e-70 268.5 233 63.9
Gohir.D11G168732 Gossypium hirsutum HOM05D006042 ORTHO05D007658 7.3e-70 268.1 236 61.4
Potri.017G112700 Populus trichocarpa HOM05D006042 ORTHO05D007658 7.3e-70 268.1 208 67.8
DCAR_009854 Daucus carota HOM05D006042 ORTHO05D007658 9.6e-70 267.7 210 66.7
PGR004G1523 Punica granatum HOM05D006042 ORTHO05D007658 9.6e-70 267.7 277 55.6
Duzib138G1312 Durio zibethinus HOM05D006042 ORTHO05D007658 1.3e-69 267.3 266 56.8
PSO782G1563 Papaver somniferum HOM05D006042 ORTHO05D007658 1.3e-69 267.3 223 65.5
MBI09_g41181_MAGBIO Magnolia biondii HOM05D006042 ORTHO05D007658 2.1e-69 266.5 239 62.8
Potri.004G102100 Populus trichocarpa HOM05D006042 ORTHO05D007658 2.1e-69 266.5 230 63.0
Hund16127 Selenicereus undatus HOM05D006042 ORTHO05D007658 6.2e-69 265.0 216 62.5
SMO232G0004 Selaginella moellendorffii HOM05D006042 ORTHO05D007658 1.1e-68 264.2 205 69.8
Aqoxy3G03922 Aquilegia oxysepala HOM05D006042 ORTHO05D007658 1.4e-68 263.8 217 64.5
FAN02G0945 Fragaria x ananassa HOM05D006042 ORTHO05D007658 1.4e-68 263.8 198 68.7
COL.COLO4_16190 Corchorus olitorius HOM05D002377 ORTHO05D007658 3.1e-68 262.7 193 70.5
Sed0018352 Sechium edule HOM05D006042 ORTHO05D007658 4.0e-68 262.3 270 57.4
SalBow3G2575 Salvia bowleyana HOM05D006042 ORTHO05D007658 5.3e-68 261.9 236 60.6
SalBow3G3727 Salvia bowleyana HOM05D006042 ORTHO05D007658 5.3e-68 261.9 236 60.6
Sc10g0001330 Simmondsia chinensis HOM05D006042 ORTHO05D007658 9.0e-68 261.2 257 59.1
HPP92_008047 Vanilla planifolia HOM05D006042 ORTHO05D007658 1.5e-67 260.4 203 66.5
AT5G38660 Arabidopsis thaliana HOM05D006042 ORTHO05D007658 3.4e-67 259.2 213 63.8
AUR62014538 Chenopodium quinoa HOM05D006042 ORTHO05D007658 3.4e-67 259.2 181 71.3
AUR62008965 Chenopodium quinoa HOM05D006042 ORTHO05D007658 1.7e-66 256.9 181 70.2
vmacro18106 Vaccinium macrocarpon HOM05D006042 ORTHO05D007658 4.2e-65 252.3 168 75.6
Aa31LG9G16960 Aethionema arabicum HOM05D006042 ORTHO05D007658 7.1e-65 251.5 170 72.4
Ca_26178_v3 Cicer arietinum L. HOM05D006042 ORTHO05D007658 3.9e-63 245.7 162 75.9
Rhsim08G0079500 Rhododendron simsii HOM05D006042 ORTHO05D007658 8.7e-63 244.6 187 69.0
Lj2C447G3 Lonicera japonica HOM05D006042 ORTHO05D007658 4.3e-62 242.3 210 61.9
SGA_v2.0_scaffold49G18090 Striga asiatica HOM05D006042 ORTHO05D007658 2.2e-58 229.9 191 64.4
EL10Ac2g04605 Beta vulgaris HOM05D006042 ORTHO05D007658 3.8e-58 229.2 195 62.6
arahy.Tifrunner.gnm1.ann1.4I03R9 Arachis hypogaea HOM05D006042 ORTHO05D007658 4.9e-58 228.8 205 61.0
Sabra04G0078300 Salix brachista HOM05D006042 ORTHO05D007658 4.2e-57 225.7 245 52.7
Nn3g17761 Nelumbo nucifera HOM05D006042 ORTHO05D007658 1.9e-54 216.9 238 54.2
Hma1.2p1_0550F.1_g177260 Hydrangea macrophylla HOM05D006042 ORTHO05D007658 3.4e-51 206.1 142 73.2
CDE09G0042 Ceratophyllum demersum HOM05D006042 ORTHO05D007658 4.5e-51 205.7 244 52.5
Dinv34847 Davidia involucrata HOM05D006042 ORTHO05D007658 1.7e-50 203.8 154 68.8
Cre16.g665250 Chlamydomonas reinhardtii HOM05D006042 ORTHO05D007658 3.8e-50 202.6 240 48.8
MCO16G088 Micromonas commoda HOM05D006042 ORTHO05D007658 1.6e-48 197.2 193 53.4
PRCOL_00000779 Prasinoderma coloniale HOM05D006042 ORTHO05D007658 3.5e-48 196.1 188 53.2
MELO3C022088.2 Cucumis melo HOM05D006042 ORTHO05D007658 7.2e-41 171.8 210 51.4
Cpa.g.sc179.22 Carica papaya HOM05D006042 ORTHO05D007658 9.4e-41 171.4 124 67.7
Peaxi162Scf00751g00624 Petunia axillaris HOM05D006042 ORTHO05D007658 2.1e-40 170.2 125 69.6
MBI09_g40289_MAGBIO Magnolia biondii HOM05D006042 ORTHO05D007658 1.0e-39 167.9 130 68.5
GSVIVG01026074001 Vitis vinifera HOM05D006042 ORTHO05D007658 4.5e-35 152.5 118 65.3
BcaC02g09662 Brassica carinata HOM05D006042 ORTHO05D007658 5.9e-35 152.1 199 45.7
BolC3t18613H Brassica oleracea HOM05D006042 ORTHO05D032368 2.5e-33 146.7 95 74.7
BolC5t30891H Brassica oleracea HOM05D006042 ORTHO05D007658 9.4e-33 144.8 94 74.5
TAR278G0002 Trochodendron aralioides HOM05D006042 ORTHO05D007658 5.7e-30 135.6 114 63.2
unitig_0.g9 Utricularia gibba HOM05D006042 ORTHO05D007658 4.5e-27 125.9 108 61.1
GSVIVG01027526001 Vitis vinifera HOM05D006042 ORTHO05D007658 3.2e-25 119.8 78 74.4
C04p45290 Brassica napus HOM05D006042 ORTHO05D007658 1.2e-24 117.9 162 43.2
Cpa.g.sc179.23 Carica papaya HOM05D006042 ORTHO05D007658 2.1e-24 117.1 80 72.5
BolC4t26112H Brassica oleracea HOM05D006042 ORTHO05D007658 1.4e-23 114.4 74 71.6
Haze_14131 Corylus avellana HOM05D006042 ORTHO05D007658 3.3e-22 109.8 115 54.8
Haze_14130 Corylus avellana HOM05D006042 ORTHO05D007658 4.5e-19 99.4 76 64.5
QL02p057613 Quercus lobata HOM05D006042 ORTHO05D007658 8.3e-13 78.6 55 67.3
BcaC05g29172 Brassica carinata HOM05D006042 ORTHO05D032368 1.8e-12 77.4 48 72.9
C02p54890 Brassica napus HOM05D006042 ORTHO05D032368 2.4e-12 77.0 49 71.4
CARHR262580 Cardamine hirsuta HOM05D006042 ORTHO05D007658 1.0e-10 71.6 157 36.3
Sabra17G0093400 Salix brachista HOM05D006042 ORTHO05D007658 1.0e-10 71.6 83 49.4
Ah.16g101960 Amaranthus hybridus HOM05D000095 ORTHO05D000330 3.8e-10 69.7 57 61.4
Phvul.004G063400 Phaseolus vulgaris HOM05D002377 ORTHO05D002656 9.4e-09 65.1 82 46.3
Peaxi162Scf00104g00074 Petunia axillaris HOM05D006042 ORTHO05D007658 4.0e-07 59.7 47 66.0
Phvul.004G063200 Phaseolus vulgaris HOM05D002377 ORTHO05D002656 1.5e-06 57.8 47 59.6


User provided reference genes

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