Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c4_3300 Physcomitrium patens HOM05D003847 ORTHO05D004976 7.0e-240 833.6 429 100.0
Pp3c12_25070 Physcomitrium patens HOM05D003847 ORTHO05D004976 1.6e-215 752.7 429 89.5
SEGI_36957 Sequoiadendron giganteum HOM05D003847 ORTHO05D004976 6.7e-198 694.1 423 81.8
AagrBONN_evm.TU.Sc2ySwM_344.5530 Anthoceros agrestis HOM05D003847 ORTHO05D004976 3.1e-195 685.3 423 81.1
Migut.N01455 Erythranthe guttata HOM05D003847 ORTHO05D004976 4.9e-193 677.9 423 78.3
Gorai.007G102500 Gossypium raimondii HOM05D003847 ORTHO05D004976 1.6e-191 672.9 423 77.5
COL.COLO4_12761 Corchorus olitorius HOM05D003847 ORTHO05D004976 3.5e-191 671.8 423 77.5
Gohir.A11G091500 Gossypium hirsutum HOM05D003847 ORTHO05D004976 3.5e-191 671.8 423 77.3
Gohir.D11G096200 Gossypium hirsutum HOM05D003847 ORTHO05D004976 1.8e-190 669.5 423 77.3
Ciclev10020054m.g Citrus clementina HOM05D003847 ORTHO05D004976 2.3e-190 669.1 423 77.8
Mapoly0151s0045 Marchantia polymorpha HOM05D003847 ORTHO05D004976 2.3e-190 669.1 423 80.6
CsaV3_3G008710 Cucumis sativus L. HOM05D003847 ORTHO05D004976 3.9e-190 668.3 423 77.8
MELO3C006089.2 Cucumis melo HOM05D003847 ORTHO05D004976 5.1e-190 667.9 423 77.5
ECA234G3268 Erigeron canadensis HOM05D003847 ORTHO05D004976 5.1e-190 667.9 425 77.9
Lsat_1_v5_gn_4_34641 Lactuca sativa HOM05D003847 ORTHO05D004976 5.1e-190 667.9 423 77.8
Sed0007018 Sechium edule HOM05D003847 ORTHO05D004976 8.7e-190 667.2 423 77.1
Thecc.01G354200 Theobroma cacao HOM05D003847 ORTHO05D004976 1.1e-189 666.8 423 77.3
GSVIVG01026981001 Vitis vinifera HOM05D003847 ORTHO05D004976 1.1e-189 666.8 423 76.8
QL04p055042 Quercus lobata HOM05D003847 ORTHO05D004976 1.9e-189 666.0 422 76.5
Sopen01g038710 Solanum pennellii HOM05D003847 ORTHO05D004976 3.7e-188 661.8 423 76.1
Solyc01g094930.3 Solanum lycopersicum HOM05D003847 ORTHO05D004976 6.3e-188 661.0 423 76.1
CSS0029735 Camellia sinensis var. sinensis HOM05D003847 ORTHO05D004976 1.1e-187 660.2 423 76.4
Cc02_g38410 Coffea canephora HOM05D003847 ORTHO05D004976 1.1e-187 660.2 423 76.8
Potri.014G088900 Populus trichocarpa HOM05D003847 ORTHO05D004976 1.4e-187 659.8 423 76.1
CiPaw.01G065300 Carya illinoinensis HOM05D003847 ORTHO05D004976 1.8e-187 659.4 423 76.1
CAN.G78.110 Capsicum annuum HOM05D003847 ORTHO05D004976 2.4e-187 659.1 423 76.1
HanXRQChr17g0562361 Helianthus annuus HOM05D003847 ORTHO05D004976 5.3e-187 657.9 423 76.6
FAN06G3510 Fragaria x ananassa HOM05D003847 ORTHO05D004976 6.9e-187 657.5 423 76.1
Lalb_Chr04g0259201 Lupinus albus HOM05D003847 ORTHO05D004976 6.9e-187 657.5 423 75.2
Potri.002G162700 Populus trichocarpa HOM05D003847 ORTHO05D004976 6.9e-187 657.5 423 76.1
SGA_v2.0_scaffold43G16402 Striga asiatica HOM05D003847 ORTHO05D004976 1.5e-186 656.4 423 77.8
Actinidia02826 Actinidia chinensis HOM05D003847 ORTHO05D004976 2.6e-186 655.6 423 75.4
Phvul.008G059300 Phaseolus vulgaris HOM05D003847 ORTHO05D004976 3.4e-186 655.2 423 75.7
ATR0661G289 Amborella trichopoda HOM05D003847 ORTHO05D004976 4.5e-186 654.8 422 75.4
Duzib133G1387 Durio zibethinus HOM05D003847 ORTHO05D004976 4.5e-186 654.8 417 76.7
FAN10G1372 Fragaria x ananassa HOM05D003847 ORTHO05D004976 4.5e-186 654.8 423 75.9
Manes.05G031000 Manihot esculenta HOM05D003847 ORTHO05D004976 4.5e-186 654.8 423 75.9
PGR042G1058 Punica granatum HOM05D003847 ORTHO05D004976 5.9e-186 654.4 423 75.2
VMungo1383G0817 Vigna mungo HOM05D003847 ORTHO05D004976 5.9e-186 654.4 423 75.7
Eucgr.D02317 Eucalyptus grandis HOM05D003847 ORTHO05D004976 7.7e-186 654.1 423 75.7
CANSAT56G2934 Cannabis sativa HOM05D003847 ORTHO05D004976 1.0e-185 653.7 423 75.7
FAN10G2219 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.0e-185 653.7 423 75.9
DCAR_025211 Daucus carota HOM05D003847 ORTHO05D004976 1.3e-185 653.3 423 75.7
Hma1.2p1_0627F.1_g191710 Hydrangea macrophylla HOM05D003847 ORTHO05D004976 1.3e-185 653.3 423 75.9
Nn1g01640 Nelumbo nucifera HOM05D003847 ORTHO05D004976 1.7e-185 652.9 423 74.9
RcHm_v2.0_Chr1g0357201 Rosa chinensis HOM05D003847 ORTHO05D004976 1.7e-185 652.9 423 75.9
TWI59G0695 Tripterygium wilfordii HOM05D003847 ORTHO05D004976 1.7e-185 652.9 423 75.4
Prupe.2G175500 Prunus persica HOM05D003847 ORTHO05D004976 2.2e-185 652.5 423 74.7
arahy.Tifrunner.gnm1.ann1.9YV9D4 Arachis hypogaea HOM05D003847 ORTHO05D004976 5.0e-185 651.4 423 75.9
EL10Ac1g00369 Beta vulgaris HOM05D003847 ORTHO05D004976 5.0e-185 651.4 442 73.1
AUR62004399 Chenopodium quinoa HOM05D003847 ORTHO05D004976 5.0e-185 651.4 424 75.2
MD01G1069400 Malus domestica HOM05D003847 ORTHO05D004976 1.1e-184 650.2 423 74.9
Glyma.09G255600 Glycine max HOM05D003847 ORTHO05D004976 3.2e-184 648.7 423 74.9
Sc26g0000820 Simmondsia chinensis HOM05D003847 ORTHO05D004976 3.2e-184 648.7 427 74.2
CDE11G0931 Ceratophyllum demersum HOM05D003847 ORTHO05D004976 4.2e-184 648.3 423 74.7
AUR62022605 Chenopodium quinoa HOM05D003847 ORTHO05D004976 4.2e-184 648.3 424 75.0
arahy.Tifrunner.gnm1.ann1.P1PLPP Arachis hypogaea HOM05D003847 ORTHO05D004976 7.2e-184 647.5 423 75.4
Lj1g0024026 Lotus japonicus HOM05D003847 ORTHO05D004976 7.2e-184 647.5 423 74.2
Medtr7g078760 Medicago truncatula HOM05D003847 ORTHO05D004976 7.2e-184 647.5 422 74.6
Ca_00820_v3 Cicer arietinum L. HOM05D003847 ORTHO05D004976 9.4e-184 647.1 422 74.6
Glyma.18G237300 Glycine max HOM05D003847 ORTHO05D004976 9.4e-184 647.1 423 75.2
THA.LOC104817033 Tarenaya hassleriana HOM05D003847 ORTHO05D004976 9.4e-184 647.1 420 74.8
Hund16669 Selenicereus undatus HOM05D003847 ORTHO05D004976 1.2e-183 646.7 424 75.7
DCAR_008629 Daucus carota HOM05D003847 ORTHO05D004976 2.7e-183 645.6 423 74.7
FAN03G1748 Fragaria x ananassa HOM05D003847 ORTHO05D004976 2.7e-183 645.6 437 73.5
BcaC04g24142 Brassica carinata HOM05D003847 ORTHO05D004976 3.6e-183 645.2 422 74.9
C09p00660 Brassica napus HOM05D003847 ORTHO05D004976 3.6e-183 645.2 422 74.9
Aqoxy5G04080 Aquilegia oxysepala HOM05D003847 ORTHO05D004976 7.9e-183 644.0 423 74.9
Sabra14G0064600 Salix brachista HOM05D003847 ORTHO05D004976 1.0e-182 643.7 415 75.7
MSTRG.28227 Avicennia marina HOM05D003847 ORTHO05D004976 2.3e-182 642.5 423 75.4
BolC9t53000H Brassica oleracea HOM05D003847 ORTHO05D004976 2.3e-182 642.5 422 74.6
FAN01G0997 Fragaria x ananassa HOM05D003847 ORTHO05D004976 3.9e-182 641.7 414 76.1
BraA09t35735Z Brassica rapa HOM05D003847 ORTHO05D004976 5.1e-182 641.3 422 74.6
TPR.G22298 Trifolium pratense HOM05D003847 ORTHO05D004976 5.1e-182 641.3 421 75.1
A09p00040 Brassica napus HOM05D003847 ORTHO05D004976 6.7e-182 641.0 422 74.6
BcaB01g02281 Brassica carinata HOM05D003847 ORTHO05D004976 8.8e-182 640.6 422 74.4
C03p39000 Brassica napus HOM05D003847 ORTHO05D004976 2.5e-181 639.0 422 74.4
BolC3t16172H Brassica oleracea HOM05D003847 ORTHO05D004976 2.5e-181 639.0 422 74.4
Thhalv10028603m.g Eutrema salsugineum HOM05D003847 ORTHO05D004976 2.5e-181 639.0 422 74.4
Lj9C587T13 Lonicera japonica HOM05D003847 ORTHO05D004976 9.7e-181 637.1 423 74.7
AT4G01320 Arabidopsis thaliana HOM05D003847 ORTHO05D004976 1.7e-180 636.3 422 74.2
CDE09G0314 Ceratophyllum demersum HOM05D003847 ORTHO05D004976 1.7e-180 636.3 423 73.5
BraA03t12370Z Brassica rapa HOM05D003847 ORTHO05D004976 2.2e-180 636.0 422 73.9
Carub.0006s3638 Capsella rubella HOM05D003847 ORTHO05D004976 2.8e-180 635.6 422 74.2
CARHR249000 Cardamine hirsuta HOM05D003847 ORTHO05D004976 4.8e-180 634.8 422 74.2
Sabra02G0147800 Salix brachista HOM05D003847 ORTHO05D004976 4.8e-180 634.8 447 71.1
THA.LOC104825858 Tarenaya hassleriana HOM05D003847 ORTHO05D004976 6.3e-180 634.4 423 74.0
PSO478G2530 Papaver somniferum HOM05D003847 ORTHO05D004976 8.2e-180 634.0 423 74.0
Sp6g00820 Schrenkiella parvula HOM05D003847 ORTHO05D004976 8.2e-180 634.0 422 73.9
BcaC01g06856 Brassica carinata HOM05D003847 ORTHO05D004976 2.4e-179 632.5 420 74.0
Os02g0680400 Oryza sativa ssp. japonica HOM05D003847 ORTHO05D004976 3.1e-179 632.1 421 72.4
PSO782G0912 Papaver somniferum HOM05D003847 ORTHO05D004976 3.1e-179 632.1 423 73.8
BcaB01g02153 Brassica carinata HOM05D003847 ORTHO05D004976 5.3e-179 631.3 420 73.6
Zm00001eb187240 Zea mays HOM05D003847 ORTHO05D004976 1.0e-177 627.1 421 72.4
A03p31980 Brassica napus HOM05D003847 ORTHO05D004976 1.1e-176 623.6 415 73.7
AL6G52080 Arabidopsis lyrata HOM05D003847 ORTHO05D004976 4.2e-176 621.7 413 74.3
Sabra02G0148200 Salix brachista HOM05D003847 ORTHO05D004976 1.2e-175 620.2 469 67.6
RcHm_v2.0_Chr1g0357211 Rosa chinensis HOM05D003847 ORTHO05D004976 9.7e-173 610.5 423 70.4
Atru.chr5.1381 Acer truncatum HOM05D003847 ORTHO05D004976 4.8e-172 608.2 430 69.8
FAN10G0014 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.1e-171 607.1 423 69.7
SMO364G0773 Selaginella moellendorffii HOM05D003847 ORTHO05D004976 1.4e-171 606.7 423 71.6
FvH4_7g15083 Fragaria vesca HOM05D003847 ORTHO05D004976 3.5e-170 602.1 423 69.3
Duzib138G0396 Durio zibethinus HOM05D003847 ORTHO05D004976 3.6e-167 592.0 423 70.7
ClCG05G001330 Citrullus lanatus HOM05D003847 ORTHO05D004976 3.0e-166 589.0 423 69.7
MBI04_g26959_MAGBIO Magnolia biondii HOM05D003847 ORTHO05D004976 3.3e-165 585.5 423 68.6
Haze_15549 Corylus avellana HOM05D003847 ORTHO05D004976 9.7e-165 583.9 428 68.7
FAN03G0710 Fragaria x ananassa HOM05D003847 ORTHO05D004976 4.8e-164 581.6 419 68.3
TAR629G0433 Trochodendron aralioides HOM05D003847 ORTHO05D004976 2.4e-163 579.3 416 69.7
Dinv43851 Davidia involucrata HOM05D003847 ORTHO05D004976 3.1e-163 578.9 423 68.3
Nitab4.5_0003779g0180 Nicotiana tabacum HOM05D003847 ORTHO05D004976 4.1e-163 578.6 423 69.0
CBR_g23782 Chara braunii HOM05D003847 ORTHO05D004976 2.6e-162 575.9 411 69.6
Nitab4.5_0001702g0130 Nicotiana tabacum HOM05D003847 ORTHO05D004976 5.9e-162 574.7 431 68.2
Oeu015226.2 Olea europaea HOM05D003847 ORTHO05D004976 1.3e-161 573.5 413 70.2
arahy.Tifrunner.gnm1.ann1.W45FS6 Arachis hypogaea HOM05D003847 ORTHO05D004976 5.0e-161 571.6 423 68.8
SalBow5G2471 Salvia bowleyana HOM05D003847 ORTHO05D004976 8.5e-161 570.9 440 66.4
Oeu036597.2 Olea europaea HOM05D003847 ORTHO05D004976 1.2e-159 567.0 611 51.7
FvH4_7g15084 Fragaria vesca HOM05D003847 ORTHO05D004976 6.3e-156 554.7 421 64.4
vmacro20904 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 4.1e-155 552.0 418 66.3
Nitab4.5_0001269g0010 Nicotiana tabacum HOM05D003847 ORTHO05D004976 1.2e-154 550.4 415 66.7
FAN06G4494 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.0e-153 547.4 406 65.5
Cfa003885 Carpinus fangiana HOM05D003847 ORTHO05D004976 1.7e-153 546.6 402 69.4
FAN06G0785 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.7e-153 546.6 413 64.6
Psat3g106680 Pisum sativum HOM05D003847 ORTHO05D004976 2.2e-153 546.2 362 73.8
Nitab4.5_0011900g0010 Nicotiana tabacum HOM05D003847 ORTHO05D004976 1.9e-152 543.1 473 61.1
FAN10G3576 Fragaria x ananassa HOM05D003847 ORTHO05D004976 2.5e-152 542.7 414 65.0
RcHm_v2.0_Chr1g0357271 Rosa chinensis HOM05D003847 ORTHO05D004976 1.6e-151 540.0 411 65.0
FAN06G4922 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.0e-150 537.3 412 66.0
TAR375G0471 Trochodendron aralioides HOM05D003847 ORTHO05D004976 8.8e-150 534.3 352 74.4
HanXRQChr16g0521851 Helianthus annuus HOM05D003847 ORTHO05D004976 2.8e-148 529.3 410 65.6
HanXRQChr16g0521861 Helianthus annuus HOM05D003847 ORTHO05D004976 1.1e-147 527.3 430 62.8
Dinv32510 Davidia involucrata HOM05D003847 ORTHO05D004976 2.3e-145 519.6 352 73.6
Sed0024082 Sechium edule HOM05D003847 ORTHO05D004976 1.5e-144 516.9 338 75.1
FvH4_7g15081 Fragaria vesca HOM05D003847 ORTHO05D004976 1.6e-143 513.5 338 74.0
Atru.chr5.547 Acer truncatum HOM05D003847 ORTHO05D004976 2.3e-142 509.6 342 72.8
vmacro04325 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 3.0e-142 509.2 430 59.8
FAN10G3432 Fragaria x ananassa HOM05D003847 ORTHO05D004976 5.7e-141 505.0 412 60.2
HPP92_022235 Vanilla planifolia HOM05D003847 ORTHO05D004976 6.3e-140 501.5 312 78.8
FAN10G2623 Fragaria x ananassa HOM05D003847 ORTHO05D004976 9.5e-136 487.6 402 60.7
Peaxi162Scf00020g01122 Petunia axillaris HOM05D003847 ORTHO05D004976 2.8e-135 486.1 415 60.2
QL12p031965 Quercus lobata HOM05D003847 ORTHO05D004976 3.7e-132 475.7 420 58.1
TAR636G3069 Trochodendron aralioides HOM05D003847 ORTHO05D004976 7.5e-125 451.4 286 78.3
Aa31LG5G720 Aethionema arabicum HOM05D003847 ORTHO05D004976 2.9e-124 449.5 301 72.8
arahy.Tifrunner.gnm1.ann1.U13Q33 Arachis hypogaea HOM05D003847 ORTHO05D004976 3.2e-123 446.0 284 77.1
FAN01G2116 Fragaria x ananassa HOM05D003847 ORTHO05D004976 3.5e-122 442.6 414 57.2
Hund27252 Selenicereus undatus HOM05D003847 ORTHO05D004976 2.4e-115 419.9 434 52.8
Cre07.g356150 Chlamydomonas reinhardtii HOM05D003847 ORTHO05D004976 9.5e-112 407.9 431 52.2
Medtr8g028680 Medicago truncatula HOM05D003847 ORTHO05D004976 5.8e-109 398.7 440 50.9
MSTRG.4846 Avicennia marina HOM05D003847 ORTHO05D004976 1.1e-107 394.4 237 81.4
PRCOL_00003828 Prasinoderma coloniale HOM05D003847 ORTHO05D004976 1.9e-99 367.1 436 46.8
Psat2g071920 Pisum sativum HOM05D003847 ORTHO05D004976 9.6e-88 328.2 252 63.9
Haze_26886 Corylus avellana HOM05D003847 ORTHO05D004976 7.4e-80 302.0 410 40.5
Cpa.g.sc184.22 Carica papaya HOM05D003847 ORTHO05D004976 1.3e-79 301.2 171 83.6
vmacro05292 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 6.5e-76 288.9 465 39.4
Gohir.A13G099905 Gossypium hirsutum HOM05D003847 ORTHO05D004976 1.4e-67 261.2 199 66.3
vmacro05290 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 4.5e-61 239.6 239 53.6
Psat1g001760 Pisum sativum HOM05D003847 ORTHO05D004976 3.7e-55 219.9 168 64.9
unitig_22.g6721 Utricularia gibba HOM05D001167 ORTHO05D001054 1.1e-54 218.4 153 68.0
SalBow5G1235 Salvia bowleyana HOM05D003847 ORTHO05D004976 3.2e-51 206.8 252 51.6
Hma1.2p1_0456F.1_g156440 Hydrangea macrophylla HOM05D003847 ORTHO05D004976 6.7e-49 199.1 167 60.5
CANSAT25G3593 Cannabis sativa HOM05D003847 ORTHO05D004976 3.3e-48 196.8 158 67.1
Atru.chr12.614 Acer truncatum HOM05D003847 ORTHO05D004976 7.2e-43 179.1 160 57.5
Mapoly1163s0001 Marchantia polymorpha HOM05D003847 ORTHO05D026554 1.4e-33 148.3 86 86.0
RcHm_v2.0_Chr3g0493601 Rosa chinensis HOM05D003847 ORTHO05D004976 3.5e-29 133.7 96 68.8
CANSAT25G0211 Cannabis sativa HOM05D003847 ORTHO05D004976 3.4e-24 117.1 86 67.4
SGA_v2.0_scaffold190G40413 Striga asiatica HOM05D003847 ORTHO05D004976 1.7e-23 114.8 123 54.5
COL.COLO4_08374 Corchorus olitorius HOM05D000137 ORTHO05D000382 8.3e-23 112.5 215 36.7
TAR365G1016 Trochodendron aralioides HOM05D000001 ORTHO05D000003 3.9e-20 103.6 72 69.4
HanXRQChr14g0436691 Helianthus annuus HOM05D003847 ORTHO05D025737 1.2e-18 98.6 77 66.2
ATR0763G219 Amborella trichopoda HOM05D003847 ORTHO05D026554 4.7e-18 96.7 61 77.0
Psat5g164800 Pisum sativum HOM05D003847 ORTHO05D004976 4.7e-18 96.7 129 45.7
Medtr4g065940 Medicago truncatula HOM05D003847 ORTHO05D004976 1.3e-15 88.6 95 54.7
RcHm_v2.0_Chr2g0131551 Rosa chinensis HOM05D003847 ORTHO05D025737 1.2e-13 82.0 55 63.6
Lsat_1_v5_gn_8_14540 Lactuca sativa HOM05D003847 ORTHO05D005301 3.0e-12 77.4 187 32.1
RcHm_v2.0_Chr1g0357221 Rosa chinensis HOM05D003847 ORTHO05D026554 4.3e-11 73.6 230 27.4
MBI19_g13733_MAGBIO Magnolia biondii HOM05D003847 ORTHO05D011443 1.2e-10 72.0 48 70.8
Lsat_1_v5_gn_3_43021 Lactuca sativa HOM05D003847 ORTHO05D028506 5.2e-09 66.6 71 50.7
Lsat_1_v5_gn_2_83340 Lactuca sativa HOM05D003847 ORTHO05D028506 6.8e-09 66.2 45 68.9
Lsat_1_v5_gn_9_59821 Lactuca sativa HOM05D000726 ORTHO05D025737 1.5e-08 65.1 33 84.8
vmacro05291 Vaccinium macrocarpon HOM05D003847 ORTHO05D026554 2.0e-08 64.7 47 63.8
Lsat_1_v5_gn_8_143621 Lactuca sativa HOM05D003847 ORTHO05D028506 5.8e-08 63.2 44 65.9
CAN.G13.12 Capsicum annuum HOM05D002403 ORTHO05D028506 7.5e-08 62.8 42 61.9
BcaC03g16052 Brassica carinata HOM05D003847 ORTHO05D004976 2.9e-07 60.8 38 78.9


User provided reference genes

Program Settings