Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c4_31680 Physcomitrium patens HOM05D004085 ORTHO05D005189 1.4e-192 676.0 327 100.0
Pp3c3_10070 Physcomitrium patens HOM05D004085 ORTHO05D005189 5.5e-152 541.2 317 80.8
Mapoly0007s0171 Marchantia polymorpha HOM05D004085 ORTHO05D005189 2.8e-119 432.6 325 64.3
Aqoxy3G03746 Aquilegia oxysepala HOM05D004085 ORTHO05D005189 3.4e-109 399.1 317 59.9
PGR044G1995 Punica granatum HOM05D004085 ORTHO05D005189 4.4e-109 398.7 324 60.2
AagrBONN_evm.TU.Sc2ySwM_344.2928 Anthoceros agrestis HOM05D004085 ORTHO05D005189 7.5e-109 397.9 320 60.6
CAN.G587.59 Capsicum annuum HOM05D004085 ORTHO05D005189 1.3e-108 397.1 317 60.9
Nitab4.5_0002863g0020 Nicotiana tabacum HOM05D004085 ORTHO05D005189 4.9e-108 395.2 317 59.9
ATR0691G189 Amborella trichopoda HOM05D004085 ORTHO05D005189 6.4e-108 394.8 317 61.5
CSS0028863 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 6.4e-108 394.8 317 61.8
Sabra15G0078600 Salix brachista HOM05D004085 ORTHO05D005189 6.4e-108 394.8 318 61.0
PGSC0003DMG402004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 6.4e-108 394.8 317 60.6
Sopen06g026660 Solanum pennellii HOM05D004085 ORTHO05D005189 1.1e-107 394.0 317 60.6
DCAR_011575 Daucus carota HOM05D004085 ORTHO05D005189 2.4e-107 392.9 321 60.1
GSVIVG01008152001 Vitis vinifera HOM05D004085 ORTHO05D005189 2.4e-107 392.9 317 59.6
Nn4g23533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 4.1e-107 392.1 317 58.7
Solyc06g069390.4 Solanum lycopersicum HOM05D004085 ORTHO05D005189 4.1e-107 392.1 320 60.3
TAR629G1999 Trochodendron aralioides HOM05D004085 ORTHO05D005189 9.2e-107 391.0 317 60.6
Gorai.007G040300 Gossypium raimondii HOM05D004085 ORTHO05D005189 2.1e-106 389.8 317 58.7
CiPaw.05G122000 Carya illinoinensis HOM05D004085 ORTHO05D005189 2.7e-106 389.4 318 59.1
Dinv34021 Davidia involucrata HOM05D004085 ORTHO05D005189 2.7e-106 389.4 317 58.7
Hma1.2p1_0595F.1_g186285 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 4.6e-106 388.7 317 60.9
Duzib251G0046 Durio zibethinus HOM05D004085 ORTHO05D005189 6.0e-106 388.3 318 60.1
Gohir.D11G037500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 7.8e-106 387.9 317 58.7
CsaV3_6G033900 Cucumis sativus L. HOM05D004085 ORTHO05D005189 3.9e-105 385.6 317 57.4
Potri.015G048700 Populus trichocarpa HOM05D004085 ORTHO05D005189 8.6e-105 384.4 318 59.1
vmacro10475 Vaccinium macrocarpon HOM05D004085 ORTHO05D005189 1.5e-104 383.6 317 57.7
Atru.chr11.1559 Acer truncatum HOM05D004085 ORTHO05D005189 3.3e-104 382.5 317 59.0
Hma1.2p1_0428F.1_g150850 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 5.6e-104 381.7 318 58.8
PGR102G0161 Punica granatum HOM05D004085 ORTHO05D005189 7.3e-104 381.3 317 58.4
Rhsim09G0122200 Rhododendron simsii HOM05D004085 ORTHO05D005189 7.3e-104 381.3 317 58.0
CANSAT64G3016 Cannabis sativa HOM05D004085 ORTHO05D005189 9.5e-104 380.9 317 57.7
Manes.05G115200 Manihot esculenta HOM05D004085 ORTHO05D005189 1.2e-103 380.6 317 56.8
Migut.D01616 Erythranthe guttata HOM05D004085 ORTHO05D005189 2.1e-103 379.8 317 56.8
Gohir.D02G131700 Gossypium hirsutum HOM05D004085 ORTHO05D005189 2.1e-103 379.8 321 57.9
MD16G1055900 Malus domestica HOM05D004085 ORTHO05D005189 2.1e-103 379.8 323 58.2
PSO063G3410 Papaver somniferum HOM05D004085 ORTHO05D005189 2.1e-103 379.8 319 57.7
PSO409G0049 Papaver somniferum HOM05D004085 ORTHO05D005189 2.1e-103 379.8 319 58.0
Ciclev10032152m.g Citrus clementina HOM05D004085 ORTHO05D005189 2.8e-103 379.4 318 58.5
Gorai.005G147600 Gossypium raimondii HOM05D004085 ORTHO05D005189 2.8e-103 379.4 321 57.9
TWI75G0426 Tripterygium wilfordii HOM05D004085 ORTHO05D005189 3.6e-103 379.0 318 57.9
Ah.03g138610 Amaranthus hybridus HOM05D004085 ORTHO05D005189 8.1e-103 377.9 321 57.0
Actinidia07768 Actinidia chinensis HOM05D004085 ORTHO05D005189 1.1e-102 377.5 322 57.1
Peaxi162Scf00873g00113 Petunia axillaris HOM05D004085 ORTHO05D005189 1.1e-102 377.5 320 55.9
Nitab4.5_0001071g0010 Nicotiana tabacum HOM05D004085 ORTHO05D005189 1.4e-102 377.1 318 56.0
SMO146G0350 Selaginella moellendorffii HOM05D004085 ORTHO05D005189 1.4e-102 377.1 324 57.7
ClCG08G010600 Citrullus lanatus HOM05D004085 ORTHO05D005189 1.8e-102 376.7 317 55.8
Gohir.A03G106500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 1.8e-102 376.7 321 57.6
Lsat_1_v5_gn_5_23401 Lactuca sativa HOM05D004085 ORTHO05D005189 1.8e-102 376.7 318 58.2
SalBow2G2246 Salvia bowleyana HOM05D004085 ORTHO05D005189 1.8e-102 376.7 319 57.7
MSTRG.7728 Avicennia marina HOM05D004085 ORTHO05D005189 2.3e-102 376.3 319 57.4
MELO3C011402.2 Cucumis melo HOM05D004085 ORTHO05D005189 2.3e-102 376.3 317 56.5
ECA246G2852 Erigeron canadensis HOM05D004085 ORTHO05D005189 2.3e-102 376.3 317 59.0
HanXRQChr05g0157451 Helianthus annuus HOM05D004085 ORTHO05D005189 2.3e-102 376.3 320 58.8
Manes.06G081100 Manihot esculenta HOM05D004085 ORTHO05D005189 2.3e-102 376.3 320 59.4
Eucgr.J01102 Eucalyptus grandis HOM05D004085 ORTHO05D005189 3.1e-102 375.9 317 58.0
Medtr8g066120 Medicago truncatula HOM05D004085 ORTHO05D005189 4.0e-102 375.6 318 56.6
Nitab4.5_0002449g0030 Nicotiana tabacum HOM05D004085 ORTHO05D005189 5.2e-102 375.2 317 58.7
Sed0007813 Sechium edule HOM05D004085 ORTHO05D005189 6.8e-102 374.8 321 56.7
THA.LOC104805212 Tarenaya hassleriana HOM05D004085 ORTHO05D005189 6.8e-102 374.8 319 58.0
AL3G42500 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 8.9e-102 374.4 318 56.9
Ca_22870_v3 Cicer arietinum L. HOM05D004085 ORTHO05D005189 8.9e-102 374.4 320 56.9
Thecc.02G322800 Theobroma cacao HOM05D004085 ORTHO05D005189 8.9e-102 374.4 318 57.5
Dinv07974 Davidia involucrata HOM05D004085 ORTHO05D005189 1.2e-101 374.0 321 59.2
arahy.Tifrunner.gnm1.ann1.34XV9Z Arachis hypogaea HOM05D004085 ORTHO05D005189 2.6e-101 372.9 319 56.1
Phvul.003G280600 Phaseolus vulgaris HOM05D004085 ORTHO05D005189 2.6e-101 372.9 324 56.2
Prupe.1G293400 Prunus persica HOM05D004085 ORTHO05D005189 4.4e-101 372.1 320 56.9
Zm00001eb276680 Zea mays HOM05D004085 ORTHO05D005189 5.8e-101 371.7 323 57.0
AL5G13590 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 7.5e-101 371.3 319 56.4
CDE01G0369 Ceratophyllum demersum HOM05D004085 ORTHO05D005189 7.5e-101 371.3 317 56.2
Glyma.05G183800 Glycine max HOM05D004085 ORTHO05D005189 7.5e-101 371.3 319 57.1
Peaxi162Scf00013g00834 Petunia axillaris HOM05D004085 ORTHO05D005189 7.5e-101 371.3 309 59.5
Cpa.g.sc1.168 Carica papaya HOM05D004085 ORTHO05D005189 1.3e-100 370.5 319 56.4
MD13G1056600 Malus domestica HOM05D004085 ORTHO05D005189 1.7e-100 370.2 323 57.3
Sc14g0007770 Simmondsia chinensis HOM05D004085 ORTHO05D005189 1.7e-100 370.2 318 57.9
COL.COLO4_27493 Corchorus olitorius HOM05D004085 ORTHO05D005189 2.2e-100 369.8 290 59.7
Psat4g122760 Pisum sativum HOM05D004085 ORTHO05D005189 2.9e-100 369.4 318 56.3
PGSC0003DMG400001937 Solanum tuberosum HOM05D004085 ORTHO05D005189 3.7e-100 369.0 318 55.0
Carub.0005s0294 Capsella rubella HOM05D004085 ORTHO05D005189 8.3e-100 367.9 319 56.7
Sopen04g001280 Solanum pennellii HOM05D004085 ORTHO05D005189 8.3e-100 367.9 318 55.0
BcaC06g31165 Brassica carinata HOM05D004085 ORTHO05D005189 1.1e-99 367.5 319 56.1
Lj3A1027G87 Lonicera japonica HOM05D004085 ORTHO05D005189 1.1e-99 367.5 369 50.9
Psat4g118760 Pisum sativum HOM05D004085 ORTHO05D005189 1.4e-99 367.1 318 56.0
BcaC03g17242 Brassica carinata HOM05D004085 ORTHO05D005189 2.4e-99 366.3 319 56.1
A02p33630 Brassica napus HOM05D004085 ORTHO05D005189 2.4e-99 366.3 319 55.8
Cfa008850 Carpinus fangiana HOM05D004085 ORTHO05D005189 3.2e-99 365.9 305 58.7
AT2G03800 Arabidopsis thaliana HOM05D004085 ORTHO05D005189 5.4e-99 365.2 319 55.8
MSTRG.779 Avicennia marina HOM05D004085 ORTHO05D005189 5.4e-99 365.2 319 57.1
Thhalv10004640m.g Eutrema salsugineum HOM05D004085 ORTHO05D005189 5.4e-99 365.2 319 56.4
BolC2t11263H Brassica oleracea HOM05D004085 ORTHO05D005189 7.1e-99 364.8 319 55.8
VMungo0251G3520 Vigna mungo HOM05D004085 ORTHO05D005189 7.1e-99 364.8 340 53.8
Cc11_g11560 Coffea canephora HOM05D004085 ORTHO05D005189 9.2e-99 364.4 318 55.7
Lj4g0023791 Lotus japonicus HOM05D004085 ORTHO05D005189 9.2e-99 364.4 319 55.5
Nitab4.5_0000591g0050 Nicotiana tabacum HOM05D004085 ORTHO05D005189 9.2e-99 364.4 316 55.1
CARHR146210 Cardamine hirsuta HOM05D004085 ORTHO05D005189 1.6e-98 363.6 318 56.0
DCAR_007209 Daucus carota HOM05D004085 ORTHO05D005189 1.6e-98 363.6 317 55.2
Lalb_Chr20g0117031 Lupinus albus HOM05D004085 ORTHO05D005189 1.6e-98 363.6 323 55.4
CSS0006421 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 3.5e-98 362.5 317 58.0
Haze_11859 Corylus avellana HOM05D004085 ORTHO05D005189 3.5e-98 362.5 371 50.4
C02p51780 Brassica napus HOM05D004085 ORTHO05D005189 6.0e-98 361.7 319 55.5
Sp2g14620 Schrenkiella parvula HOM05D004085 ORTHO05D005189 7.8e-98 361.3 319 55.2
Aa31LG2G6920 Aethionema arabicum HOM05D004085 ORTHO05D005189 1.0e-97 360.9 334 53.3
BcaB07g30279 Brassica carinata HOM05D004085 ORTHO05D005189 1.3e-97 360.5 319 55.5
ECA233G2807 Erigeron canadensis HOM05D004085 ORTHO05D005189 5.1e-97 358.6 317 54.9
BcaC06g31143 Brassica carinata HOM05D004085 ORTHO05D005189 6.6e-97 358.2 319 55.2
HanXRQChr12g0365061 Helianthus annuus HOM05D004085 ORTHO05D005189 1.1e-96 357.5 317 54.9
C07p34240 Brassica napus HOM05D004085 ORTHO05D005189 1.9e-96 356.7 319 54.9
BolC7t43952H Brassica oleracea HOM05D004085 ORTHO05D005189 1.9e-96 356.7 319 54.9
RcHm_v2.0_Chr4g0437351 Rosa chinensis HOM05D004085 ORTHO05D005189 1.9e-96 356.7 315 56.2
Os08g0339200 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 4.3e-96 355.5 320 55.9
A06p42850 Brassica napus HOM05D004085 ORTHO05D005189 7.3e-96 354.8 319 54.9
BraA06t27197Z Brassica rapa HOM05D004085 ORTHO05D005189 7.3e-96 354.8 319 54.9
FAN12G2772 Fragaria x ananassa HOM05D004085 ORTHO05D005189 7.3e-96 354.8 313 56.5
FAN22G1834 Fragaria x ananassa HOM05D004085 ORTHO05D005189 2.8e-95 352.8 313 55.6
Hund25155 Selenicereus undatus HOM05D004085 ORTHO05D005189 5.8e-93 345.1 391 47.3
AUR62003058 Chenopodium quinoa HOM05D004085 ORTHO05D005189 9.9e-93 344.4 317 53.3
Gohir.A11G034100 Gossypium hirsutum HOM05D004085 ORTHO05D005189 6.4e-92 341.7 317 53.9
Lalb_Chr15g0084991 Lupinus albus HOM05D004085 ORTHO05D005189 2.4e-91 339.7 318 52.5
Duzib248G1362 Durio zibethinus HOM05D004085 ORTHO05D005189 9.3e-91 337.8 318 54.4
AUR62007873 Chenopodium quinoa HOM05D004085 ORTHO05D005189 1.6e-90 337.0 317 52.4
Cpa.g.sc3.236 Carica papaya HOM05D004085 ORTHO05D005189 7.8e-90 334.7 339 49.3
HPP92_003714 Vanilla planifolia HOM05D004085 ORTHO05D005189 1.3e-89 334.0 297 56.9
Lsat_1_v5_gn_8_36601 Lactuca sativa HOM05D004085 ORTHO05D005189 3.9e-89 332.4 317 53.6
EL10Ac6g14673 Beta vulgaris HOM05D004085 ORTHO05D005189 2.5e-88 329.7 338 50.6
CSS0016924 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 2.1e-87 326.6 317 50.8
CSS0030921 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 2.1e-87 326.6 320 50.6
CBR_g34346 Chara braunii HOM05D004085 ORTHO05D005189 2.8e-87 326.2 355 47.6
SGA_v2.0_scaffold36G14490 Striga asiatica HOM05D004085 ORTHO05D005189 2.8e-87 326.2 319 51.7
MBI14_g08107_MAGBIO Magnolia biondii HOM05D004085 ORTHO05D005189 3.6e-87 325.9 272 58.8
FAN07G2517 Fragaria x ananassa HOM05D004085 ORTHO05D005189 1.1e-86 324.3 402 45.0
Migut.L01162 Erythranthe guttata HOM05D004085 ORTHO05D005189 1.3e-84 317.4 281 55.5
Lj5A137T62 Lonicera japonica HOM05D004085 ORTHO05D005189 4.6e-82 308.9 291 55.7
SHI14335 Sapria himalayana HOM05D004085 ORTHO05D005189 7.8e-82 308.1 334 48.8
Eucgr.K02549 Eucalyptus grandis HOM05D004085 ORTHO05D005189 8.7e-81 304.7 317 49.2
COL.COLO4_27802 Corchorus olitorius HOM05D004085 ORTHO05D005189 2.4e-78 296.6 252 56.3
MD16G1055500 Malus domestica HOM05D004085 ORTHO05D005189 1.1e-70 271.2 282 50.0
Oeu045347.1 Olea europaea HOM05D004085 ORTHO05D005189 1.4e-67 260.8 243 54.7
BraA02t08382Z Brassica rapa HOM05D004085 ORTHO05D005189 2.5e-67 260.0 226 56.6
Nn3g17533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 2.3e-65 253.4 290 45.5
PGSC0003DMG401004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 7.9e-58 228.4 183 60.7
unitig_22.g6891 Utricularia gibba HOM05D004085 ORTHO05D005189 9.7e-56 221.5 217 49.3
FvH4_4g29300 Fragaria vesca HOM05D004085 ORTHO05D005189 4.8e-55 219.2 200 54.5
arahy.Tifrunner.gnm1.ann1.A9XC2E Arachis hypogaea HOM05D004085 ORTHO05D005189 3.4e-53 213.0 197 54.8
Os09g0248000 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 1.7e-47 194.1 166 56.0
CSS0002590 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 2.6e-45 186.8 306 40.5
C07p34190 Brassica napus HOM05D004085 ORTHO05D005189 2.1e-42 177.2 188 48.9
Solyc04g005300.4 Solanum lycopersicum HOM05D004085 ORTHO05D005189 4.4e-40 169.5 141 56.0
TPR.G27985 Trifolium pratense HOM05D004085 ORTHO05D005189 5.7e-40 169.1 152 55.9
Oeu045348.1 Olea europaea HOM05D004085 ORTHO05D005189 6.3e-39 165.6 145 53.8
MBI10_g36395_MAGBIO Magnolia biondii HOM05D004085 ORTHO05D005189 2.7e-34 150.2 147 51.7
Peaxi162Scf00098g00096 Petunia axillaris HOM05D004085 ORTHO05D005189 2.6e-29 133.7 123 52.8
HPP92_003722 Vanilla planifolia HOM05D004085 ORTHO05D005189 5.9e-29 132.5 122 54.1
SEGI_05680 Sequoiadendron giganteum HOM05D004085 ORTHO05D005189 6.1e-26 122.5 107 54.2
BolC7t43946H Brassica oleracea HOM05D004085 ORTHO05D005189 4.0e-25 119.8 95 56.8
TPR.G3316 Trifolium pratense HOM05D004085 ORTHO05D026373 1.5e-24 117.9 90 58.9
Thecc.03G108100 Theobroma cacao HOM05D004085 ORTHO05D026373 7.0e-22 109.0 91 56.0
MD05G1127700 Malus domestica HOM05D004085 ORTHO05D005189 3.5e-21 106.7 92 58.7
TPR.G40588 Trifolium pratense HOM05D004085 ORTHO05D005189 1.2e-18 98.2 76 55.3
Actinidia04797 Actinidia chinensis HOM05D004085 ORTHO05D026373 4.7e-18 96.3 74 58.1
Duzib068G1264 Durio zibethinus HOM05D004085 ORTHO05D005189 8.0e-18 95.5 67 64.2
Lj3C737G8 Lonicera japonica HOM05D004085 ORTHO05D005189 2.6e-16 90.5 75 52.0
SEGI_34269 Sequoiadendron giganteum HOM05D004085 ORTHO05D005189 7.5e-16 89.0 59 69.5
BolC7t43934H Brassica oleracea HOM05D004085 ORTHO05D005189 9.8e-16 88.6 106 45.3
Lj5A720T31 Lonicera japonica HOM05D004085 ORTHO05D026373 3.1e-14 83.6 161 40.4
Ciclev10024148m.g Citrus clementina HOM05D004085 ORTHO05D043374 5.7e-08 62.8 43 65.1
BcaC06g31148 Brassica carinata HOM05D004085 ORTHO05D005189 3.7e-07 60.1 82 40.2
CANSAT64G2585 Cannabis sativa HOM05D004085 ORTHO05D043374 3.2e-06 57.0 45 55.6


User provided reference genes

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