Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c4_31220 Physcomitrium patens HOM05D003892 ORTHO05D004522 0.0e+00 1357.4 683 100.0
Pp3c26_8020 Physcomitrium patens HOM05D003892 ORTHO05D004522 5.8e-228 794.7 680 62.4
AagrBONN_evm.TU.Sc2ySwM_228.3493 Anthoceros agrestis HOM05D003892 ORTHO05D004522 7.4e-82 309.3 456 39.9
TAR633G1336 Trochodendron aralioides HOM05D003892 ORTHO05D004522 1.1e-72 278.9 442 37.3
Nn2g14423 Nelumbo nucifera HOM05D003892 ORTHO05D004522 4.0e-72 276.9 659 33.7
TAR636G2427 Trochodendron aralioides HOM05D003892 ORTHO05D004522 4.5e-71 273.5 426 37.8
GSVIVG01015854001 Vitis vinifera HOM05D003892 ORTHO05D004522 1.0e-70 272.3 442 37.8
Aqoxy1G00583 Aquilegia oxysepala HOM05D003892 ORTHO05D004522 2.2e-70 271.2 445 36.2
DCAR_013462 Daucus carota HOM05D003892 ORTHO05D004522 6.5e-70 269.6 444 37.2
Manes.08G037500 Manihot esculenta HOM05D003892 ORTHO05D004522 1.6e-68 265.0 442 37.1
Duzib128G1914 Durio zibethinus HOM05D003892 ORTHO05D004522 6.0e-68 263.1 447 37.6
Hma1.2p1_0304F.1_g119340 Hydrangea macrophylla HOM05D003892 ORTHO05D004522 1.3e-67 261.9 581 33.6
Potri.016G065600 Populus trichocarpa HOM05D003892 ORTHO05D004522 1.3e-67 261.9 442 37.1
Aqoxy2G02397 Aquilegia oxysepala HOM05D003892 ORTHO05D004522 3.9e-67 260.4 561 32.4
Lj1C1061G1 Lonicera japonica HOM05D003892 ORTHO05D004522 3.9e-67 260.4 436 37.8
CSS0037074 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 5.1e-67 260.0 589 33.4
TWI15G0645 Tripterygium wilfordii HOM05D003892 ORTHO05D004522 5.1e-67 260.0 442 37.8
Lalb_Chr01g0017711 Lupinus albus HOM05D003892 ORTHO05D004522 8.7e-67 259.2 588 34.4
Duzib106G1451 Durio zibethinus HOM05D003892 ORTHO05D004522 1.9e-66 258.1 602 32.9
PSO832G2838 Papaver somniferum HOM05D003892 ORTHO05D004522 1.9e-66 258.1 568 32.6
COL.COLO4_29492 Corchorus olitorius HOM05D003892 ORTHO05D004522 5.7e-66 256.5 445 34.8
Hund10790 Selenicereus undatus HOM05D003892 ORTHO05D004522 5.7e-66 256.5 613 33.3
arahy.Tifrunner.gnm1.ann1.H4389H Arachis hypogaea HOM05D003892 ORTHO05D004522 7.4e-66 256.1 444 37.8
PSO210G1032 Papaver somniferum HOM05D003892 ORTHO05D004522 1.6e-65 255.0 664 30.0
Glyma.19G202400 Glycine max HOM05D003892 ORTHO05D004522 3.7e-65 253.8 441 36.7
Cfa017615 Carpinus fangiana HOM05D003892 ORTHO05D004522 4.8e-65 253.4 513 34.1
Eucgr.A02543 Eucalyptus grandis HOM05D003892 ORTHO05D004522 6.3e-65 253.1 458 35.6
QL07p026283 Quercus lobata HOM05D003892 ORTHO05D004522 6.3e-65 253.1 600 32.5
Gohir.D04G093300 Gossypium hirsutum HOM05D003892 ORTHO05D004522 2.4e-64 251.1 474 35.4
Mapoly0011s0047 Marchantia polymorpha HOM05D003892 ORTHO05D004522 2.4e-64 251.1 590 32.4
Gorai.009G395500 Gossypium raimondii HOM05D003892 ORTHO05D004522 3.1e-64 250.8 474 35.2
MSTRG.5909 Avicennia marina HOM05D003892 ORTHO05D004522 9.0e-64 249.2 437 35.7
Potri.006G199200 Populus trichocarpa HOM05D003892 ORTHO05D004522 1.2e-63 248.8 574 33.1
Thecc.05G110400 Theobroma cacao HOM05D003892 ORTHO05D004522 1.5e-63 248.4 446 36.1
Psat3g027080 Pisum sativum HOM05D003892 ORTHO05D004522 2.0e-63 248.1 587 31.2
Lalb_Chr25g0287841 Lupinus albus HOM05D003892 ORTHO05D004522 3.4e-63 247.3 587 32.7
TPR.G34451 Trifolium pratense HOM05D003892 ORTHO05D004522 3.4e-63 247.3 485 33.2
Ca_09081_v3 Cicer arietinum L. HOM05D003892 ORTHO05D004522 4.5e-63 246.9 595 31.4
ATR0580G241 Amborella trichopoda HOM05D003892 ORTHO05D004522 5.9e-63 246.5 367 39.8
CiPaw.10G021500 Carya illinoinensis HOM05D003892 ORTHO05D004522 7.7e-63 246.1 444 38.1
Medtr7g106900 Medicago truncatula HOM05D003892 ORTHO05D004522 7.7e-63 246.1 590 31.2
CsaV3_3G038440 Cucumis sativus L. HOM05D003892 ORTHO05D004522 1.0e-62 245.7 442 36.0
Actinidia03963 Actinidia chinensis HOM05D003892 ORTHO05D004522 1.3e-62 245.4 445 36.9
Gohir.D01G189600 Gossypium hirsutum HOM05D003892 ORTHO05D004522 1.3e-62 245.4 443 36.3
ClCG10G017850 Citrullus lanatus HOM05D003892 ORTHO05D004522 1.7e-62 245.0 442 35.1
Ciclev10011278m.g Citrus clementina HOM05D003892 ORTHO05D004522 1.7e-62 245.0 599 32.1
Glyma.03G205000 Glycine max HOM05D003892 ORTHO05D004522 1.7e-62 245.0 440 35.7
Gorai.002G233300 Gossypium raimondii HOM05D003892 ORTHO05D004522 2.2e-62 244.6 443 36.3
CANSAT64G1569 Cannabis sativa HOM05D003892 ORTHO05D004522 2.9e-62 244.2 467 35.1
MELO3C009588.2 Cucumis melo HOM05D003892 ORTHO05D004522 2.9e-62 244.2 444 35.8
Sed0022353 Sechium edule HOM05D003892 ORTHO05D004522 2.9e-62 244.2 594 32.8
Lj1g0007585 Lotus japonicus HOM05D003892 ORTHO05D004522 3.8e-62 243.8 625 30.9
Sp5g07700 Schrenkiella parvula HOM05D003892 ORTHO05D004522 6.5e-62 243.0 443 35.2
EL10Ac5g11803 Beta vulgaris HOM05D003892 ORTHO05D004522 1.1e-61 242.3 592 33.1
AUR62038416 Chenopodium quinoa HOM05D003892 ORTHO05D004522 1.4e-61 241.9 596 33.6
Aa31LG11G3840 Aethionema arabicum HOM05D003892 ORTHO05D004522 3.2e-61 240.7 599 33.1
AUR62036307 Chenopodium quinoa HOM05D003892 ORTHO05D004522 3.2e-61 240.7 453 35.8
Gohir.A01G199500 Gossypium hirsutum HOM05D003892 ORTHO05D004522 3.2e-61 240.7 657 31.2
BcaC02g09701 Brassica carinata HOM05D003892 ORTHO05D004522 5.5e-61 240.0 490 33.9
A04p05070 Brassica napus HOM05D003892 ORTHO05D004522 9.4e-61 239.2 490 34.1
THA.LOC104825242 Tarenaya hassleriana HOM05D003892 ORTHO05D004522 2.1e-60 238.0 467 34.9
SGA_v2.0_scaffold112G31566 Striga asiatica HOM05D003892 ORTHO05D004522 2.7e-60 237.7 496 34.3
SalBow1G7123 Salvia bowleyana HOM05D003892 ORTHO05D004522 3.6e-60 237.3 455 34.7
SalBow1G1519 Salvia bowleyana HOM05D003892 ORTHO05D004522 4.6e-60 236.9 455 34.7
Rhsim03G0058500 Rhododendron simsii HOM05D003892 ORTHO05D004522 1.0e-59 235.7 597 32.3
HPP92_013933 Vanilla planifolia HOM05D003892 ORTHO05D004522 1.0e-59 235.7 429 33.8
arahy.Tifrunner.gnm1.ann1.IGZ3F9 Arachis hypogaea HOM05D003892 ORTHO05D004522 1.4e-59 235.3 444 35.4
BcaB01g00163 Brassica carinata HOM05D003892 ORTHO05D004522 1.4e-59 235.3 450 35.1
BraA04t16218Z Brassica rapa HOM05D003892 ORTHO05D004522 3.9e-59 233.8 490 33.9
Migut.J00728 Erythranthe guttata HOM05D003892 ORTHO05D004522 3.9e-59 233.8 447 35.3
C04p37570 Brassica napus HOM05D003892 ORTHO05D004522 5.1e-59 233.4 490 33.3
HanXRQChr02g0052851 Helianthus annuus HOM05D003892 ORTHO05D004522 5.1e-59 233.4 443 33.9
AL5G35820 Arabidopsis lyrata HOM05D003892 ORTHO05D004522 6.7e-59 233.0 455 34.7
Oeu058130.1 Olea europaea HOM05D003892 ORTHO05D004522 8.8e-59 232.6 697 29.7
BcaB02g08458 Brassica carinata HOM05D003892 ORTHO05D004522 1.5e-58 231.9 444 34.7
PGSC0003DMG400021344 Solanum tuberosum HOM05D003892 ORTHO05D004522 1.5e-58 231.9 439 34.9
Carub.0005s2135 Capsella rubella HOM05D003892 ORTHO05D004522 2.0e-58 231.5 463 33.0
SMO351G0585 Selaginella moellendorffii HOM05D003892 ORTHO05D004522 2.0e-58 231.5 514 33.3
AT3G54750 Arabidopsis thaliana HOM05D003892 ORTHO05D004522 3.3e-58 230.7 442 35.5
Phvul.001G198500 Phaseolus vulgaris HOM05D003892 ORTHO05D004522 4.3e-58 230.3 364 37.4
Prupe.7G089700 Prunus persica HOM05D003892 ORTHO05D004522 4.3e-58 230.3 517 32.7
Sopen01g002690 Solanum pennellii HOM05D003892 ORTHO05D004522 4.3e-58 230.3 439 35.5
Atru.chr8.1281 Acer truncatum HOM05D003892 ORTHO05D004522 7.4e-58 229.6 447 33.3
Os12g0621700 Oryza sativa ssp. japonica HOM05D003892 ORTHO05D004522 7.4e-58 229.6 644 30.0
PGR004G2391 Punica granatum HOM05D003892 ORTHO05D004522 7.4e-58 229.6 661 29.8
Ah.12g059580 Amaranthus hybridus HOM05D003892 ORTHO05D004522 9.7e-58 229.2 366 38.3
Cc06_g06980 Coffea canephora HOM05D003892 ORTHO05D004522 9.7e-58 229.2 563 32.1
Thhalv10010226m.g Eutrema salsugineum HOM05D003892 ORTHO05D004522 9.7e-58 229.2 452 33.6
Solyc01g006700.3 Solanum lycopersicum HOM05D003892 ORTHO05D004522 9.7e-58 229.2 438 35.2
Lj6g0017825 Lotus japonicus HOM05D003892 ORTHO05D004522 1.7e-57 228.4 442 34.2
MBI11_g43834_MAGBIO Magnolia biondii HOM05D003892 ORTHO05D004522 2.8e-57 227.6 447 34.2
THA.LOC104824220 Tarenaya hassleriana HOM05D003892 ORTHO05D004522 3.7e-57 227.3 536 32.5
SGA_v2.0_scaffold31G12827 Striga asiatica HOM05D003892 ORTHO05D004522 6.3e-57 226.5 492 33.5
CAN.G388.52 Capsicum annuum HOM05D003892 ORTHO05D004522 8.2e-57 226.1 437 34.3
HanXRQChr13g0398781 Helianthus annuus HOM05D003892 ORTHO05D004522 8.2e-57 226.1 443 33.0
Sc22g0003030 Simmondsia chinensis HOM05D003892 ORTHO05D004522 8.2e-57 226.1 441 34.5
MD12G1046200 Malus domestica HOM05D003892 ORTHO05D004522 1.1e-56 225.7 599 29.7
VMungo1383G0340 Vigna mungo HOM05D003892 ORTHO05D004522 1.1e-56 225.7 364 37.4
CARHR164690 Cardamine hirsuta HOM05D003892 ORTHO05D004522 1.8e-56 224.9 445 34.4
ECA233G3816 Erigeron canadensis HOM05D003892 ORTHO05D004522 2.4e-56 224.6 466 34.1
A09p47680 Brassica napus HOM05D003892 ORTHO05D004522 3.1e-56 224.2 389 37.3
BraA09t40224Z Brassica rapa HOM05D003892 ORTHO05D004522 3.1e-56 224.2 389 37.3
Sed0022528 Sechium edule HOM05D003892 ORTHO05D004522 6.9e-56 223.0 367 37.9
Haze_20130 Corylus avellana HOM05D003892 ORTHO05D004522 9.1e-56 222.6 653 29.6
C08p29890 Brassica napus HOM05D003892 ORTHO05D004522 1.5e-55 221.9 376 37.0
BcaC07g39789 Brassica carinata HOM05D003892 ORTHO05D004522 2.6e-55 221.1 376 36.4
BolC8t50600H Brassica oleracea HOM05D003892 ORTHO05D004522 2.6e-55 221.1 376 36.4
CDE07G1113 Ceratophyllum demersum HOM05D003892 ORTHO05D004522 2.6e-55 221.1 386 35.8
MD14G1044900 Malus domestica HOM05D003892 ORTHO05D004522 3.4e-55 220.7 664 27.9
arahy.Tifrunner.gnm1.ann1.P5VIE6 Arachis hypogaea HOM05D003892 ORTHO05D004522 3.8e-54 217.2 648 30.2
Dinv25081 Davidia involucrata HOM05D003892 ORTHO05D004522 1.4e-53 215.3 433 35.1
Zm00001eb032200 Zea mays HOM05D003892 ORTHO05D004522 1.4e-53 215.3 579 30.6
Aa31LG2G20030 Aethionema arabicum HOM05D003892 ORTHO05D004522 4.2e-53 213.8 444 34.9
arahy.Tifrunner.gnm1.ann1.L9LT45 Arachis hypogaea HOM05D003892 ORTHO05D004522 9.4e-53 212.6 493 32.3
ECA238G3852 Erigeron canadensis HOM05D003892 ORTHO05D004522 1.2e-52 212.2 446 32.7
TWI81G0594 Tripterygium wilfordii HOM05D003892 ORTHO05D004522 1.6e-52 211.8 296 40.9
Lsat_1_v5_gn_6_34240 Lactuca sativa HOM05D003892 ORTHO05D004522 1.4e-51 208.8 448 33.5
Gohir.A04G055942 Gossypium hirsutum HOM05D003892 ORTHO05D004522 2.0e-50 204.9 322 38.8
Lsat_1_v5_gn_2_121661 Lactuca sativa HOM05D003892 ORTHO05D004522 2.0e-50 204.9 437 33.0
FAN05G2923 Fragaria x ananassa HOM05D003892 ORTHO05D004522 5.7e-50 203.4 444 32.0
Medtr7g029625 Medicago truncatula HOM05D003892 ORTHO05D004522 1.3e-49 202.2 394 33.2
MBI11_g33439_MAGBIO Magnolia biondii HOM05D003892 ORTHO05D004522 6.3e-49 199.9 283 41.0
FAN02G1525 Fragaria x ananassa HOM05D003892 ORTHO05D004522 2.4e-48 198.0 447 30.4
Sabra06G0153100 Salix brachista HOM05D003892 ORTHO05D004522 4.1e-48 197.2 446 33.2
Sabra16G0067100 Salix brachista HOM05D003892 ORTHO05D004522 4.1e-48 197.2 445 32.8
Peaxi162Scf00210g00093 Petunia axillaris HOM05D003892 ORTHO05D004522 1.2e-47 195.7 442 31.4
FAN14G4612 Fragaria x ananassa HOM05D003892 ORTHO05D004522 4.5e-47 193.7 488 29.9
Peaxi162Scf00751g00063 Petunia axillaris HOM05D003892 ORTHO05D004522 5.9e-47 193.4 442 31.2
FAN05G3327 Fragaria x ananassa HOM05D003892 ORTHO05D004522 7.7e-47 193.0 463 32.2
Actinidia37779 Actinidia chinensis HOM05D003892 ORTHO05D004522 2.2e-46 191.4 250 42.4
RcHm_v2.0_Chr3g0477411 Rosa chinensis HOM05D003892 ORTHO05D004522 2.9e-46 191.0 656 27.3
Nitab4.5_0003430g0010 Nicotiana tabacum HOM05D003892 ORTHO05D004522 8.5e-46 189.5 332 35.5
CBR_g20103 Chara braunii HOM05D003892 ORTHO05D004522 8.0e-44 183.0 470 31.1
Nitab4.5_0000300g0030 Nicotiana tabacum HOM05D003892 ORTHO05D004522 3.0e-43 181.0 281 38.8
FvH4_6g21040 Fragaria vesca HOM05D003892 ORTHO05D004522 5.7e-42 176.8 389 32.1
Dinv11899 Davidia involucrata HOM05D003892 ORTHO05D004522 4.8e-41 173.7 262 40.1
vmacro07513 Vaccinium macrocarpon HOM05D003892 ORTHO05D004522 8.0e-36 156.4 417 29.7
Cpa.g.sc222.13 Carica papaya HOM05D003892 ORTHO05D004522 3.0e-35 154.5 311 35.4
unitig_26.g9151 Utricularia gibba HOM05D003892 ORTHO05D004522 4.8e-33 147.1 257 36.2
unitig_749.g14208 Utricularia gibba HOM05D003892 ORTHO05D004522 2.0e-31 141.7 253 37.2
arahy.Tifrunner.gnm1.ann1.75SLRD Arachis hypogaea HOM05D003892 ORTHO05D004522 2.9e-30 137.9 237 37.6
Cfa017831 Carpinus fangiana HOM05D003892 ORTHO05D004522 2.0e-26 125.2 219 35.6
Sed0005279 Sechium edule HOM05D000521 ORTHO05D004522 5.7e-26 123.6 190 37.4
GSVIVG01020969001 Vitis vinifera HOM05D003892 ORTHO05D004522 2.9e-22 111.3 349 29.2
CSS0016552 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 9.5e-21 106.3 208 35.1
SHI28320 Sapria himalayana HOM05D003892 ORTHO05D004522 1.4e-19 102.4 388 27.1
GSVIVG01020973001 Vitis vinifera HOM05D003892 ORTHO05D004522 2.3e-19 101.7 124 45.2
Gohir.D07G211433 Gossypium hirsutum HOM05D003892 ORTHO05D004522 1.2e-18 99.4 202 32.7
HPP92_012152 Vanilla planifolia HOM05D003892 ORTHO05D004522 1.4e-16 92.4 122 36.1
CSS0004478 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 5.4e-16 90.5 313 29.1
Nitab4.5_0000429g0010 Nicotiana tabacum HOM05D003892 ORTHO05D004522 9.2e-16 89.7 218 29.8
GSVIVG01020966001 Vitis vinifera HOM05D003892 ORTHO05D004522 6.6e-14 83.6 95 47.4
SEGI_30208 Sequoiadendron giganteum HOM05D003892 ORTHO05D004522 2.8e-12 78.2 94 45.7
ATR1154G016 Amborella trichopoda HOM05D003892 ORTHO05D004522 1.3e-09 69.3 89 42.7
arahy.Tifrunner.gnm1.ann1.R2HNIM Arachis hypogaea HOM05D003892 ORTHO05D004522 1.2e-07 62.8 138 34.1
arahy.Tifrunner.gnm1.ann1.C1NY7P Arachis hypogaea HOM05D003892 ORTHO05D004522 6.6e-06 57.0 115 34.8


User provided reference genes

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