Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c4_31020 Physcomitrium patens HOM05D005289 ORTHO05D006346 3.9e-88 328.2 173 100.0
Pp3c4_29510 Physcomitrium patens HOM05D005289 ORTHO05D006346 2.1e-65 252.7 175 80.0
Pp3c26_13800 Physcomitrium patens HOM05D005289 ORTHO05D006346 1.5e-44 183.3 174 60.9
Pp3c26_13840 Physcomitrium patens HOM05D005289 ORTHO05D006346 1.5e-44 183.3 174 60.9
AagrBONN_evm.TU.Sc2ySwM_368.462 Anthoceros agrestis HOM05D000595 ORTHO05D006346 2.2e-22 109.8 123 52.8
Mapoly0005s0050 Marchantia polymorpha HOM05D005289 ORTHO05D006346 1.8e-21 106.7 120 50.8
arahy.Tifrunner.gnm1.ann1.CPCZ9R Arachis hypogaea HOM05D005289 ORTHO05D006346 2.0e-20 103.2 108 52.8
Phvul.004G000400 Phaseolus vulgaris HOM05D005289 ORTHO05D006346 2.0e-20 103.2 125 49.6
AagrBONN_evm.TU.Sc2ySwM_344.750 Anthoceros agrestis HOM05D005289 ORTHO05D006346 3.8e-19 99.0 139 45.3
Lj2g0002318 Lotus japonicus HOM05D005289 ORTHO05D006346 3.8e-19 99.0 127 47.2
Glyma.19G000200 Glycine max HOM05D005289 ORTHO05D006346 8.5e-19 97.8 105 47.6
HanXRQChr17g0563021 Helianthus annuus HOM05D005289 ORTHO05D006346 8.5e-19 97.8 92 54.3
SEGI_30396 Sequoiadendron giganteum HOM05D005289 ORTHO05D006346 1.5e-18 97.1 103 48.5
MD16G1005600 Malus domestica HOM05D005289 ORTHO05D006346 2.5e-18 96.3 110 49.1
VMungo0464G1452 Vigna mungo HOM05D005289 ORTHO05D006346 2.5e-18 96.3 118 46.6
Glyma.05G000300 Glycine max HOM05D005289 ORTHO05D006346 5.5e-18 95.1 102 48.0
Aqoxy3G04359 Aquilegia oxysepala HOM05D005289 ORTHO05D006346 1.6e-17 93.6 107 47.7
MD13G1000200 Malus domestica HOM05D005289 ORTHO05D006346 1.6e-17 93.6 111 47.7
RcHm_v2.0_Chr4g0447301 Rosa chinensis HOM05D005289 ORTHO05D006346 1.6e-17 93.6 103 50.5
SMO367G0363 Selaginella moellendorffii HOM05D005289 ORTHO05D006346 2.1e-17 93.2 76 56.6
DCAR_006352 Daucus carota HOM05D005289 ORTHO05D006346 2.7e-17 92.8 88 55.7
CANSAT78G0451 Cannabis sativa HOM05D005289 ORTHO05D006346 3.6e-17 92.4 78 59.0
Gohir.A03G168400 Gossypium hirsutum HOM05D005289 ORTHO05D006346 4.7e-17 92.0 90 53.3
FvH4_4g37381 Fragaria vesca HOM05D005289 ORTHO05D006346 6.1e-17 91.7 99 48.5
FAN17G1203 Fragaria x ananassa HOM05D005289 ORTHO05D006346 6.1e-17 91.7 99 48.5
Gohir.D02G191500 Gossypium hirsutum HOM05D005289 ORTHO05D006346 6.1e-17 91.7 90 53.3
Gorai.005G214300 Gossypium raimondii HOM05D005289 ORTHO05D006346 6.1e-17 91.7 90 53.3
Dinv43423 Davidia involucrata HOM05D005289 ORTHO05D006346 8.0e-17 91.3 80 57.5
Prupe.1G352600 Prunus persica HOM05D005289 ORTHO05D006346 1.4e-16 90.5 116 43.1
TWI77G0922 Tripterygium wilfordii HOM05D005289 ORTHO05D006346 1.4e-16 90.5 82 52.4
CiPaw.16G000100 Carya illinoinensis HOM05D005289 ORTHO05D006346 1.8e-16 90.1 104 42.3
Rhsim07G0056900 Rhododendron simsii HOM05D005289 ORTHO05D006346 1.8e-16 90.1 106 48.1
RhsimUnG0144200 Rhododendron simsii HOM05D005289 ORTHO05D006346 1.8e-16 90.1 106 48.1
Dinv09331 Davidia involucrata HOM05D005289 ORTHO05D006346 2.3e-16 89.7 86 51.2
Nn7g38127 Nelumbo nucifera HOM05D005289 ORTHO05D006346 3.0e-16 89.4 79 53.2
Solyc01g087520.3 Solanum lycopersicum HOM05D005289 ORTHO05D006346 3.0e-16 89.4 82 58.5
Ciclev10017019m.g Citrus clementina HOM05D005289 ORTHO05D006346 4.0e-16 89.0 158 38.0
Cfa018663 Carpinus fangiana HOM05D005289 ORTHO05D006346 5.2e-16 88.6 78 55.1
ECA234G0076 Erigeron canadensis HOM05D005289 ORTHO05D006346 5.2e-16 88.6 90 50.0
Sc06g0007700 Simmondsia chinensis HOM05D005289 ORTHO05D006346 5.2e-16 88.6 78 55.1
Sopen01g034490 Solanum pennellii HOM05D005289 ORTHO05D006346 5.2e-16 88.6 82 58.5
PGSC0003DMG400006858 Solanum tuberosum HOM05D005289 ORTHO05D006346 5.2e-16 88.6 82 58.5
TAR376G0259 Trochodendron aralioides HOM05D005289 ORTHO05D006346 5.2e-16 88.6 121 41.3
Carub.0006s2124 Capsella rubella HOM05D005289 ORTHO05D006346 6.8e-16 88.2 85 49.4
Lsat_1_v5_gn_4_31280 Lactuca sativa HOM05D007122 ORTHO05D008918 6.8e-16 88.2 92 47.8
BraA03t09731Z Brassica rapa HOM05D002331 ORTHO05D002624 8.8e-16 87.8 145 38.6
Ca_04131_v3 Cicer arietinum L. HOM05D005289 ORTHO05D006346 8.8e-16 87.8 89 47.2
THA.LOC104800596 Tarenaya hassleriana HOM05D005289 ORTHO05D006346 8.8e-16 87.8 175 40.6
FAN07G0133 Fragaria x ananassa HOM05D005289 ORTHO05D006346 1.2e-15 87.4 165 37.0
FAN07G0378 Fragaria x ananassa HOM05D005289 ORTHO05D006346 1.2e-15 87.4 165 37.0
CSS0022575 Camellia sinensis var. sinensis HOM05D005289 ORTHO05D006346 1.5e-15 87.0 89 52.8
CAN.G219.47 Capsicum annuum HOM05D005289 ORTHO05D006346 2.0e-15 86.7 82 54.9
MBI03_g11910_MAGBIO Magnolia biondii HOM05D005289 ORTHO05D006346 2.0e-15 86.7 118 41.5
A02p40970 Brassica napus HOM05D005289 ORTHO05D006346 2.6e-15 86.3 126 39.7
BraA02t09045Z Brassica rapa HOM05D005289 ORTHO05D006346 2.6e-15 86.3 126 39.7
CARHR190070 Cardamine hirsuta HOM05D005289 ORTHO05D006346 2.6e-15 86.3 165 34.5
Eucgr.G02623 Eucalyptus grandis HOM05D005289 ORTHO05D006346 2.6e-15 86.3 75 56.0
Lsat_1_v5_gn_4_31381 Lactuca sativa HOM05D005289 ORTHO05D006346 2.6e-15 86.3 175 34.3
Sabra10G0198900 Salix brachista HOM05D005289 ORTHO05D006346 2.6e-15 86.3 116 47.4
A03p03840 Brassica napus HOM05D002331 ORTHO05D002624 4.4e-15 85.5 174 38.5
CDE11G0284 Ceratophyllum demersum HOM05D005289 ORTHO05D006346 4.4e-15 85.5 89 50.6
PSO063G1455 Papaver somniferum HOM05D005289 ORTHO05D006346 4.4e-15 85.5 106 45.3
Duzib132G0443 Durio zibethinus HOM05D005289 ORTHO05D006346 5.7e-15 85.1 88 48.9
PGR142G2143 Punica granatum HOM05D005289 ORTHO05D006346 5.7e-15 85.1 116 42.2
Manes.16G000200 Manihot esculenta HOM05D005289 ORTHO05D006346 7.5e-15 84.7 89 50.6
Manes.14G174500 Manihot esculenta HOM05D005289 ORTHO05D006346 9.8e-15 84.3 91 48.4
Oeu049492.1 Olea europaea HOM05D005289 ORTHO05D006346 9.8e-15 84.3 88 53.4
SalBow6G0941 Salvia bowleyana HOM05D005289 ORTHO05D006346 9.8e-15 84.3 95 51.6
unitig_699.g19828 Utricularia gibba HOM05D005289 ORTHO05D006346 9.8e-15 84.3 93 47.3
BcaB01g05599 Brassica carinata HOM05D005289 ORTHO05D006346 1.3e-14 84.0 145 38.6
Potri.010G255500 Populus trichocarpa HOM05D005289 ORTHO05D006346 1.3e-14 84.0 79 57.0
Hma1.2p1_2160F.1_g315560 Hydrangea macrophylla HOM05D005289 ORTHO05D006346 1.7e-14 83.6 79 51.9
Atru.chr11.6 Acer truncatum HOM05D005289 ORTHO05D006346 2.2e-14 83.2 79 50.6
AT5G23440 Arabidopsis thaliana HOM05D005289 ORTHO05D006346 2.2e-14 83.2 133 34.6
BcaB01g05597 Brassica carinata HOM05D005289 ORTHO05D006346 2.2e-14 83.2 137 38.7
C02p60860 Brassica napus HOM05D005289 ORTHO05D006346 2.2e-14 83.2 153 35.3
CDE05G2330 Ceratophyllum demersum HOM05D005289 ORTHO05D006346 2.2e-14 83.2 84 47.6
Lj9P634T19 Lonicera japonica HOM05D005289 ORTHO05D006346 2.2e-14 83.2 90 52.2
Manes.16G039900 Manihot esculenta HOM05D005289 ORTHO05D006346 2.2e-14 83.2 80 51.2
Manes.16G040000 Manihot esculenta HOM05D005289 ORTHO05D006346 2.2e-14 83.2 80 51.2
Sp2g23720 Schrenkiella parvula HOM05D005289 ORTHO05D006346 2.2e-14 83.2 180 32.8
C03p04320 Brassica napus HOM05D005289 ORTHO05D006346 2.8e-14 82.8 155 38.7
BolC3t12965H Brassica oleracea HOM05D005289 ORTHO05D006346 2.8e-14 82.8 155 38.7
Oeu049005.1 Olea europaea HOM05D005289 ORTHO05D006346 2.8e-14 82.8 88 52.3
Aa31LG3G18150 Aethionema arabicum HOM05D005289 ORTHO05D006346 4.8e-14 82.0 152 36.2
Cc02_g28180 Coffea canephora HOM05D005289 ORTHO05D006346 4.8e-14 82.0 130 41.5
Medtr6g004100 Medicago truncatula HOM05D005289 ORTHO05D006346 4.8e-14 82.0 111 44.1
Hund08591 Selenicereus undatus HOM05D005289 ORTHO05D006346 4.8e-14 82.0 102 45.1
Duzib248G0326 Durio zibethinus HOM05D005289 ORTHO05D006346 8.3e-14 81.3 166 36.1
PSO782G1364 Papaver somniferum HOM05D005289 ORTHO05D006346 8.3e-14 81.3 109 45.9
Sabra08G0000100 Salix brachista HOM05D005289 ORTHO05D006346 8.3e-14 81.3 79 53.2
TPR.G25213 Trifolium pratense HOM05D005289 ORTHO05D006346 8.3e-14 81.3 87 48.3
BolC2t12138H Brassica oleracea HOM05D005289 ORTHO05D006346 1.1e-13 80.9 153 35.3
Nitab4.5_0006228g0010 Nicotiana tabacum HOM05D005289 ORTHO05D006346 1.1e-13 80.9 82 53.7
Os02g0638300 Oryza sativa ssp. japonica HOM05D005289 ORTHO05D006346 1.1e-13 80.9 80 47.5
QL01p000104 Quercus lobata HOM05D005289 ORTHO05D006346 1.1e-13 80.9 80 48.8
MSTRG.5030 Avicennia marina HOM05D005289 ORTHO05D006346 1.8e-13 80.1 83 50.6
Nitab4.5_0000707g0260 Nicotiana tabacum HOM05D005289 ORTHO05D006346 1.8e-13 80.1 82 53.7
Potri.008G002200 Populus trichocarpa HOM05D005289 ORTHO05D006346 1.8e-13 80.1 79 51.9
Thecc.02G151000 Theobroma cacao HOM05D005289 ORTHO05D006346 1.8e-13 80.1 90 46.7
AL6G18870 Arabidopsis lyrata HOM05D005289 ORTHO05D006346 2.4e-13 79.7 160 35.6
Thhalv10005472m.g Eutrema salsugineum HOM05D005289 ORTHO05D006346 2.4e-13 79.7 135 35.6
Oeu006561.1 Olea europaea HOM05D005289 ORTHO05D006346 2.4e-13 79.7 83 50.6
Sp6g34530 Schrenkiella parvula HOM05D005289 ORTHO05D006346 2.4e-13 79.7 75 53.3
Sed0001576 Sechium edule HOM05D005289 ORTHO05D006346 2.4e-13 79.7 75 53.3
SGA_v2.0_scaffold24G10667 Striga asiatica HOM05D005289 ORTHO05D006346 2.4e-13 79.7 111 42.3
Zm00001eb248360 Zea mays HOM05D005289 ORTHO05D006346 2.4e-13 79.7 109 42.2
Migut.N01609 Erythranthe guttata HOM05D005289 ORTHO05D006346 3.1e-13 79.3 95 48.4
vmacro13683 Vaccinium macrocarpon HOM05D005289 ORTHO05D006346 3.1e-13 79.3 170 37.1
Actinidia31077 Actinidia chinensis HOM05D005289 ORTHO05D006346 4.1e-13 79.0 76 51.3
ATR0124G002 Amborella trichopoda HOM05D005289 ORTHO05D006346 4.1e-13 79.0 82 46.3
AT5G08410 Arabidopsis thaliana HOM05D005289 ORTHO05D006346 4.1e-13 79.0 154 36.4
Cpa.g.sc248.7 Carica papaya HOM05D005289 ORTHO05D006346 5.4e-13 78.6 167 35.3
PGR044G1862 Punica granatum HOM05D005289 ORTHO05D006346 5.4e-13 78.6 90 45.6
Sed0008094 Sechium edule HOM05D005289 ORTHO05D006346 5.4e-13 78.6 76 50.0
AL6G34730 Arabidopsis lyrata HOM05D005289 ORTHO05D006346 7.0e-13 78.2 134 34.3
HPP92_004266 Vanilla planifolia HOM05D005289 ORTHO05D006346 7.0e-13 78.2 134 38.1
MELO3C011776.2 Cucumis melo HOM05D004444 ORTHO05D005246 9.1e-13 77.8 75 52.0
CsaV3_5G029240 Cucumis sativus L. HOM05D005289 ORTHO05D006346 9.1e-13 77.8 75 52.0
Zm00001eb185670 Zea mays HOM05D005289 ORTHO05D006346 1.2e-12 77.4 80 48.8
Gohir.A12G011400 Gossypium hirsutum HOM05D005289 ORTHO05D006346 1.6e-12 77.0 69 55.1
ClCG11G012840 Citrullus lanatus HOM05D005289 ORTHO05D006346 2.0e-12 76.6 75 50.7
Ah.15g093460 Amaranthus hybridus HOM05D005289 ORTHO05D006346 2.7e-12 76.3 125 38.4
Carub.0006s0732 Capsella rubella HOM05D005289 ORTHO05D006346 4.5e-12 75.5 175 33.7
CARHR204630 Cardamine hirsuta HOM05D005289 ORTHO05D006346 4.5e-12 75.5 154 34.4
Eucgr.J00323 Eucalyptus grandis HOM05D005289 ORTHO05D006346 4.5e-12 75.5 109 38.5
Thhalv10014787m.g Eutrema salsugineum HOM05D005289 ORTHO05D006346 7.7e-12 74.7 167 34.7
Gorai.008G011800 Gossypium raimondii HOM05D005289 ORTHO05D006346 1.0e-11 74.3 68 54.4
MD10G1109200 Malus domestica HOM05D005289 ORTHO05D006346 1.0e-11 74.3 71 52.1
Gohir.D12G011800 Gossypium hirsutum HOM05D005289 ORTHO05D006346 1.3e-11 73.9 90 44.4
THA.LOC104819368 Tarenaya hassleriana HOM05D005289 ORTHO05D006346 1.7e-11 73.6 73 50.7
CDE01G0630 Ceratophyllum demersum HOM05D000556 ORTHO05D006346 1.5e-10 70.5 117 35.9
AUR62028426 Chenopodium quinoa HOM05D005289 ORTHO05D006346 1.5e-10 70.5 79 44.3
AUR62038497 Chenopodium quinoa HOM05D005289 ORTHO05D006346 1.5e-10 70.5 127 36.2
CBR_g32063 Chara braunii HOM05D005289 ORTHO05D006346 3.2e-10 69.3 77 45.5
Cre16.g687294 Chlamydomonas reinhardtii HOM05D005289 ORTHO05D006346 4.2e-10 68.9 104 43.3
Os04g0528800 Oryza sativa ssp. japonica HOM05D005289 ORTHO05D006346 4.2e-10 68.9 167 29.9
Zm00001eb075910 Zea mays HOM05D005289 ORTHO05D006346 3.6e-09 65.9 87 39.1
Peaxi162Scf00019g00006 Petunia axillaris HOM05D005289 ORTHO05D006346 1.4e-08 63.9 82 45.1
MSTRG.28061 Avicennia marina HOM05D005289 ORTHO05D006346 5.2e-08 62.0 58 53.4
EL10Ac1g01282 Beta vulgaris HOM05D005289 ORTHO05D006346 2.6e-07 59.7 78 41.0


User provided reference genes

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